Wall clock time and date at job start Mon Mar 30 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.53004 * 113.72816 * 221.75967 * 4 3 2 6 6 N 1.46902 * 109.46879 * 184.99987 * 5 4 3 7 7 C 1.46904 * 111.00103 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47204 * 65.00186 * 8 7 6 10 10 C 1.42904 * 114.00139 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46805 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99742 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47447 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46752 * 120.00009 * 15 13 11 18 18 H 1.48501 * 109.47206 * 239.99945 * 15 13 11 19 19 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 20 20 H 1.09002 * 109.46754 * 60.00304 * 1 2 3 21 21 H 1.08996 * 109.46882 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47353 * 300.00377 * 1 2 3 23 23 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 24 24 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 25 25 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 26 26 H 1.08997 * 109.47251 * 304.99531 * 5 4 3 27 27 H 1.08998 * 109.47603 * 65.00165 * 5 4 3 28 28 H 1.00907 * 111.00393 * 56.04736 * 6 5 4 29 29 H 1.08993 * 109.47361 * 300.00174 * 7 6 5 30 30 H 1.09004 * 109.46939 * 60.00286 * 7 6 5 31 31 H 1.09005 * 109.47344 * 185.00109 * 8 7 6 32 32 H 1.09003 * 109.47611 * 305.00485 * 8 7 6 33 33 H 1.09001 * 109.47074 * 299.99974 * 10 9 8 34 34 H 1.08994 * 109.47377 * 60.00396 * 10 9 8 35 35 H 0.97005 * 119.99502 * 180.02562 * 14 13 11 36 36 H 1.09003 * 113.75437 * 108.13284 * 19 2 1 37 37 H 1.08998 * 113.85723 * 336.78984 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 3.2662 1.8629 2.1838 6 7 4.3393 1.3507 3.0465 7 6 4.6011 2.2691 4.1627 8 6 5.7215 1.7027 5.0372 9 8 6.9372 1.6630 4.2872 10 6 8.0532 1.1476 5.0160 11 6 9.2747 1.1520 4.1335 12 1 9.2057 1.5120 3.1176 13 6 10.4803 0.6955 4.6227 14 7 10.5642 0.2567 5.8597 15 14 11.9943 0.7003 3.5286 16 1 11.6373 1.2395 2.1918 17 1 13.0449 1.5526 4.1411 18 1 12.5045 -0.6867 3.3834 19 6 2.0031 -0.2223 1.3656 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.3010 2.1198 0.3940 24 1 2.4444 1.6809 -0.9489 25 1 3.9470 0.5079 0.5933 26 1 3.5573 2.8320 1.7786 27 1 2.3522 1.9727 2.7674 28 1 5.1798 1.1791 2.5151 29 1 4.9015 3.2408 3.7709 30 1 3.6963 2.3821 4.7601 31 1 5.8553 2.3379 5.9129 32 1 5.4586 0.6942 5.3566 33 1 8.2353 1.7717 5.8910 34 1 7.8389 0.1278 5.3353 35 1 11.4125 -0.0641 6.2040 36 1 2.4509 -1.2060 1.5072 37 1 1.3071 0.0463 2.1603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379456843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:49 Heat of formation + Delta-G solvation = -19.954551 kcal Electronic energy + Delta-G solvation = -15519.742815 eV Core-core repulsion = 12911.882403 eV Total energy + Delta-G solvation = -2607.860412 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.04953 -37.17014 -35.30967 -32.72480 -31.34496 -28.84054 -26.90522 -26.23582 -25.20326 -22.35783 -22.06588 -21.39045 -19.68775 -16.47594 -16.11884 -16.00345 -15.56700 -15.29874 -15.14832 -14.46469 -14.27178 -13.88132 -13.46840 -13.17600 -12.86507 -12.43273 -12.15332 -11.69306 -11.60445 -11.38293 -11.17820 -10.87157 -10.78704 -10.75870 -10.60922 -10.44427 -10.00131 -9.08914 -9.00614 -8.82505 -8.20654 -8.16710 -6.10591 -4.12284 3.29589 3.36032 3.42283 3.78812 4.10243 4.35506 4.48859 4.80430 4.90617 4.94620 5.10132 5.23723 5.26025 5.26775 5.35410 5.40592 5.50242 5.57795 5.60465 5.68597 5.73601 5.79783 6.06813 6.10696 6.17246 6.24598 6.35039 6.85118 7.11748 7.21091 7.44477 7.64506 7.79674 8.15752 8.58035 9.01165 9.52649 11.00992 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.004093 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.461114 B = 6839.301932 C = 7261.065308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.489 5.489 3 C 0.004 3.996 4 C -0.110 4.110 5 C 0.067 3.933 6 N -0.686 5.686 7 C 0.066 3.934 8 C 0.062 3.938 9 O -0.400 6.400 10 C 0.197 3.803 11 C -0.514 4.514 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.015 3.985 20 H 0.065 0.935 21 H 0.069 0.931 22 H 0.033 0.967 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.103 0.897 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.357 0.643 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.004 0.996 34 H 0.006 0.994 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.039 2.490 -7.573 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 N -0.212 5.212 3 C -0.126 4.126 4 C -0.129 4.129 5 C -0.063 4.063 6 N -0.319 5.319 7 C -0.064 4.064 8 C -0.016 4.016 9 O -0.320 6.320 10 C 0.123 3.877 11 C -0.552 4.552 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.114 4.114 20 H 0.084 0.916 21 H 0.088 0.912 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.176 0.824 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.169 1.615 -7.805 19.840 hybrid contribution 0.865 1.117 0.117 1.418 sum -17.303 2.732 -7.688 19.131 Atomic orbital electron populations 1.22844 0.89997 1.02297 1.00799 1.68574 1.08774 1.18485 1.25320 1.23989 0.97048 0.91451 1.00102 1.22963 0.98685 0.96065 0.95201 1.21954 0.95820 0.95424 0.93124 1.60477 1.12212 1.46516 1.12688 1.21943 0.97128 0.94066 0.93214 1.22294 0.86204 0.99412 0.93693 1.87785 1.17462 1.85852 1.40861 1.20180 0.82630 0.92826 0.92103 1.21096 0.92480 1.42226 0.99439 0.91559 1.24959 0.99089 0.95141 0.95375 1.69978 1.26118 1.42785 1.14871 0.86286 0.81991 0.77736 0.80500 1.19497 1.20885 1.20804 1.24048 0.96519 1.00777 0.90033 0.91597 0.91244 0.94845 0.91393 0.89421 0.87924 0.95125 0.91518 0.82375 0.94822 0.90855 0.94195 0.93539 0.97843 0.97591 0.92711 0.89135 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 2 N -0.49 -5.25 6.57 -245.54 -1.61 -6.86 16 3 C 0.00 0.03 7.54 -2.77 -0.02 0.01 16 4 C -0.11 -1.20 4.08 -89.68 -0.37 -1.57 16 5 C 0.07 0.77 5.54 -3.82 -0.02 0.75 16 6 N -0.69 -10.04 6.50 -113.78 -0.74 -10.78 16 7 C 0.07 0.99 6.10 -3.83 -0.02 0.96 16 8 C 0.06 1.16 6.28 37.15 0.23 1.39 16 9 O -0.40 -9.56 9.85 -35.23 -0.35 -9.90 16 10 C 0.20 5.43 5.69 36.01 0.20 5.64 16 11 C -0.51 -15.19 9.43 -34.44 -0.32 -15.51 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.91 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.01 0.16 7.54 -2.58 -0.02 0.14 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.03 0.26 7.63 -51.93 -0.40 -0.13 16 23 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 24 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.10 1.23 8.13 -51.93 -0.42 0.81 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 28 H 0.36 5.84 8.28 -39.29 -0.33 5.51 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.70 7.39 -51.93 -0.38 0.32 16 LS Contribution 307.23 15.07 4.63 4.63 Total: -1.00 -30.85 307.23 -8.75 -39.60 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.54 Total: -1.08 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 0.15 Total: -6.18 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -1.62 Total: -43.94 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.35 Total: -9.90 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.85 -8.75 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379456843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.642 kcal (2) G-P(sol) polarization free energy of solvation -30.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds