Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00423 * 2 1 4 4 C 1.53008 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.46853 * 65.00174 * 4 3 2 6 6 C 1.48562 * 111.00142 * 54.57993 * 5 4 3 7 7 C 1.54377 * 104.59407 * 159.03785 * 6 5 4 8 8 C 1.54266 * 105.06190 * 336.14868 * 7 6 5 9 9 H 1.08996 * 110.32023 * 118.89709 * 8 7 6 10 10 N 1.46896 * 110.32587 * 241.00035 * 8 7 6 11 11 C 1.46904 * 111.00377 * 273.54994 * 10 8 7 12 12 C 1.50693 * 109.47189 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00530 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00000 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00723 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00009 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47171 * 89.99900 * 16 14 12 18 18 H 1.48498 * 109.47423 * 209.99975 * 16 14 12 19 19 H 1.48507 * 109.47038 * 330.00474 * 16 14 12 20 20 C 1.48562 * 110.99842 * 170.00157 * 5 4 3 21 21 H 1.08996 * 109.47753 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.46828 * 300.00245 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.99317 * 1 2 3 24 24 H 1.09007 * 109.47053 * 60.00124 * 3 2 1 25 25 H 1.08993 * 109.47314 * 300.00206 * 3 2 1 26 26 H 1.08998 * 109.47000 * 304.99999 * 4 3 2 27 27 H 1.08997 * 109.47172 * 185.00184 * 4 3 2 28 28 H 1.09000 * 110.41111 * 40.26361 * 6 5 4 29 29 H 1.08989 * 110.41482 * 277.81625 * 6 5 4 30 30 H 1.09005 * 110.32720 * 217.25400 * 7 6 5 31 31 H 1.09003 * 110.32570 * 95.04509 * 7 6 5 32 32 H 1.00899 * 111.00267 * 149.59087 * 10 8 7 33 33 H 1.08997 * 109.46488 * 300.00053 * 11 10 8 34 34 H 1.09005 * 109.47103 * 59.99348 * 11 10 8 35 35 H 0.97001 * 120.01161 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.41528 * 82.17831 * 20 5 4 37 37 H 1.08999 * 110.41058 * 319.73593 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.4550 1.3046 -2.4300 7 6 4.3929 0.9068 -3.5899 8 6 5.7082 0.4723 -2.9108 9 1 5.9272 -0.5701 -3.1419 10 7 6.8157 1.3339 -3.3455 11 6 7.4144 0.8340 -4.5904 12 6 8.5438 1.7416 -5.0045 13 1 8.7919 2.6039 -4.4034 14 6 9.2606 1.4712 -6.1509 15 7 10.2459 2.2635 -6.5127 16 14 8.8321 -0.0206 -7.1903 17 1 7.8215 0.3600 -8.2096 18 1 10.0555 -0.5195 -7.8683 19 1 8.2786 -1.0884 -6.3191 20 6 5.4543 0.6442 -1.3978 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6886 1.8463 0.8901 25 1 1.6887 1.8463 -0.8899 26 1 3.8508 0.5683 0.8427 27 1 3.9786 2.1763 0.0902 28 1 3.5035 2.3791 -2.2534 29 1 2.4313 1.0001 -2.6475 30 1 4.5689 1.7605 -4.2444 31 1 3.9664 0.0775 -4.1543 32 1 7.5112 1.4226 -2.6199 33 1 7.7977 -0.1737 -4.4299 34 1 6.6580 0.8143 -5.3750 35 1 10.7504 2.0731 -7.3190 36 1 5.9358 -0.1575 -0.8380 37 1 5.8156 1.6154 -1.0596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379601578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = -35.153227 kcal Electronic energy + Delta-G solvation = -16027.058774 eV Core-core repulsion = 13418.539298 eV Total energy + Delta-G solvation = -2608.519476 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20606 -37.68219 -35.01153 -32.62278 -31.25334 -28.98071 -28.15463 -26.38026 -25.34706 -23.06569 -21.35848 -20.65465 -19.51940 -16.84629 -16.73381 -16.33658 -15.85201 -15.33165 -14.84954 -14.63610 -13.96024 -13.72879 -13.48586 -12.92810 -12.61546 -12.40850 -12.28916 -11.83838 -11.59721 -11.33257 -11.18269 -11.03486 -10.96451 -10.64533 -10.34979 -10.25432 -9.83635 -9.75328 -9.26590 -8.58758 -8.36929 -7.49795 -6.05764 -4.03843 3.29832 3.36927 3.40147 3.62761 4.03122 4.42670 4.74790 4.85751 5.01276 5.08180 5.12595 5.16119 5.21341 5.27262 5.28035 5.40032 5.46734 5.51951 5.58684 5.76866 5.81068 5.90807 6.16448 6.22530 6.39497 6.50427 6.80185 6.93230 6.95807 7.03733 7.16321 7.62370 7.91256 8.33098 8.65096 9.01860 9.56316 11.07481 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061476 B = 0.004643 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.352241 B = 6029.603873 C = 6246.069618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.062 3.938 4 C 0.045 3.955 5 N -0.501 5.501 6 C 0.037 3.963 7 C -0.115 4.115 8 C 0.080 3.920 9 H 0.045 0.955 10 N -0.674 5.674 11 C 0.165 3.835 12 C -0.516 4.516 13 H 0.078 0.922 14 C 0.068 3.932 15 N -0.901 5.901 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.032 3.968 21 H 0.084 0.916 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.052 0.948 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.335 0.665 33 H -0.015 1.015 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 -3.134 12.411 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.015 4.015 4 C -0.084 4.084 5 N -0.226 5.226 6 C -0.091 4.091 7 C -0.154 4.154 8 C -0.031 4.031 9 H 0.063 0.937 10 N -0.305 5.305 11 C 0.037 3.963 12 C -0.555 4.555 13 H 0.096 0.904 14 C -0.133 4.133 15 N -0.540 5.540 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.096 4.096 21 H 0.102 0.898 22 H 0.055 0.945 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.101 0.899 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.003 0.997 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.634 -3.381 11.971 21.580 hybrid contribution 0.395 -0.390 -0.320 0.641 sum -17.239 -3.771 11.651 21.146 Atomic orbital electron populations 1.22723 0.81778 1.02597 0.99559 1.88017 1.18828 1.27227 1.95233 1.22624 0.93602 0.85220 1.00014 1.22310 0.93345 0.98320 0.94403 1.65435 1.06676 1.49348 1.01124 1.23086 0.99107 0.95897 0.91044 1.22375 0.94159 1.01783 0.97073 1.22210 0.93178 0.95474 0.92278 0.93672 1.60661 1.12552 1.49994 1.07340 1.20026 0.94404 0.93912 0.87991 1.21064 1.13439 1.11545 1.09407 0.90351 1.24906 0.94753 0.96394 0.97281 1.69896 1.21182 1.37905 1.25013 0.86822 0.78050 0.83783 0.80872 1.20129 1.21210 1.19204 1.23295 0.88547 1.00853 0.96941 0.89759 0.94518 0.94296 0.93213 0.93056 0.89855 0.93043 0.93963 0.90761 0.89853 0.91893 0.84699 0.99747 0.95951 0.92645 0.90480 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.37 -4.48 10.65 -35.23 -0.38 -4.85 16 3 C 0.06 0.64 5.81 37.16 0.22 0.86 16 4 C 0.04 0.51 5.44 -3.82 -0.02 0.49 16 5 N -0.50 -7.00 5.44 -229.98 -1.25 -8.25 16 6 C 0.04 0.50 5.10 -2.18 -0.01 0.49 16 7 C -0.12 -1.86 6.70 -25.35 -0.17 -2.03 16 8 C 0.08 1.39 3.37 -66.33 -0.22 1.17 16 9 H 0.05 0.83 7.86 -51.93 -0.41 0.43 16 10 N -0.67 -13.98 6.17 -106.53 -0.66 -14.64 16 11 C 0.16 4.04 4.35 -4.98 -0.02 4.02 16 12 C -0.52 -14.88 9.87 -34.44 -0.34 -15.22 16 13 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 16 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 C 0.03 0.47 5.95 -2.18 -0.01 0.46 16 21 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.55 7.88 -51.93 -0.41 0.14 16 28 H 0.04 0.56 8.00 -51.93 -0.42 0.15 16 29 H 0.07 0.96 7.56 -51.93 -0.39 0.56 16 30 H 0.08 1.46 7.95 -51.93 -0.41 1.05 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.34 6.70 8.40 -39.29 -0.33 6.37 16 33 H -0.02 -0.38 7.13 -51.93 -0.37 -0.75 16 34 H 0.02 0.56 7.54 -51.93 -0.39 0.17 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.78 7.69 -51.93 -0.40 0.38 16 LS Contribution 297.43 15.07 4.48 4.48 Total: -1.00 -31.48 297.43 -7.68 -39.17 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.42 Total: 0.54 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 0.43 Total: -6.50 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -1.13 Total: -49.99 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.38 Total: -4.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.48 -7.68 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379601578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.014 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds