Wall clock time and date at job start Mon Mar 30 2020 03:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48495 * 109.47383 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47375 * 300.00381 * 3 2 1 6 6 H 1.48505 * 109.46965 * 60.00065 * 3 2 1 7 7 C 1.38801 * 119.99737 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99873 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99878 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99507 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00020 * 179.97438 * 11 10 9 14 14 C 1.38855 * 119.99672 * 180.02562 * 13 11 10 15 15 N 1.31385 * 126.42401 * 179.68684 * 14 13 11 16 16 N 1.28431 * 110.52148 * 179.85186 * 15 14 13 17 17 N 1.28919 * 110.29802 * 0.42312 * 16 15 14 18 18 N 1.35263 * 126.43029 * 359.97438 * 14 13 11 19 19 H 0.96998 * 127.37888 * 359.97438 * 18 14 13 20 20 H 0.97001 * 119.99701 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46925 * 60.00038 * 10 9 7 22 22 H 1.09000 * 109.47556 * 300.00312 * 10 9 7 23 23 H 0.96994 * 119.99756 * 0.02562 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3028 0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0003 14 6 2.3570 -7.6435 -0.0003 15 7 3.0734 -8.7449 -0.0064 16 7 2.3107 -9.7781 -0.0012 17 7 1.0723 -9.4199 -0.0004 18 7 1.0561 -8.0141 0.0007 19 1 0.2787 -7.4341 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 3.1244 -3.7314 0.8895 22 1 3.1245 -3.7314 -0.8905 23 1 3.8007 -6.1835 -0.0006 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307759772.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:14 Heat of formation + Delta-G solvation = 61.120457 kcal Electronic energy + Delta-G solvation = -12944.807785 eV Core-core repulsion = 10342.583477 eV Total energy + Delta-G solvation = -2602.224308 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.037 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.29987 -41.37014 -36.81533 -34.84433 -34.58757 -32.90913 -30.75427 -27.69091 -25.87028 -23.92961 -22.66160 -20.00072 -19.79314 -18.79701 -18.25722 -17.96020 -16.87516 -16.65590 -16.20382 -15.38271 -14.59285 -14.52979 -14.04664 -13.70545 -13.17841 -13.06259 -12.92055 -12.63647 -12.40643 -12.34135 -11.75552 -11.68940 -11.16404 -10.53873 -10.33323 -8.68814 -8.36595 -6.13961 -0.26955 0.44291 0.71756 1.21396 1.41444 1.43126 1.45049 1.56950 1.81747 2.24394 3.00075 3.10694 3.23772 3.50017 3.79006 3.99989 4.21940 4.38574 4.52553 5.44549 5.58245 5.70192 6.20105 6.42698 7.07368 7.21985 8.72374 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.098753 B = 0.005076 C = 0.004841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 283.466621 B = 5514.337667 C = 5782.659689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.017 3.983 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.090 0.910 9 S -0.138 6.138 10 C -0.128 4.128 11 C 0.555 3.445 12 O -0.528 6.528 13 N -0.599 5.599 14 C 0.485 3.515 15 N -0.355 5.355 16 N -0.033 5.033 17 N -0.086 5.086 18 N -0.471 5.471 19 H 0.464 0.536 20 H 0.271 0.729 21 H 0.134 0.866 22 H 0.134 0.866 23 H 0.458 0.542 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.002 -8.681 0.009 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.177 1.177 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.692 4.692 8 H 0.108 0.892 9 S 0.089 5.911 10 C -0.278 4.278 11 C 0.344 3.656 12 O -0.400 6.400 13 N -0.258 5.258 14 C 0.117 3.883 15 N -0.217 5.217 16 N -0.030 5.030 17 N -0.077 5.077 18 N -0.210 5.210 19 H 0.321 0.679 20 H 0.080 0.920 21 H 0.152 0.848 22 H 0.152 0.848 23 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges 6.111 -10.232 0.005 11.919 hybrid contribution 1.026 2.486 0.004 2.689 sum 7.137 -7.747 0.009 10.533 Atomic orbital electron populations 1.70157 1.07925 1.28590 1.48103 1.26038 0.95845 1.03192 0.93780 0.84965 0.78895 0.76701 0.77812 1.17731 1.20348 1.20361 1.23260 0.95658 0.91655 1.58653 0.89158 1.85608 1.09153 0.99131 1.97174 1.23369 1.04706 0.90516 1.09251 1.20734 0.85516 0.86593 0.72805 1.90577 1.17014 1.84748 1.47626 1.42741 1.13676 0.97680 1.71725 1.21818 0.82593 0.89319 0.94602 1.74743 1.25969 0.92730 1.28278 1.77933 0.95662 1.20014 1.09398 1.82523 1.14760 0.86852 1.23542 1.49624 1.08883 1.07538 1.54910 0.67937 0.92030 0.84776 0.84767 0.69628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.06 13.22 21.65 0.29 -51.77 14 2 C 0.02 0.86 5.49 84.86 0.47 1.33 14 3 Si 0.99 40.26 29.55 68.60 2.03 42.28 14 4 H -0.25 -9.48 7.11 99.48 0.71 -8.77 14 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 14 6 H -0.28 -11.12 7.11 99.48 0.71 -10.41 14 7 C -0.54 -27.55 9.50 67.95 0.65 -26.90 14 8 H 0.09 4.16 7.80 -2.91 -0.02 4.14 14 9 S -0.14 -6.48 20.57 -56.49 -1.16 -7.64 14 10 C -0.13 -3.70 6.16 71.24 0.44 -3.26 14 11 C 0.56 14.68 7.81 87.66 0.68 15.36 14 12 O -0.53 -17.65 13.45 -3.02 -0.04 -17.69 14 13 N -0.60 -11.47 5.40 -312.38 -1.69 -13.16 14 14 C 0.49 11.75 8.97 260.47 2.34 14.09 14 15 N -0.35 -9.32 12.19 -58.46 -0.71 -10.03 14 16 N -0.03 -0.95 13.38 37.02 0.50 -0.46 14 17 N -0.09 -2.42 14.01 37.02 0.52 -1.90 14 18 N -0.47 -12.28 7.12 -58.49 -0.42 -12.70 14 19 H 0.46 11.92 6.59 -213.00 -1.40 10.51 14 20 H 0.27 14.45 8.31 -92.71 -0.77 13.68 14 21 H 0.13 3.24 8.14 -2.39 -0.02 3.22 14 22 H 0.13 3.25 8.14 -2.40 -0.02 3.23 14 23 H 0.46 5.14 8.82 -92.71 -0.82 4.32 14 Total: -1.00 -65.87 235.96 2.95 -62.92 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -0.93 Total: 9.52 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.57 Total: 0.62 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -1.52 Total: -90.02 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.04 Total: -17.69 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: -6.48 SS G_CDS: -1.16 Total: -7.64 kcal Total: -65.87 2.95 -62.92 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307759772.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.040 kcal (2) G-P(sol) polarization free energy of solvation -65.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds