Wall clock time and date at job start Mon Mar 30 2020 03:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46783 * 239.99878 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46865 * 120.00059 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 S 1.80996 * 109.47276 * 179.72626 * 12 10 9 14 14 C 1.76195 * 99.99998 * 179.97438 * 13 12 10 15 15 N 1.31547 * 126.45551 * 0.02562 * 14 13 12 16 16 N 1.28411 * 110.50532 * 180.02562 * 15 14 13 17 17 N 1.28903 * 110.34340 * 0.02562 * 16 15 14 18 18 N 1.35397 * 126.45582 * 179.71470 * 14 13 12 19 19 H 0.97004 * 127.38008 * 359.97438 * 18 14 13 20 20 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 23 23 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1018 1.6963 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 16 2.4196 -6.2387 -0.0061 14 6 1.2995 -7.5988 -0.0032 15 7 -0.0141 -7.5296 0.0028 16 7 -0.5266 -8.7070 0.0038 17 7 0.4027 -9.6003 -0.0009 18 7 1.6287 -8.9122 -0.0127 19 1 2.5195 -9.2960 -0.0227 20 1 -0.4850 0.8401 -0.0004 21 1 0.3532 -2.3906 0.0016 22 1 0.6209 -4.9225 0.8949 23 1 0.6128 -4.9187 -0.8850 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308213440.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:15 Heat of formation + Delta-G solvation = 51.644223 kcal Electronic energy + Delta-G solvation = -12861.896833 eV Core-core repulsion = 10259.261605 eV Total energy + Delta-G solvation = -2602.635229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.037 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.04023 -40.16047 -36.09496 -35.07299 -33.55819 -33.32082 -30.98704 -26.77012 -25.79842 -24.20501 -21.62042 -20.43647 -19.91030 -18.39519 -17.80468 -17.58604 -16.52544 -16.27582 -16.09569 -15.34070 -14.60330 -14.14601 -13.88419 -13.78396 -13.46753 -12.89612 -12.57504 -12.46582 -12.39744 -12.11619 -11.98310 -11.82284 -11.55528 -10.64012 -10.10578 -9.08107 -8.50396 -6.00722 -0.43455 -0.29201 0.70865 0.99445 1.39305 1.45523 1.48494 1.56277 1.88888 2.29146 2.99175 3.16356 3.27834 3.85731 4.08870 4.09393 4.15477 4.41970 5.39428 5.50180 5.89987 6.46055 7.03337 7.18614 7.41933 7.92729 8.65929 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.073965 B = 0.005231 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.468486 B = 5351.566723 C = 5714.884739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.995 3.005 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.553 5.553 10 C 0.452 3.548 11 O -0.619 6.619 12 C -0.132 4.132 13 S 0.145 5.855 14 C 0.215 3.785 15 N -0.357 5.357 16 N -0.051 5.051 17 N -0.083 5.083 18 N -0.444 5.444 19 H 0.472 0.528 20 H 0.280 0.720 21 H 0.401 0.599 22 H 0.132 0.868 23 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.703 -11.564 -0.027 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.189 5.189 10 C 0.237 3.763 11 O -0.507 6.507 12 C -0.284 4.284 13 S 0.369 5.631 14 C -0.172 4.172 15 N -0.216 5.216 16 N -0.048 5.048 17 N -0.072 5.072 18 N -0.176 5.176 19 H 0.325 0.675 20 H 0.090 0.910 21 H 0.235 0.765 22 H 0.151 0.849 23 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.093 -11.930 -0.029 12.325 hybrid contribution -0.286 0.728 -0.001 0.782 sum 2.807 -11.203 -0.030 11.549 Atomic orbital electron populations 1.69669 1.06992 1.29765 1.48946 1.26105 0.96494 1.02619 0.95649 0.84946 0.77747 0.76299 0.79145 1.19458 1.19734 1.19467 1.19721 0.93044 0.83398 1.50581 0.89391 1.41795 1.09688 1.04372 1.63019 1.19548 0.87612 0.84868 0.84247 1.90547 1.14847 1.87294 1.58042 1.23668 1.01465 0.93073 1.10237 1.86572 0.99310 0.87653 1.89584 1.28500 0.97166 0.92709 0.98817 1.74953 1.04530 1.16878 1.25213 1.77850 1.22867 0.94150 1.09946 1.82321 0.85551 1.17514 1.21854 1.48936 1.11811 1.02875 1.54003 0.67517 0.91021 0.76500 0.84948 0.84956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.19 13.05 21.66 0.28 -46.91 14 2 C -0.01 -0.38 5.50 84.93 0.47 0.09 14 3 Si 1.00 40.55 29.55 68.60 2.03 42.58 14 4 H -0.27 -10.82 7.11 99.48 0.71 -10.11 14 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 14 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 14 7 C -0.34 -17.97 9.68 84.04 0.81 -17.16 14 8 H 0.09 4.92 7.16 -2.91 -0.02 4.89 14 9 N -0.55 -26.46 5.29 -306.98 -1.62 -28.08 14 10 C 0.45 19.48 7.80 87.66 0.68 20.16 14 11 O -0.62 -30.64 15.44 -3.08 -0.05 -30.69 14 12 C -0.13 -4.13 5.72 71.24 0.41 -3.72 14 13 S 0.14 3.79 21.45 -56.49 -1.21 2.58 14 14 C 0.21 5.31 8.45 179.84 1.52 6.83 14 15 N -0.36 -10.66 11.57 -57.41 -0.66 -11.32 14 16 N -0.05 -1.55 13.38 37.02 0.50 -1.06 14 17 N -0.08 -2.13 14.01 37.02 0.52 -1.61 14 18 N -0.44 -8.77 7.56 -57.45 -0.43 -9.20 14 19 H 0.47 5.08 8.96 -213.00 -1.91 3.17 14 20 H 0.28 13.61 8.31 -92.71 -0.77 12.84 14 21 H 0.40 18.31 7.90 -92.71 -0.73 17.57 14 22 H 0.13 3.76 8.14 -2.39 -0.02 3.74 14 23 H 0.13 3.76 8.14 -2.40 -0.02 3.74 14 Total: -1.00 -63.54 238.37 1.88 -61.65 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -1.35 Total: 15.86 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 3.89 Total: 6.20 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -1.42 Total: -98.18 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.21 Total: 2.58 kcal Total: -63.54 1.88 -61.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308213440.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.296 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds