Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 N 1.46295 * 113.99729 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00247 * 244.21171 * 4 3 2 6 6 C 1.53036 * 109.52204 * 174.16193 * 5 4 3 7 7 C 1.53123 * 109.27916 * 59.18006 * 6 5 4 8 8 N 1.46905 * 109.52085 * 182.43778 * 7 6 5 9 9 C 1.46897 * 111.00103 * 274.68259 * 8 7 6 10 10 C 1.50698 * 109.47228 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00007 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46777 * 89.99937 * 14 12 10 16 16 H 1.48500 * 109.46981 * 209.99473 * 14 12 10 17 17 H 1.48490 * 109.47056 * 329.99900 * 14 12 10 18 18 C 1.53119 * 109.15905 * 302.34475 * 7 6 5 19 19 C 1.46847 * 110.99782 * 120.00048 * 4 3 2 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 23 23 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 25 25 H 1.08996 * 109.46444 * 294.17849 * 5 4 3 26 26 H 1.08999 * 109.45728 * 54.14893 * 5 4 3 27 27 H 1.09002 * 109.50971 * 299.23806 * 6 5 4 28 28 H 1.09001 * 109.53706 * 179.14296 * 6 5 4 29 29 H 1.09002 * 109.57149 * 62.28124 * 7 6 5 30 30 H 1.00900 * 110.99200 * 150.73179 * 8 7 6 31 31 H 1.09004 * 109.46944 * 300.00541 * 9 8 7 32 32 H 1.09005 * 109.46952 * 60.00139 * 9 8 7 33 33 H 0.96999 * 120.00396 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.50277 * 297.70657 * 18 7 6 35 35 H 1.09006 * 109.53338 * 177.61636 * 18 7 6 36 36 H 1.09005 * 109.46597 * 305.86006 * 19 4 3 37 37 H 1.09002 * 109.46170 * 65.83595 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4647 1.4629 0.0006 5 6 3.9418 2.0992 1.2351 6 6 5.4715 2.0718 1.2664 7 6 6.0156 2.8156 0.0435 8 7 7.4829 2.7425 0.0372 9 6 8.0667 3.8111 0.8588 10 6 9.5696 3.7044 0.8276 11 1 10.0436 2.9208 0.2551 12 6 10.3395 4.6071 1.5300 13 7 11.6511 4.5137 1.5032 14 14 9.5197 5.9620 2.5208 15 1 9.2666 5.4806 3.9026 16 1 10.4095 7.1500 2.5657 17 1 8.2315 6.3322 1.8818 18 6 5.4652 2.1629 -1.2276 19 6 3.9356 2.1876 -1.1866 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.5963 3.1324 1.2681 26 1 3.5511 1.5581 2.0969 27 1 5.8176 1.0383 1.2474 28 1 5.8263 2.5576 2.1754 29 1 5.7031 3.8591 0.0819 30 1 7.8423 2.7735 -0.9051 31 1 7.7633 4.7804 0.4632 32 1 7.7163 3.7121 1.8862 33 1 12.1928 5.1486 1.9977 34 1 5.8111 1.1309 -1.2858 35 1 5.8149 2.7137 -2.1008 36 1 3.5405 1.7109 -2.0837 37 1 3.5903 3.2206 -1.1422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323079972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -7.023957 kcal Electronic energy + Delta-G solvation = -16095.981237 eV Core-core repulsion = 13488.681537 eV Total energy + Delta-G solvation = -2607.299699 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.80836 -36.65452 -34.52310 -32.48194 -31.10974 -30.85146 -29.17927 -26.40827 -23.13733 -22.90124 -22.27805 -20.86155 -19.53725 -17.42135 -16.80010 -15.74379 -15.23266 -14.87049 -14.56786 -14.52057 -13.87777 -13.69485 -13.52081 -12.84071 -12.72033 -12.46982 -12.29945 -11.95844 -11.80076 -11.76331 -11.25518 -11.11161 -10.89739 -10.53421 -10.45259 -10.12731 -9.84481 -9.77813 -9.28064 -8.72253 -8.60306 -7.51553 -6.07187 -4.05215 2.47161 3.27472 3.34760 3.36822 4.40516 4.60766 4.79423 4.91798 4.94864 5.09993 5.11075 5.24370 5.25665 5.37003 5.40765 5.43412 5.61807 5.64958 5.76542 5.82723 5.86974 5.91276 5.93988 6.02551 6.22692 6.36803 6.57056 6.77987 6.78635 6.99135 7.05402 7.59676 7.88078 8.31337 8.63368 9.01039 9.54753 11.06116 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.059023 B = 0.004809 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.280377 B = 5821.432110 C = 6037.088603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 O -0.270 6.270 4 N -0.360 5.360 5 C 0.044 3.956 6 C -0.100 4.100 7 C 0.079 3.921 8 N -0.674 5.674 9 C 0.164 3.836 10 C -0.516 4.516 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.268 1.268 18 C -0.114 4.114 19 C 0.048 3.952 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.337 0.663 31 H -0.017 1.017 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.585 -6.217 -3.490 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.275 6.275 4 N -0.129 5.129 5 C -0.085 4.085 6 C -0.139 4.139 7 C -0.032 4.032 8 N -0.305 5.305 9 C 0.037 3.963 10 C -0.554 4.554 11 H 0.098 0.902 12 C -0.133 4.133 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.193 1.193 18 C -0.152 4.152 19 C -0.081 4.081 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.155 0.845 31 H 0.001 0.999 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.334 -6.893 -2.932 20.734 hybrid contribution -0.683 2.262 0.108 2.365 sum -20.016 -4.630 -2.823 20.738 Atomic orbital electron populations 1.21773 0.93961 1.02273 1.02769 1.22254 0.93568 0.84514 1.00621 1.90654 1.13448 1.26433 1.96932 1.67531 0.91065 1.50782 1.03474 1.22458 0.96387 0.97834 0.91798 1.21598 0.90698 1.02629 0.98987 1.21587 0.90633 0.96826 0.94113 1.60483 1.02050 1.51006 1.16964 1.20044 0.95968 0.87369 0.92969 1.21066 0.88644 1.14773 1.30957 0.90250 1.24908 0.94713 0.97428 0.96278 1.69898 1.04072 1.37278 1.42662 0.86832 0.79671 0.82037 0.81038 1.20100 1.21186 1.19329 1.21793 0.92350 1.03004 0.98094 1.22343 0.95748 0.97078 0.92903 0.90898 0.92109 0.92132 0.93199 0.93205 0.94118 0.90148 0.90094 0.90534 0.94824 0.84483 0.99916 0.96001 0.92632 0.89899 0.90761 0.90135 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.16 0.38 -0.82 16 2 C 0.07 0.72 7.16 37.16 0.27 0.99 16 3 O -0.27 -3.68 10.60 -13.92 -0.15 -3.83 16 4 N -0.36 -4.98 4.99 -113.82 -0.57 -5.55 16 5 C 0.04 0.61 5.99 -3.83 -0.02 0.58 16 6 C -0.10 -1.56 5.59 -26.65 -0.15 -1.71 16 7 C 0.08 1.31 2.56 -67.58 -0.17 1.14 16 8 N -0.67 -13.70 6.30 -107.85 -0.68 -14.38 16 9 C 0.16 3.97 4.31 -4.98 -0.02 3.95 16 10 C -0.52 -14.76 9.87 -34.44 -0.34 -15.10 16 11 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 14 Si 0.88 21.63 27.47 -169.99 -4.67 16.96 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 18 C -0.11 -1.55 5.36 -26.65 -0.14 -1.69 16 19 C 0.05 0.62 5.99 -3.84 -0.02 0.60 16 20 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.08 1.25 7.54 -51.93 -0.39 0.86 16 29 H 0.03 0.59 7.80 -51.93 -0.41 0.19 16 30 H 0.34 6.59 8.35 -39.29 -0.33 6.26 16 31 H -0.02 -0.41 7.11 -51.93 -0.37 -0.78 16 32 H 0.02 0.54 6.94 -51.93 -0.36 0.18 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -30.83 298.47 -7.63 -38.46 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.52 Total: 0.95 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -0.32 Total: -10.17 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.47 Total: -46.87 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.15 Total: -3.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.83 -7.63 -38.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323079972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.434 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds