Wall clock time and date at job start Mon Mar 30 2020 03:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 S 1.80996 * 109.47276 * 179.72626 * 12 10 9 14 14 C 1.76195 * 99.99998 * 179.97438 * 13 12 10 15 15 N 1.31547 * 126.45551 * 0.02562 * 14 13 12 16 16 N 1.28411 * 110.50532 * 180.02562 * 15 14 13 17 17 N 1.28903 * 110.34340 * 0.02562 * 16 15 14 18 18 N 1.35397 * 126.45582 * 179.71470 * 14 13 12 19 19 H 0.97004 * 127.38008 * 359.97438 * 18 14 13 20 20 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 23 23 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 16 2.4196 -6.2387 -0.0061 14 6 1.2995 -7.5988 -0.0032 15 7 -0.0141 -7.5296 0.0028 16 7 -0.5266 -8.7070 0.0038 17 7 0.4027 -9.6003 -0.0009 18 7 1.6287 -8.9122 -0.0127 19 1 2.5195 -9.2960 -0.0227 20 1 -0.4850 0.8401 -0.0004 21 1 0.3532 -2.3906 0.0016 22 1 0.6209 -4.9225 0.8949 23 1 0.6128 -4.9187 -0.8850 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308213440.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:16 Heat of formation + Delta-G solvation = 74.765308 kcal Electronic energy + Delta-G solvation = -12860.894228 eV Core-core repulsion = 10259.261605 eV Total energy + Delta-G solvation = -2601.632623 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.037 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.92927 -38.34584 -34.21079 -33.99005 -32.33619 -31.52174 -29.47432 -25.06320 -24.50946 -23.07802 -20.04282 -19.11255 -18.11147 -17.17973 -16.47615 -16.13577 -14.72148 -14.66167 -14.61513 -13.85872 -13.17352 -12.68987 -12.58851 -12.31721 -11.66748 -11.50540 -11.25833 -11.15597 -10.84827 -10.65603 -10.54979 -10.35839 -9.70117 -8.80922 -8.20626 -7.93788 -6.58702 -4.01325 0.72146 0.77880 1.95330 2.14110 2.42564 3.08962 3.18729 3.22318 3.60362 4.03399 4.35041 4.66211 4.94790 5.05042 5.22288 5.46139 5.62357 5.98009 6.28721 7.39341 7.81845 8.30339 8.33770 8.95713 9.27972 9.75309 10.57679 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.073965 B = 0.005231 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.468486 B = 5351.566723 C = 5714.884739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.540 5.540 10 C 0.446 3.554 11 O -0.587 6.587 12 C -0.134 4.134 13 S 0.120 5.880 14 C 0.212 3.788 15 N -0.337 5.337 16 N -0.029 5.029 17 N -0.087 5.087 18 N -0.470 5.470 19 H 0.453 0.547 20 H 0.276 0.724 21 H 0.397 0.603 22 H 0.116 0.884 23 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -10.996 -0.023 11.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.125 0.875 9 N -0.175 5.175 10 C 0.230 3.770 11 O -0.474 6.474 12 C -0.286 4.286 13 S 0.344 5.656 14 C -0.174 4.174 15 N -0.195 5.195 16 N -0.026 5.026 17 N -0.076 5.076 18 N -0.198 5.198 19 H 0.301 0.699 20 H 0.086 0.914 21 H 0.231 0.769 22 H 0.134 0.866 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.740 -11.331 -0.025 11.658 hybrid contribution -0.241 0.695 -0.002 0.736 sum 2.499 -10.636 -0.027 10.926 Atomic orbital electron populations 1.69606 1.06056 1.28854 1.48597 1.25351 0.95683 1.00016 0.96473 0.85844 0.78796 0.79938 0.79262 1.19665 1.20784 1.19671 1.19716 0.93520 0.81763 1.48689 0.87517 1.41733 1.09562 1.04148 1.62014 1.18795 0.87783 0.83667 0.86772 1.90568 1.13136 1.86327 1.57397 1.23853 1.01245 0.94931 1.08610 1.86611 1.00868 0.88810 1.89264 1.28719 0.97785 0.92205 0.98659 1.75018 1.03490 1.16445 1.24565 1.77834 1.22130 0.93949 1.08655 1.82379 0.85021 1.17563 1.22608 1.49022 1.11358 1.03790 1.55667 0.69887 0.91375 0.76872 0.86555 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 13.05 55.50 0.72 -22.37 14 2 C 0.03 0.72 5.50 -17.47 -0.10 0.62 14 3 Si 0.94 19.93 29.55 -169.99 -5.02 14.91 14 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 14 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 14 7 C -0.31 -8.07 9.68 -14.93 -0.14 -8.22 14 8 H 0.11 2.91 7.16 -52.48 -0.38 2.54 14 9 N -0.54 -12.83 5.29 -10.96 -0.06 -12.89 14 10 C 0.45 9.70 7.80 -10.98 -0.09 9.61 14 11 O -0.59 -14.57 15.44 5.54 0.09 -14.48 14 12 C -0.13 -2.19 5.72 36.01 0.21 -1.98 14 13 S 0.12 1.70 21.45 -107.50 -2.31 -0.61 14 14 C 0.21 2.87 8.45 -89.17 -0.75 2.11 14 15 N -0.34 -5.33 11.57 30.50 0.35 -4.98 14 16 N -0.03 -0.46 13.38 60.35 0.81 0.35 14 17 N -0.09 -1.20 14.01 60.35 0.85 -0.36 14 18 N -0.47 -5.24 7.56 30.49 0.23 -5.01 14 19 H 0.45 3.12 8.96 -182.22 -1.63 1.49 14 20 H 0.28 6.78 8.31 -40.82 -0.34 6.44 14 21 H 0.40 9.03 7.90 -40.82 -0.32 8.70 14 22 H 0.12 1.75 8.14 -51.92 -0.42 1.33 14 23 H 0.12 1.75 8.14 -51.92 -0.42 1.33 14 LS Contribution 238.37 15.07 3.59 3.59 Total: -1.00 -30.13 238.37 -3.93 -34.06 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -2.31 Total: 5.64 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.87 Total: 2.15 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 2.90 Total: -45.26 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.09 Total: -14.48 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.31 Total: -0.61 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.13 -3.93 -34.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308213440.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.827 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds