Wall clock time and date at job start Mon Mar 30 2020 03:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 120.00046 * 2 1 4 4 H 1.48496 * 109.46996 * 274.98294 * 3 2 1 5 5 H 1.48503 * 109.46797 * 34.98031 * 3 2 1 6 6 H 1.48492 * 109.47253 * 154.98140 * 3 2 1 7 7 C 1.40052 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00099 * 186.14873 * 7 2 1 9 9 C 1.46376 * 119.99512 * 6.15687 * 7 2 1 10 10 O 1.21686 * 120.00449 * 353.93843 * 9 7 2 11 11 N 1.34782 * 119.99573 * 173.93705 * 9 7 2 12 12 C 1.46495 * 119.99771 * 179.97438 * 11 9 7 13 13 C 1.50705 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.34487 * 125.77942 * 90.00099 * 13 12 11 15 15 C 1.41404 * 106.85326 * 180.02562 * 14 13 12 16 16 C 1.34649 * 106.82868 * 0.24619 * 15 14 13 17 17 Cl 1.73601 * 125.80073 * 179.76223 * 16 15 14 18 18 O 1.34307 * 108.39930 * 359.60377 * 16 15 14 19 19 H 0.96995 * 120.00163 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00146 * 359.97438 * 11 9 7 21 21 H 1.09007 * 109.47345 * 59.99994 * 12 11 9 22 22 H 1.08992 * 109.47472 * 300.00362 * 12 11 9 23 23 H 1.08004 * 126.56984 * 0.02594 * 14 13 12 24 24 H 1.08000 * 126.58141 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2129 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1349 10 8 0.0645 -2.4828 -0.1369 11 7 1.9612 -3.6343 -0.2573 12 6 1.2350 -4.8994 -0.3922 13 6 2.2201 -6.0338 -0.5113 14 6 2.7327 -6.7406 0.5115 15 6 3.6080 -7.6987 -0.0502 16 6 3.5818 -7.5159 -1.3840 17 17 4.4853 -8.4287 -2.5520 18 8 2.7353 -6.5097 -1.6574 19 1 -0.4850 0.8400 -0.0004 20 1 2.9312 -3.6295 -0.2560 21 1 0.6093 -4.8659 -1.2842 22 1 0.6079 -5.0539 0.4858 23 1 2.5172 -6.6029 1.5608 24 1 4.1895 -8.4328 0.4877 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307755610.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:58 Heat of formation + Delta-G solvation = -51.513332 kcal Electronic energy + Delta-G solvation = -13044.586380 eV Core-core repulsion = 10370.848696 eV Total energy + Delta-G solvation = -2673.737684 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.76710 -39.41861 -38.03745 -35.61929 -34.54784 -34.09177 -31.26254 -28.59721 -26.31749 -23.05013 -22.04382 -21.61225 -19.58800 -18.59331 -17.63027 -17.36815 -16.41864 -15.95950 -15.77325 -15.07855 -14.45235 -14.32615 -13.97310 -13.76762 -13.25684 -13.11196 -13.05966 -12.74196 -12.61769 -12.33120 -11.99742 -11.06871 -10.93809 -10.04522 -9.61744 -9.47933 -8.31378 -6.87234 0.11989 0.35334 1.39574 1.42603 1.43322 1.59244 2.22540 2.29012 2.45027 3.17973 3.56074 3.68404 3.88313 4.35371 4.44179 4.56308 4.73765 4.85225 5.32028 5.32587 5.83207 5.85761 6.05932 6.21860 6.85450 7.44101 8.42749 8.63954 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.050651 B = 0.005133 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.673703 B = 5454.047420 C = 5708.257104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.248 1.248 7 C -0.572 4.572 8 H 0.088 0.912 9 C 0.540 3.460 10 O -0.628 6.628 11 N -0.752 5.752 12 C 0.214 3.786 13 C -0.016 4.016 14 C -0.175 4.175 15 C -0.163 4.163 16 C 0.006 3.994 17 Cl 0.036 6.964 18 O -0.187 6.187 19 H 0.276 0.724 20 H 0.396 0.604 21 H 0.051 0.949 22 H 0.090 0.910 23 H 0.179 0.821 24 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 -13.305 -0.505 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.608 4.608 8 H 0.106 0.894 9 C 0.345 3.655 10 O -0.515 6.515 11 N -0.408 5.408 12 C 0.090 3.910 13 C -0.066 4.066 14 C -0.195 4.195 15 C -0.183 4.183 16 C -0.070 4.070 17 Cl 0.064 6.936 18 O -0.086 6.086 19 H 0.086 0.914 20 H 0.229 0.771 21 H 0.069 0.931 22 H 0.107 0.893 23 H 0.196 0.804 24 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 9.326 -13.227 -0.901 16.209 hybrid contribution 0.511 0.436 -0.289 0.731 sum 9.836 -12.791 -1.191 16.180 Atomic orbital electron populations 1.70169 1.09520 1.29138 1.36037 1.26967 0.95523 1.04921 0.91137 0.84985 0.78947 0.75100 0.79137 1.18944 1.19571 1.17135 1.21407 0.95281 0.90049 1.54104 0.89378 1.18608 0.86789 0.83851 0.76222 1.90564 1.15987 1.87307 1.57690 1.45927 1.09427 1.04763 1.80723 1.19251 0.90408 0.79445 1.01921 1.22427 1.01475 0.99795 0.82875 1.21958 0.99589 0.96990 1.00963 1.21903 1.03026 1.02974 0.90399 1.22845 0.98428 0.94068 0.91636 1.98419 1.68646 1.67381 1.59123 1.83938 1.47911 1.41308 1.35426 0.91394 0.77067 0.93066 0.89253 0.80356 0.79029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.67 11.85 21.84 0.26 -49.41 14 2 C 0.03 1.66 5.49 85.31 0.47 2.13 14 3 Si 1.00 40.49 29.56 68.60 2.03 42.52 14 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 14 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 14 6 H -0.25 -9.31 7.11 99.48 0.71 -8.61 14 7 C -0.57 -32.19 9.54 24.83 0.24 -31.95 14 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 14 9 C 0.54 31.12 7.74 86.36 0.67 31.79 14 10 O -0.63 -41.59 15.05 -4.30 -0.06 -41.65 14 11 N -0.75 -33.90 5.54 -471.14 -2.61 -36.51 14 12 C 0.21 8.27 6.20 85.64 0.53 8.80 14 13 C -0.02 -0.49 6.69 24.83 0.17 -0.33 14 14 C -0.18 -4.39 10.81 22.19 0.24 -4.15 14 15 C -0.16 -3.53 10.88 22.23 0.24 -3.29 14 16 C 0.01 0.16 7.93 67.00 0.53 0.69 14 17 Cl 0.04 0.73 29.30 -2.72 -0.08 0.65 14 18 O -0.19 -5.98 10.65 -3.20 -0.03 -6.01 14 19 H 0.28 15.09 8.29 -92.71 -0.77 14.33 14 20 H 0.40 15.82 8.44 -92.71 -0.78 15.04 14 21 H 0.05 2.15 8.14 -2.38 -0.02 2.13 14 22 H 0.09 3.40 8.14 -2.39 -0.02 3.38 14 23 H 0.18 3.71 8.06 -2.91 -0.02 3.68 14 24 H 0.19 2.74 8.06 -2.91 -0.02 2.72 14 Total: -1.00 -72.12 245.56 3.04 -69.08 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 0.46 Total: 17.64 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 3.08 Total: 3.70 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.35 Total: -85.92 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -0.10 Total: -47.66 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -72.12 3.04 -69.08 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307755610.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.565 kcal (2) G-P(sol) polarization free energy of solvation -72.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds