Wall clock time and date at job start Mon Mar 30 2020 03:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47064 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99622 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00597 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99622 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.96034 * 59.79080 * 13 11 10 15 15 C 1.54026 * 109.97642 * 298.55032 * 13 11 10 16 16 S 1.81916 * 104.39411 * 207.83079 * 15 13 11 17 17 C 1.71756 * 97.66104 * 18.85751 * 16 15 13 18 18 O 1.21336 * 125.75687 * 181.22327 * 17 16 15 19 19 C 1.50448 * 108.49237 * 1.20196 * 17 16 15 20 20 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 22 22 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 23 23 H 0.96996 * 119.99606 * 0.02562 * 10 9 7 24 24 H 1.09001 * 110.44657 * 326.55638 * 15 13 11 25 25 H 1.08996 * 110.45125 * 88.97364 * 15 13 11 26 26 H 1.08995 * 109.24879 * 217.86143 * 19 17 16 27 27 H 1.08998 * 109.24510 * 98.50619 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 1.7539 -4.8833 0.0000 12 8 0.5615 -5.1050 0.0000 13 6 2.7332 -6.0287 -0.0006 14 1 3.3675 -5.9764 0.8843 15 6 3.6000 -5.9793 -1.2728 16 16 4.0637 -7.7128 -1.5718 17 6 2.8414 -8.4453 -0.6130 18 8 2.6970 -9.6373 -0.4377 19 6 1.9802 -7.3600 -0.0267 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 3.1567 -3.4354 -0.0002 24 1 3.0234 -5.5892 -2.1116 25 1 4.4875 -5.3691 -1.1055 26 1 1.6993 -7.6340 0.9902 27 1 1.0789 -7.2512 -0.6299 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307657222.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:10 Heat of formation + Delta-G solvation = -108.648598 kcal Electronic energy + Delta-G solvation = -13425.014152 eV Core-core repulsion = 10886.675697 eV Total energy + Delta-G solvation = -2538.338455 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.11769 -40.05118 -36.46744 -36.08031 -34.33383 -30.05290 -28.85686 -26.37116 -24.49452 -22.70973 -21.16872 -19.16565 -18.64172 -17.93225 -17.06988 -16.94135 -16.35833 -16.16827 -15.87696 -15.29794 -15.03022 -14.53204 -14.24383 -14.00845 -13.72374 -12.98803 -12.83245 -12.69615 -12.49753 -12.22574 -12.19137 -11.46559 -10.85251 -10.78863 -10.57035 -9.85772 -9.55932 -8.27350 -6.43119 0.22832 0.34461 0.85323 1.46485 1.47555 1.58602 1.64192 2.23913 2.45780 3.06434 3.08945 3.46622 3.53777 3.73828 4.14662 4.25860 4.50142 4.72600 4.79139 5.14480 5.27019 5.47976 5.67258 5.77563 5.86478 6.67860 6.84220 7.25264 7.43446 8.84497 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.060186 B = 0.005287 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.113467 B = 5295.221903 C = 5652.010056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.553 4.553 8 H 0.088 0.912 9 C 0.264 3.736 10 N -0.696 5.696 11 C 0.512 3.488 12 O -0.594 6.594 13 C -0.092 4.092 14 H 0.154 0.846 15 C -0.081 4.081 16 S -0.147 6.147 17 C 0.366 3.634 18 O -0.453 6.453 19 C -0.172 4.172 20 H 0.267 0.733 21 H -0.008 1.008 22 H -0.010 1.010 23 H 0.413 0.587 24 H 0.109 0.891 25 H 0.161 0.839 26 H 0.121 0.879 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.410 -9.201 -1.288 14.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.215 1.215 6 H -0.177 1.177 7 C -0.591 4.591 8 H 0.106 0.894 9 C 0.141 3.859 10 N -0.346 5.346 11 C 0.297 3.703 12 O -0.475 6.475 13 C -0.114 4.114 14 H 0.172 0.828 15 C -0.230 4.230 16 S 0.088 5.912 17 C 0.135 3.865 18 O -0.334 6.334 19 C -0.217 4.217 20 H 0.076 0.924 21 H 0.010 0.990 22 H 0.008 0.992 23 H 0.249 0.751 24 H 0.127 0.873 25 H 0.179 0.821 26 H 0.139 0.861 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.277 -10.319 -1.891 15.402 hybrid contribution -1.038 1.402 0.730 1.891 sum 10.239 -8.917 -1.162 13.627 Atomic orbital electron populations 1.70127 1.08250 1.28476 1.50163 1.26012 0.95680 1.03798 0.94045 0.85217 0.78597 0.77286 0.78507 1.19745 1.21455 1.17749 1.21634 0.94478 0.90438 1.52529 0.89403 1.18595 0.88705 0.84163 0.94450 1.46109 1.11512 1.05077 1.71857 1.20641 0.89007 0.84553 0.76100 1.90690 1.19120 1.85239 1.52460 1.21688 0.96282 0.91216 1.02192 0.82817 1.24339 1.05071 0.93959 0.99603 1.86135 1.39827 1.05894 1.59347 1.25735 0.86737 0.92384 0.81687 1.90622 1.68439 1.17164 1.57222 1.22446 1.00757 0.92172 1.06354 0.92370 0.99033 0.99227 0.75056 0.87277 0.82136 0.86089 0.86857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.29 21.45 0.28 -53.64 15 2 C 0.00 0.23 5.46 84.65 0.46 0.69 15 3 Si 0.98 40.13 29.54 68.60 2.03 42.16 15 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.29 -11.94 7.11 99.48 0.71 -11.23 15 6 H -0.25 -9.56 7.11 99.48 0.71 -8.86 15 7 C -0.55 -27.72 9.28 25.60 0.24 -27.48 15 8 H 0.09 3.89 7.60 -2.91 -0.02 3.86 15 9 C 0.26 13.17 5.43 85.63 0.46 13.63 15 10 N -0.70 -24.61 5.48 -466.78 -2.56 -27.16 15 11 C 0.51 16.86 7.05 87.66 0.62 17.47 15 12 O -0.59 -25.81 15.55 -3.03 -0.05 -25.86 15 13 C -0.09 -1.86 3.12 -11.20 -0.04 -1.90 15 14 H 0.15 2.14 8.14 -2.39 -0.02 2.12 15 15 C -0.08 -1.29 6.57 72.33 0.48 -0.82 15 16 S -0.15 -2.84 22.85 -56.49 -1.29 -4.13 15 17 C 0.37 8.82 7.83 71.16 0.56 9.37 15 18 O -0.45 -13.83 18.03 -3.20 -0.06 -13.89 15 19 C -0.17 -3.93 5.36 29.76 0.16 -3.77 15 20 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 21 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 15 22 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 15 23 H 0.41 11.15 8.29 -92.71 -0.77 10.38 15 24 H 0.11 1.92 7.95 -2.39 -0.02 1.90 15 25 H 0.16 1.49 8.14 -2.39 -0.02 1.47 15 26 H 0.12 2.61 8.14 -2.39 -0.02 2.60 15 27 H 0.11 3.05 7.18 -2.39 -0.02 3.03 15 Total: -1.00 -69.17 256.17 1.72 -67.45 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.43 Total: 7.87 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 2.94 Total: 7.20 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.27 Total: -80.80 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.10 Total: -39.74 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.29 Total: -4.13 kcal Total: -69.17 1.72 -67.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307657222.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.201 kcal (2) G-P(sol) polarization free energy of solvation -69.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds