Wall clock time and date at job start Mon Mar 30 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47962 * 111.00056 * 2 1 4 4 C 1.53935 * 86.30001 * 137.63674 * 3 2 1 5 5 C 1.53004 * 113.72816 * 221.75967 * 4 3 2 6 6 N 1.46902 * 109.46879 * 184.99987 * 5 4 3 7 7 C 1.46904 * 111.00103 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.47204 * 65.00186 * 8 7 6 10 10 C 1.42904 * 114.00139 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46805 * 180.02562 * 10 9 8 12 12 H 1.08000 * 120.00388 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99800 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99742 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99850 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47447 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46752 * 120.00009 * 15 13 11 18 18 H 1.48501 * 109.47206 * 239.99945 * 15 13 11 19 19 C 1.48308 * 111.10591 * 99.24764 * 2 1 3 20 20 H 1.09002 * 109.46754 * 60.00304 * 1 2 3 21 21 H 1.08996 * 109.46882 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47353 * 300.00377 * 1 2 3 23 23 H 1.09002 * 113.76087 * 23.26139 * 3 2 1 24 24 H 1.09005 * 113.75858 * 252.00601 * 3 2 1 25 25 H 1.09000 * 113.73561 * 90.58655 * 4 3 2 26 26 H 1.08997 * 109.47251 * 304.99531 * 5 4 3 27 27 H 1.08998 * 109.47603 * 65.00165 * 5 4 3 28 28 H 1.00907 * 111.00393 * 56.04736 * 6 5 4 29 29 H 1.08993 * 109.47361 * 300.00174 * 7 6 5 30 30 H 1.09004 * 109.46939 * 60.00286 * 7 6 5 31 31 H 1.09005 * 109.47344 * 185.00109 * 8 7 6 32 32 H 1.09003 * 109.47611 * 305.00485 * 8 7 6 33 33 H 1.09001 * 109.47074 * 299.99974 * 10 9 8 34 34 H 1.08994 * 109.47377 * 60.00396 * 10 9 8 35 35 H 0.97005 * 119.99502 * 180.02562 * 14 13 11 36 36 H 1.09003 * 113.75437 * 108.13284 * 19 2 1 37 37 H 1.08998 * 113.85723 * 336.78984 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0233 0.8818 1.0351 5 6 3.2662 1.8629 2.1838 6 7 4.3393 1.3507 3.0465 7 6 4.6011 2.2691 4.1627 8 6 5.7215 1.7027 5.0372 9 8 6.9372 1.6630 4.2872 10 6 8.0532 1.1476 5.0160 11 6 9.2747 1.1520 4.1335 12 1 9.2057 1.5120 3.1176 13 6 10.4803 0.6955 4.6227 14 7 10.5642 0.2567 5.8597 15 14 11.9943 0.7003 3.5286 16 1 11.6373 1.2395 2.1918 17 1 13.0449 1.5526 4.1411 18 1 12.5045 -0.6867 3.3834 19 6 2.0031 -0.2223 1.3656 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.3010 2.1198 0.3940 24 1 2.4444 1.6809 -0.9489 25 1 3.9470 0.5079 0.5933 26 1 3.5573 2.8320 1.7786 27 1 2.3522 1.9727 2.7674 28 1 5.1798 1.1791 2.5151 29 1 4.9015 3.2408 3.7709 30 1 3.6963 2.3821 4.7601 31 1 5.8553 2.3379 5.9129 32 1 5.4586 0.6942 5.3566 33 1 8.2353 1.7717 5.8910 34 1 7.8389 0.1278 5.3353 35 1 11.4125 -0.0641 6.2040 36 1 2.4509 -1.2060 1.5072 37 1 1.3071 0.0463 2.1603 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379456843.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:49 Heat of formation + Delta-G solvation = -44.216469 kcal Electronic energy + Delta-G solvation = -15520.794891 eV Core-core repulsion = 12911.882403 eV Total energy + Delta-G solvation = -2608.912488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.86474 -38.84865 -36.64416 -34.87861 -32.38187 -30.22750 -28.78708 -27.02928 -26.26535 -24.52094 -22.97192 -22.70309 -20.54471 -18.64260 -17.56628 -17.08680 -16.78086 -16.60953 -16.45175 -16.03940 -15.45668 -15.20343 -14.95288 -14.33900 -13.96448 -13.62092 -13.35189 -13.15760 -13.13879 -12.74561 -12.63770 -12.39514 -12.28530 -12.12136 -11.84555 -11.51864 -11.45245 -11.25806 -10.87689 -10.23337 -9.77710 -9.32908 -8.32378 -6.44772 1.40535 1.42007 1.56625 2.34889 3.01616 3.01646 3.09797 3.22821 3.64015 3.87007 4.18029 4.20548 4.34809 4.37753 4.45650 4.47510 4.55668 4.58810 4.66361 4.71748 4.79208 4.84786 4.86011 4.93371 4.97457 4.98468 5.18241 5.33788 5.37191 5.54959 5.95610 6.10848 6.11444 6.39385 6.53219 6.81720 7.27299 8.80251 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.038011 B = 0.004093 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.461114 B = 6839.301932 C = 7261.065308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.510 5.510 3 C 0.012 3.988 4 C -0.112 4.112 5 C 0.072 3.928 6 N -0.697 5.697 7 C 0.076 3.924 8 C 0.053 3.947 9 O -0.409 6.409 10 C 0.211 3.789 11 C -0.547 4.547 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.931 5.931 15 Si 0.984 3.016 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.272 1.272 19 C 0.016 3.984 20 H 0.074 0.926 21 H 0.070 0.930 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.082 0.918 28 H 0.343 0.657 29 H 0.033 0.967 30 H 0.105 0.895 31 H 0.048 0.952 32 H 0.042 0.958 33 H -0.015 1.015 34 H -0.016 1.016 35 H 0.271 0.729 36 H 0.077 0.923 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.616 3.156 -8.489 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 N -0.233 5.233 3 C -0.117 4.117 4 C -0.131 4.131 5 C -0.057 4.057 6 N -0.328 5.328 7 C -0.054 4.054 8 C -0.024 4.024 9 O -0.329 6.329 10 C 0.136 3.864 11 C -0.585 4.585 12 H 0.081 0.919 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.113 4.113 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.161 0.839 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.003 0.997 34 H 0.002 0.998 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.786 2.289 -8.716 20.836 hybrid contribution 0.945 0.899 0.438 1.376 sum -17.841 3.187 -8.278 19.925 Atomic orbital electron populations 1.22880 0.88684 1.02707 1.01679 1.68549 1.10268 1.19285 1.25157 1.23988 0.96586 0.91360 0.99764 1.22900 0.98387 0.96300 0.95510 1.21988 0.95172 0.95546 0.92988 1.60524 1.12230 1.46931 1.13138 1.21906 0.96670 0.93565 0.93220 1.22623 0.85227 0.99810 0.94741 1.87749 1.18278 1.85457 1.41414 1.19795 0.83828 0.91281 0.91504 1.21427 0.93887 1.43495 0.99678 0.91913 1.25985 1.02470 0.93977 0.96924 1.70083 1.27473 1.42866 1.16629 0.85117 0.77355 0.78318 0.78488 1.18752 1.19679 1.19698 1.24024 0.96637 1.00012 0.90602 0.90684 0.91158 0.93933 0.89728 0.89163 0.89636 0.94660 0.89993 0.83913 0.94832 0.87728 0.93358 0.93930 0.99709 0.99781 0.92046 0.90450 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.65 127.69 1.23 1.07 16 2 N -0.51 -10.23 6.57 -930.75 -6.11 -16.34 16 3 C 0.01 0.21 7.54 86.41 0.65 0.86 16 4 C -0.11 -2.33 4.08 -10.15 -0.04 -2.37 16 5 C 0.07 1.54 5.54 86.30 0.48 2.02 16 6 N -0.70 -19.77 6.50 -513.89 -3.34 -23.11 16 7 C 0.08 2.16 6.10 86.30 0.53 2.68 16 8 C 0.05 1.98 6.28 71.98 0.45 2.43 16 9 O -0.41 -19.92 9.85 -148.98 -1.47 -21.39 16 10 C 0.21 12.01 5.69 71.24 0.41 12.41 16 11 C -0.55 -32.84 9.43 25.60 0.24 -32.60 16 12 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 13 C 0.00 0.28 5.46 84.66 0.46 0.74 16 14 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 15 Si 0.98 44.60 29.54 68.60 2.03 46.63 16 16 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 C 0.02 0.32 7.54 86.34 0.65 0.97 16 20 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 21 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.04 0.57 7.63 -2.39 -0.02 0.55 16 23 H 0.08 1.19 7.88 -2.39 -0.02 1.17 16 24 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.09 2.07 8.13 -2.39 -0.02 2.06 16 26 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 27 H 0.08 1.52 7.84 -2.39 -0.02 1.50 16 28 H 0.34 11.29 8.28 -89.69 -0.74 10.55 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 34 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 1.45 7.39 -2.39 -0.02 1.43 16 Total: -1.00 -65.88 307.23 -3.27 -69.15 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.28 Total: 12.99 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.06 Total: -11.77 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -9.17 Total: -95.61 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.47 Total: -21.39 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -65.88 -3.27 -69.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379456843.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.936 kcal (2) G-P(sol) polarization free energy of solvation -65.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds