Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48496 * 109.46996 * 274.98294 * 3 2 1 5 5 H 1.48503 * 109.46797 * 34.98031 * 3 2 1 6 6 H 1.48492 * 109.47253 * 154.98140 * 3 2 1 7 7 C 1.40052 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 186.14873 * 7 2 1 9 9 C 1.46376 * 119.99512 * 6.15687 * 7 2 1 10 10 O 1.21686 * 120.00449 * 353.93843 * 9 7 2 11 11 N 1.34782 * 119.99573 * 173.93705 * 9 7 2 12 12 C 1.46495 * 119.99771 * 179.97438 * 11 9 7 13 13 C 1.50705 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.34487 * 125.77942 * 90.00099 * 13 12 11 15 15 C 1.41404 * 106.85326 * 180.02562 * 14 13 12 16 16 C 1.34649 * 106.82868 * 0.24619 * 15 14 13 17 17 Cl 1.73601 * 125.80073 * 179.76223 * 16 15 14 18 18 O 1.34307 * 108.39930 * 359.60377 * 16 15 14 19 19 H 0.96995 * 120.00163 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00146 * 359.97438 * 11 9 7 21 21 H 1.09007 * 109.47345 * 59.99994 * 12 11 9 22 22 H 1.08992 * 109.47472 * 300.00362 * 12 11 9 23 23 H 1.08004 * 126.56984 * 0.02594 * 14 13 12 24 24 H 1.08000 * 126.58141 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1349 10 8 0.0645 -2.4828 -0.1369 11 7 1.9612 -3.6343 -0.2573 12 6 1.2350 -4.8994 -0.3922 13 6 2.2201 -6.0338 -0.5113 14 6 2.7327 -6.7406 0.5115 15 6 3.6080 -7.6987 -0.0502 16 6 3.5818 -7.5159 -1.3840 17 17 4.4853 -8.4287 -2.5520 18 8 2.7353 -6.5097 -1.6574 19 1 -0.4850 0.8400 -0.0004 20 1 2.9312 -3.6295 -0.2560 21 1 0.6093 -4.8659 -1.2842 22 1 0.6079 -5.0539 0.4858 23 1 2.5172 -6.6029 1.5608 24 1 4.1895 -8.4328 0.4877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307755610.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -27.972612 kcal Electronic energy + Delta-G solvation = -13043.565578 eV Core-core repulsion = 10370.848696 eV Total energy + Delta-G solvation = -2672.716882 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.62251 -37.38429 -37.04788 -33.84261 -32.96608 -32.35370 -29.75735 -26.71246 -24.70223 -21.95257 -20.63819 -19.79354 -17.98342 -17.11440 -16.30393 -15.40670 -14.90616 -14.22307 -14.02847 -13.57642 -13.27427 -12.91729 -12.47017 -12.27157 -12.05407 -11.53872 -11.30396 -11.18186 -10.94915 -10.51392 -10.25814 -9.98864 -8.89110 -8.50896 -7.67902 -7.66500 -6.24590 -4.69115 1.14803 1.50624 2.47966 3.12661 3.20018 3.23575 3.44021 4.08877 4.52723 4.81195 4.88531 4.99729 5.52883 5.61486 5.75132 5.78985 6.04728 6.14860 6.41263 7.01464 7.39872 7.80328 7.94165 8.26488 8.97708 9.41026 10.52105 10.70029 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.050651 B = 0.005133 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.673703 B = 5454.047420 C = 5708.257104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.579 6.579 11 N -0.764 5.764 12 C 0.208 3.792 13 C 0.013 3.987 14 C -0.196 4.196 15 C -0.173 4.173 16 C 0.015 3.985 17 Cl 0.015 6.985 18 O -0.164 6.164 19 H 0.269 0.731 20 H 0.384 0.616 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.159 0.841 24 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -12.943 -1.001 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.422 5.422 12 C 0.084 3.916 13 C -0.038 4.038 14 C -0.216 4.216 15 C -0.194 4.194 16 C -0.062 4.062 17 Cl 0.044 6.956 18 O -0.062 6.062 19 H 0.080 0.920 20 H 0.216 0.784 21 H 0.088 0.912 22 H 0.106 0.894 23 H 0.177 0.823 24 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.059 -12.812 -1.396 14.694 hybrid contribution 1.155 0.487 -0.101 1.258 sum 8.214 -12.325 -1.497 14.886 Atomic orbital electron populations 1.70015 1.07109 1.27439 1.34934 1.25711 0.94629 1.00359 0.92538 0.86325 0.80221 0.81299 0.78734 1.19758 1.20389 1.18838 1.20859 0.94192 0.89283 1.53692 0.91221 1.18275 0.87158 0.82068 0.76471 1.90611 1.13994 1.86131 1.55461 1.46293 1.08939 1.04664 1.82286 1.19408 0.89862 0.79688 1.02682 1.23007 0.99830 0.99018 0.81897 1.21638 1.01137 0.98222 1.00609 1.21508 1.03712 1.03150 0.90992 1.22372 0.98906 0.94581 0.90304 1.98409 1.69388 1.68167 1.59638 1.83993 1.46955 1.40162 1.35051 0.91993 0.78390 0.91224 0.89416 0.82304 0.82490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.72 11.85 55.55 0.66 -22.06 14 2 C 0.09 2.42 5.49 -17.37 -0.10 2.33 14 3 Si 0.91 19.93 29.56 -169.99 -5.03 14.90 14 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 14 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 14 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 14 7 C -0.54 -15.19 9.54 -35.63 -0.34 -15.53 14 8 H 0.07 1.79 7.85 -52.49 -0.41 1.38 14 9 C 0.56 15.59 7.74 -12.98 -0.10 15.49 14 10 O -0.58 -18.43 15.05 5.20 0.08 -18.35 14 11 N -0.76 -16.96 5.54 -62.90 -0.35 -17.31 14 12 C 0.21 3.94 6.20 -5.19 -0.03 3.90 14 13 C 0.01 0.21 6.69 -35.63 -0.24 -0.02 14 14 C -0.20 -2.69 10.81 -39.70 -0.43 -3.12 14 15 C -0.17 -2.15 10.88 -39.65 -0.43 -2.58 14 16 C 0.01 0.20 7.93 29.46 0.23 0.44 14 17 Cl 0.02 0.17 29.30 -51.86 -1.52 -1.35 14 18 O -0.16 -2.68 10.65 5.51 0.06 -2.62 14 19 H 0.27 7.22 8.29 -40.82 -0.34 6.88 14 20 H 0.38 7.71 8.44 -40.82 -0.34 7.37 14 21 H 0.07 1.39 8.14 -51.92 -0.42 0.96 14 22 H 0.09 1.63 8.14 -51.93 -0.42 1.20 14 23 H 0.16 1.89 8.06 -52.48 -0.42 1.46 14 24 H 0.16 1.49 8.06 -52.49 -0.42 1.06 14 LS Contribution 245.56 15.07 3.70 3.70 Total: -1.00 -32.66 245.56 -5.41 -38.08 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -1.58 Total: 4.10 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.43 Total: 0.90 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.31 Total: -39.37 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.14 Total: -20.97 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.52 Total: -1.35 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.66 -5.41 -38.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307755610.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.104 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds