Wall clock time and date at job start Mon Mar 30 2020 02:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 N 1.46295 * 113.99729 * 179.97438 * 3 2 1 5 5 C 1.46848 * 111.00247 * 244.21171 * 4 3 2 6 6 C 1.53036 * 109.52204 * 174.16193 * 5 4 3 7 7 C 1.53123 * 109.27916 * 59.18006 * 6 5 4 8 8 N 1.46905 * 109.52085 * 182.43778 * 7 6 5 9 9 C 1.46897 * 111.00103 * 274.68259 * 8 7 6 10 10 C 1.50698 * 109.47228 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00074 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00144 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00007 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46777 * 89.99937 * 14 12 10 16 16 H 1.48500 * 109.46981 * 209.99473 * 14 12 10 17 17 H 1.48490 * 109.47056 * 329.99900 * 14 12 10 18 18 C 1.53119 * 109.15905 * 302.34475 * 7 6 5 19 19 C 1.46847 * 110.99782 * 120.00048 * 4 3 2 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 23 23 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 24 24 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 25 25 H 1.08996 * 109.46444 * 294.17849 * 5 4 3 26 26 H 1.08999 * 109.45728 * 54.14893 * 5 4 3 27 27 H 1.09002 * 109.50971 * 299.23806 * 6 5 4 28 28 H 1.09001 * 109.53706 * 179.14296 * 6 5 4 29 29 H 1.09002 * 109.57149 * 62.28124 * 7 6 5 30 30 H 1.00900 * 110.99200 * 150.73179 * 8 7 6 31 31 H 1.09004 * 109.46944 * 300.00541 * 9 8 7 32 32 H 1.09005 * 109.46952 * 60.00139 * 9 8 7 33 33 H 0.96999 * 120.00396 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.50277 * 297.70657 * 18 7 6 35 35 H 1.09006 * 109.53338 * 177.61636 * 18 7 6 36 36 H 1.09005 * 109.46597 * 305.86006 * 19 4 3 37 37 H 1.09002 * 109.46170 * 65.83595 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 7 3.4647 1.4629 0.0006 5 6 3.9418 2.0992 1.2351 6 6 5.4715 2.0718 1.2664 7 6 6.0156 2.8156 0.0435 8 7 7.4829 2.7425 0.0372 9 6 8.0667 3.8111 0.8588 10 6 9.5696 3.7044 0.8276 11 1 10.0436 2.9208 0.2551 12 6 10.3395 4.6071 1.5300 13 7 11.6511 4.5137 1.5032 14 14 9.5197 5.9620 2.5208 15 1 9.2666 5.4806 3.9026 16 1 10.4095 7.1500 2.5657 17 1 8.2315 6.3322 1.8818 18 6 5.4652 2.1629 -1.2276 19 6 3.9356 2.1876 -1.1866 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.5963 3.1324 1.2681 26 1 3.5511 1.5581 2.0969 27 1 5.8176 1.0383 1.2474 28 1 5.8263 2.5576 2.1754 29 1 5.7031 3.8591 0.0819 30 1 7.8423 2.7735 -0.9051 31 1 7.7633 4.7804 0.4632 32 1 7.7163 3.7121 1.8862 33 1 12.1928 5.1486 1.9977 34 1 5.8111 1.1309 -1.2858 35 1 5.8149 2.7137 -2.1008 36 1 3.5405 1.7109 -2.0837 37 1 3.5903 3.2206 -1.1422 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323079972.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:47 Heat of formation + Delta-G solvation = -29.157044 kcal Electronic energy + Delta-G solvation = -16096.940999 eV Core-core repulsion = 13488.681537 eV Total energy + Delta-G solvation = -2608.259462 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.99387 -37.77823 -36.01729 -34.43864 -32.23839 -31.96744 -30.50890 -28.16202 -24.40473 -24.02612 -23.32999 -22.58181 -20.77180 -18.99107 -18.36342 -16.85979 -16.57935 -16.29117 -16.09524 -15.56027 -15.45170 -14.86215 -14.76120 -14.49416 -14.13594 -13.64926 -13.56068 -13.30694 -12.94209 -12.75351 -12.66315 -12.40382 -12.24153 -12.10629 -11.95336 -11.69042 -11.40300 -11.31261 -10.81719 -10.78572 -9.77028 -9.17496 -8.31025 -6.35415 1.34091 1.35060 1.45925 1.48874 2.32699 3.02991 3.34288 3.61056 3.76375 4.08869 4.11995 4.23970 4.24589 4.29639 4.41358 4.47284 4.57374 4.66887 4.67932 4.74600 4.79941 4.83446 4.94727 5.04021 5.07218 5.13581 5.19765 5.27165 5.32929 5.53809 5.71723 5.96363 6.08680 6.55425 6.65411 6.76570 7.29719 8.85717 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.059023 B = 0.004809 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.280377 B = 5821.432110 C = 6037.088603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.061 3.939 3 O -0.282 6.282 4 N -0.368 5.368 5 C 0.051 3.949 6 C -0.096 4.096 7 C 0.077 3.923 8 N -0.681 5.681 9 C 0.176 3.824 10 C -0.528 4.528 11 H 0.039 0.961 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.950 3.050 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.253 1.253 18 C -0.104 4.104 19 C 0.051 3.949 20 H 0.094 0.906 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.038 0.962 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.340 0.660 31 H -0.016 1.016 32 H 0.024 0.976 33 H 0.268 0.732 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.961 -5.922 -3.358 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 O -0.287 6.287 4 N -0.136 5.136 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.033 4.033 8 N -0.312 5.312 9 C 0.048 3.952 10 C -0.566 4.566 11 H 0.057 0.943 12 C -0.189 4.189 13 N -0.587 5.587 14 Si 0.773 3.227 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.177 1.177 18 C -0.142 4.142 19 C -0.077 4.077 20 H 0.113 0.887 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.109 0.891 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.158 0.842 31 H 0.002 0.998 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -21.731 -6.617 -2.814 22.890 hybrid contribution 0.065 2.054 0.006 2.055 sum -21.666 -4.564 -2.808 22.319 Atomic orbital electron populations 1.21776 0.92021 1.03711 1.02661 1.22488 0.95053 0.83284 1.00774 1.90644 1.12767 1.28314 1.97005 1.67516 0.91786 1.50838 1.03508 1.22334 0.94930 0.97955 0.92539 1.21510 0.92071 1.01835 0.98021 1.21695 0.88119 0.97156 0.96302 1.60385 1.04511 1.49502 1.16826 1.19773 0.93159 0.88514 0.93776 1.21348 0.91226 1.13705 1.30316 0.94275 1.25868 0.95235 1.00279 0.97540 1.70049 1.05905 1.38754 1.44037 0.85680 0.79078 0.78456 0.79503 1.18990 1.20575 1.17658 1.21702 0.92929 1.02702 0.96912 1.22329 0.94897 0.97160 0.93325 0.88700 0.92306 0.92115 0.93213 0.92886 0.94315 0.89145 0.90730 0.91556 0.95242 0.84203 0.99809 0.95836 0.92326 0.90043 0.89401 0.88507 0.94176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.06 1.17 7.16 71.98 0.52 1.68 16 3 O -0.28 -7.10 10.60 -50.15 -0.53 -7.63 16 4 N -0.37 -9.46 4.99 -514.01 -2.57 -12.03 16 5 C 0.05 1.33 5.99 86.33 0.52 1.85 16 6 C -0.10 -2.87 5.59 30.65 0.17 -2.69 16 7 C 0.08 2.47 2.56 45.00 0.12 2.58 16 8 N -0.68 -27.40 6.30 -495.14 -3.12 -30.52 16 9 C 0.18 8.44 4.31 85.56 0.37 8.80 16 10 C -0.53 -30.72 9.87 25.60 0.25 -30.47 16 11 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 12 C 0.01 0.49 5.47 84.65 0.46 0.95 16 13 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 14 Si 0.95 44.24 27.47 68.60 1.88 46.13 16 15 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 18 C -0.10 -2.63 5.36 30.65 0.16 -2.47 16 19 C 0.05 1.21 5.99 86.32 0.52 1.73 16 20 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 2.11 7.54 -2.39 -0.02 2.09 16 29 H 0.03 0.98 7.80 -2.39 -0.02 0.97 16 30 H 0.34 13.23 8.35 -89.69 -0.75 12.48 16 31 H -0.02 -0.75 7.11 -2.39 -0.02 -0.76 16 32 H 0.02 1.12 6.94 -2.38 -0.02 1.11 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -66.00 298.47 0.01 -65.99 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.22 Total: 16.46 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.82 Total: -19.26 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -5.39 Total: -101.68 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.53 Total: -7.63 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.13 kcal Total: -66.00 0.01 -65.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323079972.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.836 kcal (2) G-P(sol) polarization free energy of solvation -66.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds