Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29488 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47282 * 274.25544 * 3 2 1 5 5 H 1.48497 * 109.46988 * 34.25599 * 3 2 1 6 6 H 1.48501 * 109.47354 * 154.25413 * 3 2 1 7 7 C 1.46573 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99878 * 341.48712 * 7 2 1 9 9 C 1.40029 * 120.00042 * 161.21527 * 7 2 1 10 10 C 1.41481 * 120.24189 * 334.42382 * 9 7 2 11 11 C 1.36265 * 119.77341 * 180.02562 * 10 9 7 12 12 C 1.39229 * 120.28577 * 0.02562 * 11 10 9 13 13 F 1.35094 * 119.75143 * 180.02562 * 12 11 10 14 14 C 1.39502 * 120.49530 * 359.97438 * 12 11 10 15 15 F 1.35093 * 119.88531 * 179.97438 * 14 12 11 16 16 C 1.36445 * 120.21982 * 359.71416 * 14 12 11 17 17 N 1.48016 * 120.14508 * 180.30148 * 16 14 12 18 18 O 1.31699 * 120.00378 * 270.26303 * 17 16 14 19 19 O 1.31703 * 119.99708 * 90.25672 * 17 16 14 20 20 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.10915 * 0.03061 * 10 9 7 22 22 H 1.07997 * 119.85578 * 180.02562 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 2.3864 2.0984 -1.3962 5 1 1.4742 2.6250 0.7881 6 1 3.5685 1.4159 0.6082 7 6 2.0277 -1.2694 -0.0006 8 1 1.5296 -2.1806 0.2960 9 6 3.3721 -1.3015 -0.3911 10 6 3.8836 -0.3147 -1.2664 11 6 5.1932 -0.3554 -1.6407 12 6 6.0282 -1.3634 -1.1659 13 9 7.3249 -1.3931 -1.5435 14 6 5.5360 -2.3422 -0.3023 15 9 6.3569 -3.3148 0.1505 16 6 4.2296 -2.3173 0.0906 17 7 3.7107 -3.3529 1.0122 18 8 3.2039 -4.4689 0.5306 19 8 3.7560 -3.1582 2.3140 20 1 -0.4851 0.8400 0.0004 21 1 3.2383 0.4682 -1.6366 22 1 5.5852 0.3974 -2.3085 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307667181.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = -55.402241 kcal Electronic energy + Delta-G solvation = -15593.820505 eV Core-core repulsion = 12368.117505 eV Total energy + Delta-G solvation = -3225.703000 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.89888 -47.80572 -38.82664 -37.20743 -34.37811 -33.49450 -31.17416 -30.66441 -26.53389 -24.82247 -22.35236 -21.42425 -18.72566 -18.06309 -17.39480 -17.00229 -16.21780 -15.80490 -15.60860 -15.37751 -14.45134 -14.31378 -13.89638 -13.60824 -13.42331 -12.58066 -12.16792 -11.85492 -11.31342 -11.22837 -10.93833 -10.62435 -10.49895 -10.15657 -9.91166 -9.86578 -8.77636 -8.30504 -7.90895 -5.42961 0.67065 1.49764 1.71760 2.11461 2.54266 2.70293 2.75846 3.30443 3.51192 4.32491 4.43849 5.10360 5.24772 5.50611 5.70368 5.97041 6.01893 6.40997 6.60576 6.65995 6.84137 7.13538 7.28723 7.54689 7.62501 7.70672 9.01251 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.013475 C = 0.009467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.432902 B = 2077.497288 C = 2957.017420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.075 3.925 3 Si 0.925 3.075 4 H -0.253 1.253 5 H -0.273 1.273 6 H -0.230 1.230 7 C -0.376 4.376 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.208 4.208 11 C -0.048 4.048 12 C -0.094 4.094 13 F -0.148 7.148 14 C 0.180 3.820 15 F -0.137 7.137 16 C -0.158 4.158 17 N 0.007 4.993 18 O -0.172 6.172 19 O -0.158 6.158 20 H 0.310 0.690 21 H 0.130 0.870 22 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.822 5.124 -2.423 6.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.160 4.160 3 Si 0.747 3.253 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.153 1.153 7 C -0.399 4.399 8 H 0.123 0.877 9 C 0.105 3.895 10 C -0.227 4.227 11 C -0.067 4.067 12 C -0.115 4.115 13 F -0.127 7.127 14 C 0.158 3.842 15 F -0.115 7.115 16 C -0.242 4.242 17 N 0.503 4.497 18 O -0.375 6.375 19 O -0.365 6.365 20 H 0.123 0.877 21 H 0.147 0.853 22 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.832 5.661 -2.883 6.956 hybrid contribution 0.253 -0.001 0.253 0.357 sum 3.085 5.660 -2.630 6.962 Atomic orbital electron populations 1.68934 1.09473 1.33383 1.21621 1.27984 0.94957 1.02922 0.90089 0.86082 0.82001 0.76954 0.80276 1.17849 1.19886 1.15263 1.21112 0.92286 0.96145 1.30316 0.87694 1.16773 0.92118 0.89112 0.91485 1.20615 0.95471 1.02725 1.03868 1.20383 0.92978 0.95676 0.97672 1.16627 0.80597 1.02971 1.11336 1.91368 1.33635 1.96773 1.90906 1.16537 0.85302 0.86873 0.95474 1.91476 1.72072 1.60587 1.87397 1.19134 0.92848 1.01196 1.11009 1.49941 0.95610 1.01407 1.02722 1.96192 1.46543 1.13346 1.81377 1.96182 1.61306 1.85967 0.93084 0.87721 0.85306 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -15.35 13.89 55.99 0.78 -14.57 14 2 C 0.07 1.60 5.58 -15.18 -0.08 1.51 14 3 Si 0.92 16.25 24.57 -169.99 -4.18 12.07 14 4 H -0.25 -4.05 6.69 56.52 0.38 -3.67 14 5 H -0.27 -4.54 7.11 56.52 0.40 -4.14 14 6 H -0.23 -4.24 6.85 56.52 0.39 -3.85 14 7 C -0.38 -9.03 9.49 -35.55 -0.34 -9.37 14 8 H 0.11 2.78 7.74 -52.49 -0.41 2.37 14 9 C 0.11 2.56 5.27 -106.79 -0.56 1.99 14 10 C -0.21 -4.18 7.25 -39.06 -0.28 -4.46 14 11 C -0.05 -0.90 9.96 -39.92 -0.40 -1.30 14 12 C -0.09 -1.97 7.35 -38.74 -0.28 -2.26 14 13 F -0.15 -2.99 17.17 2.25 0.04 -2.95 14 14 C 0.18 4.14 7.26 -39.76 -0.29 3.85 14 15 F -0.14 -3.15 16.97 2.25 0.04 -3.11 14 16 C -0.16 -3.83 6.28 -79.40 -0.50 -4.33 14 17 N 0.01 0.19 3.89 34.23 0.13 0.32 14 18 O -0.17 -4.35 19.97 -31.57 -0.63 -4.98 14 19 O -0.16 -3.99 19.97 -31.57 -0.63 -4.62 14 20 H 0.31 5.64 8.27 -40.82 -0.34 5.30 14 21 H 0.13 2.34 4.27 -52.48 -0.22 2.12 14 22 H 0.13 1.96 8.06 -52.49 -0.42 1.54 14 LS Contribution 223.84 15.07 3.37 3.37 Total: -1.00 -25.13 223.84 -4.04 -29.16 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.22 Total: -0.34 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.74 Total: -14.36 kcal Atomic # 7 Polarization: -15.16 SS G_CDS: 0.91 Total: -14.25 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.26 Total: -9.59 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.08 Total: -6.07 kcal Atomic # 14 Polarization: 16.25 SS G_CDS: -4.18 Total: 12.07 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -25.13 -4.04 -29.16 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307667181.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.240 kcal (2) G-P(sol) polarization free energy of solvation -25.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds