Wall clock time and date at job start Mon Mar 30 2020 03:14:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30666 * 1
3 3 Si 1.86802 * 120.00046 * 2 1
4 4 H 1.48496 * 109.46996 * 274.98294 * 3 2 1
5 5 H 1.48503 * 109.46797 * 34.98031 * 3 2 1
6 6 H 1.48492 * 109.47253 * 154.98140 * 3 2 1
7 7 C 1.40052 * 120.00282 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00099 * 186.14873 * 7 2 1
9 9 C 1.46376 * 119.99512 * 6.15687 * 7 2 1
10 10 O 1.21686 * 120.00449 * 353.93843 * 9 7 2
11 11 N 1.34782 * 119.99573 * 173.93705 * 9 7 2
12 12 C 1.46495 * 119.99771 * 179.97438 * 11 9 7
13 13 C 1.50705 * 109.47089 * 180.02562 * 12 11 9
14 14 C 1.34487 * 125.77942 * 90.00099 * 13 12 11
15 15 C 1.41404 * 106.85326 * 180.02562 * 14 13 12
16 16 C 1.34649 * 106.82868 * 0.24619 * 15 14 13
17 17 Cl 1.73601 * 125.80073 * 179.76223 * 16 15 14
18 18 O 1.34307 * 108.39930 * 359.60377 * 16 15 14
19 19 H 0.96995 * 120.00163 * 0.02562 * 1 2 3
20 20 H 0.97001 * 120.00146 * 359.97438 * 11 9 7
21 21 H 1.09007 * 109.47345 * 59.99994 * 12 11 9
22 22 H 1.08992 * 109.47472 * 300.00362 * 12 11 9
23 23 H 1.08004 * 126.56984 * 0.02594 * 14 13 12
24 24 H 1.08000 * 126.58141 * 179.97438 * 15 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3067 0.0000 0.0000
3 14 2.2407 1.6177 0.0000
4 1 2.3829 2.1072 -1.3948
5 1 1.4947 2.6200 0.8027
6 1 3.5869 1.4121 0.5921
7 6 2.0070 -1.2129 0.0005
8 1 3.0823 -1.2155 0.1007
9 6 1.2814 -2.4769 -0.1349
10 8 0.0645 -2.4828 -0.1369
11 7 1.9612 -3.6343 -0.2573
12 6 1.2350 -4.8994 -0.3922
13 6 2.2201 -6.0338 -0.5113
14 6 2.7327 -6.7406 0.5115
15 6 3.6080 -7.6987 -0.0502
16 6 3.5818 -7.5159 -1.3840
17 17 4.4853 -8.4287 -2.5520
18 8 2.7353 -6.5097 -1.6574
19 1 -0.4850 0.8400 -0.0004
20 1 2.9312 -3.6295 -0.2560
21 1 0.6093 -4.8659 -1.2842
22 1 0.6079 -5.0539 0.4858
23 1 2.5172 -6.6029 1.5608
24 1 4.1895 -8.4328 0.4877
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307755610.mol2 24
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:58
Heat of formation + Delta-G solvation = -51.513332 kcal
Electronic energy + Delta-G solvation = -13044.586380 eV
Core-core repulsion = 10370.848696 eV
Total energy + Delta-G solvation = -2673.737684 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 229.029 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-43.76710 -39.41861 -38.03745 -35.61929 -34.54784 -34.09177 -31.26254 -28.59721
-26.31749 -23.05013 -22.04382 -21.61225 -19.58800 -18.59331 -17.63027 -17.36815
-16.41864 -15.95950 -15.77325 -15.07855 -14.45235 -14.32615 -13.97310 -13.76762
-13.25684 -13.11196 -13.05966 -12.74196 -12.61769 -12.33120 -11.99742 -11.06871
-10.93809 -10.04522 -9.61744 -9.47933 -8.31378 -6.87234 0.11989 0.35334
1.39574 1.42603 1.43322 1.59244 2.22540 2.29012 2.45027 3.17973
3.56074 3.68404 3.88313 4.35371 4.44179 4.56308 4.73765 4.85225
5.32028 5.32587 5.83207 5.85761 6.05932 6.21860 6.85450 7.44101
8.42749 8.63954
Molecular weight = 229.03amu
Principal moments of inertia in cm(-1)
A = 0.050651 B = 0.005133 C = 0.004904
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 552.673703 B = 5454.047420 C = 5708.257104
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.819 5.819
2 C 0.030 3.970
3 Si 0.999 3.001
4 H -0.265 1.265
5 H -0.271 1.271
6 H -0.248 1.248
7 C -0.572 4.572
8 H 0.088 0.912
9 C 0.540 3.460
10 O -0.628 6.628
11 N -0.752 5.752
12 C 0.214 3.786
13 C -0.016 4.016
14 C -0.175 4.175
15 C -0.163 4.163
16 C 0.006 3.994
17 Cl 0.036 6.964
18 O -0.187 6.187
19 H 0.276 0.724
20 H 0.396 0.604
21 H 0.051 0.949
22 H 0.090 0.910
23 H 0.179 0.821
24 H 0.193 0.807
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.375 -13.305 -0.505 16.880
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.449 5.449
2 C -0.185 4.185
3 Si 0.818 3.182
4 H -0.189 1.189
5 H -0.196 1.196
6 H -0.171 1.171
7 C -0.608 4.608
8 H 0.106 0.894
9 C 0.345 3.655
10 O -0.515 6.515
11 N -0.408 5.408
12 C 0.090 3.910
13 C -0.066 4.066
14 C -0.195 4.195
15 C -0.183 4.183
16 C -0.070 4.070
17 Cl 0.064 6.936
18 O -0.086 6.086
19 H 0.086 0.914
20 H 0.229 0.771
21 H 0.069 0.931
22 H 0.107 0.893
23 H 0.196 0.804
24 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges 9.326 -13.227 -0.901 16.209
hybrid contribution 0.511 0.436 -0.289 0.731
sum 9.836 -12.791 -1.191 16.180
Atomic orbital electron populations
1.70169 1.09520 1.29138 1.36037 1.26967 0.95523 1.04921 0.91137
0.84985 0.78947 0.75100 0.79137 1.18944 1.19571 1.17135 1.21407
0.95281 0.90049 1.54104 0.89378 1.18608 0.86789 0.83851 0.76222
1.90564 1.15987 1.87307 1.57690 1.45927 1.09427 1.04763 1.80723
1.19251 0.90408 0.79445 1.01921 1.22427 1.01475 0.99795 0.82875
1.21958 0.99589 0.96990 1.00963 1.21903 1.03026 1.02974 0.90399
1.22845 0.98428 0.94068 0.91636 1.98419 1.68646 1.67381 1.59123
1.83938 1.47911 1.41308 1.35426 0.91394 0.77067 0.93066 0.89253
0.80356 0.79029
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -49.67 11.85 21.84 0.26 -49.41 14
2 C 0.03 1.66 5.49 85.31 0.47 2.13 14
3 Si 1.00 40.49 29.56 68.60 2.03 42.52 14
4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 14
5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14
6 H -0.25 -9.31 7.11 99.48 0.71 -8.61 14
7 C -0.57 -32.19 9.54 24.83 0.24 -31.95 14
8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 14
9 C 0.54 31.12 7.74 86.36 0.67 31.79 14
10 O -0.63 -41.59 15.05 -4.30 -0.06 -41.65 14
11 N -0.75 -33.90 5.54 -471.14 -2.61 -36.51 14
12 C 0.21 8.27 6.20 85.64 0.53 8.80 14
13 C -0.02 -0.49 6.69 24.83 0.17 -0.33 14
14 C -0.18 -4.39 10.81 22.19 0.24 -4.15 14
15 C -0.16 -3.53 10.88 22.23 0.24 -3.29 14
16 C 0.01 0.16 7.93 67.00 0.53 0.69 14
17 Cl 0.04 0.73 29.30 -2.72 -0.08 0.65 14
18 O -0.19 -5.98 10.65 -3.20 -0.03 -6.01 14
19 H 0.28 15.09 8.29 -92.71 -0.77 14.33 14
20 H 0.40 15.82 8.44 -92.71 -0.78 15.04 14
21 H 0.05 2.15 8.14 -2.38 -0.02 2.13 14
22 H 0.09 3.40 8.14 -2.39 -0.02 3.38 14
23 H 0.18 3.71 8.06 -2.91 -0.02 3.68 14
24 H 0.19 2.74 8.06 -2.91 -0.02 2.72 14
Total: -1.00 -72.12 245.56 3.04 -69.08
By element:
Atomic # 1 Polarization: 17.18 SS G_CDS: 0.46 Total: 17.64 kcal
Atomic # 6 Polarization: 0.61 SS G_CDS: 3.08 Total: 3.70 kcal
Atomic # 7 Polarization: -83.57 SS G_CDS: -2.35 Total: -85.92 kcal
Atomic # 8 Polarization: -47.57 SS G_CDS: -0.10 Total: -47.66 kcal
Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal
Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal
Total: -72.12 3.04 -69.08 kcal
The number of atoms in the molecule is 24
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307755610.mol2 24
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.565 kcal
(2) G-P(sol) polarization free energy of solvation -72.120 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.555 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.513 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds