Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 114.00423 * 2 1 4 4 C 1.53008 * 109.47193 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.46853 * 65.00174 * 4 3 2 6 6 C 1.48562 * 111.00142 * 54.57993 * 5 4 3 7 7 C 1.54377 * 104.59407 * 159.03785 * 6 5 4 8 8 C 1.54266 * 105.06190 * 336.14868 * 7 6 5 9 9 H 1.08996 * 110.32023 * 118.89709 * 8 7 6 10 10 N 1.46896 * 110.32587 * 241.00035 * 8 7 6 11 11 C 1.46904 * 111.00377 * 273.54994 * 10 8 7 12 12 C 1.50693 * 109.47189 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00530 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00000 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00723 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 120.00009 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47171 * 89.99900 * 16 14 12 18 18 H 1.48498 * 109.47423 * 209.99975 * 16 14 12 19 19 H 1.48507 * 109.47038 * 330.00474 * 16 14 12 20 20 C 1.48562 * 110.99842 * 170.00157 * 5 4 3 21 21 H 1.08996 * 109.47753 * 180.02562 * 1 2 3 22 22 H 1.09010 * 109.46828 * 300.00245 * 1 2 3 23 23 H 1.09003 * 109.47316 * 59.99317 * 1 2 3 24 24 H 1.09007 * 109.47053 * 60.00124 * 3 2 1 25 25 H 1.08993 * 109.47314 * 300.00206 * 3 2 1 26 26 H 1.08998 * 109.47000 * 304.99999 * 4 3 2 27 27 H 1.08997 * 109.47172 * 185.00184 * 4 3 2 28 28 H 1.09000 * 110.41111 * 40.26361 * 6 5 4 29 29 H 1.08989 * 110.41482 * 277.81625 * 6 5 4 30 30 H 1.09005 * 110.32720 * 217.25400 * 7 6 5 31 31 H 1.09003 * 110.32570 * 95.04509 * 7 6 5 32 32 H 1.00899 * 111.00267 * 149.59087 * 10 8 7 33 33 H 1.08997 * 109.46488 * 300.00053 * 11 10 8 34 34 H 1.09005 * 109.47103 * 59.99348 * 11 10 8 35 35 H 0.97001 * 120.01161 * 179.97438 * 15 14 12 36 36 H 1.08998 * 110.41528 * 82.17831 * 20 5 4 37 37 H 1.08999 * 110.41058 * 319.73593 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2543 6 6 3.4550 1.3046 -2.4300 7 6 4.3929 0.9068 -3.5899 8 6 5.7082 0.4723 -2.9108 9 1 5.9272 -0.5701 -3.1419 10 7 6.8157 1.3339 -3.3455 11 6 7.4144 0.8340 -4.5904 12 6 8.5438 1.7416 -5.0045 13 1 8.7919 2.6039 -4.4034 14 6 9.2606 1.4712 -6.1509 15 7 10.2459 2.2635 -6.5127 16 14 8.8321 -0.0206 -7.1903 17 1 7.8215 0.3600 -8.2096 18 1 10.0555 -0.5195 -7.8683 19 1 8.2786 -1.0884 -6.3191 20 6 5.4543 0.6442 -1.3978 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.6886 1.8463 0.8901 25 1 1.6887 1.8463 -0.8899 26 1 3.8508 0.5683 0.8427 27 1 3.9786 2.1763 0.0902 28 1 3.5035 2.3791 -2.2534 29 1 2.4313 1.0001 -2.6475 30 1 4.5689 1.7605 -4.2444 31 1 3.9664 0.0775 -4.1543 32 1 7.5112 1.4226 -2.6199 33 1 7.7977 -0.1737 -4.4299 34 1 6.6580 0.8143 -5.3750 35 1 10.7504 2.0731 -7.3190 36 1 5.9358 -0.1575 -0.8380 37 1 5.8156 1.6154 -1.0596 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379601578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = -60.339757 kcal Electronic energy + Delta-G solvation = -16028.150943 eV Core-core repulsion = 13418.539298 eV Total energy + Delta-G solvation = -2609.611646 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32440 -38.58345 -36.57198 -34.59717 -32.63691 -30.18886 -29.59758 -27.44353 -26.62955 -24.09579 -23.26343 -21.81466 -20.83422 -18.94706 -17.59216 -17.31365 -17.06104 -16.71106 -16.12026 -15.74941 -15.50319 -15.09401 -14.81556 -14.49320 -14.23436 -13.65640 -13.42182 -13.26485 -12.81567 -12.68853 -12.36995 -12.32014 -12.27270 -11.98321 -11.83763 -11.77773 -11.56008 -11.42130 -10.82087 -10.52866 -9.42584 -9.19572 -8.31475 -6.36046 1.34640 1.35619 1.46984 2.32959 2.85894 3.00066 3.02902 3.60147 3.64346 3.81466 4.14249 4.20076 4.26132 4.34908 4.47190 4.52540 4.57921 4.61096 4.65452 4.68929 4.80017 4.88836 4.90917 4.95764 4.96902 5.08580 5.15248 5.19961 5.52500 5.75316 5.99575 6.04113 6.35963 6.53634 6.64776 6.75378 7.29202 8.85158 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.061476 B = 0.004643 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.352241 B = 6029.603873 C = 6246.069618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.063 3.937 4 C 0.042 3.958 5 N -0.511 5.511 6 C 0.046 3.954 7 C -0.116 4.116 8 C 0.075 3.925 9 H 0.038 0.962 10 N -0.678 5.678 11 C 0.177 3.823 12 C -0.528 4.528 13 H 0.039 0.961 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.253 1.253 20 C 0.041 3.959 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.337 0.663 33 H -0.015 1.015 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.085 0.915 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.132 -4.276 12.922 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.014 4.014 4 C -0.086 4.086 5 N -0.235 5.235 6 C -0.082 4.082 7 C -0.155 4.155 8 C -0.035 4.035 9 H 0.056 0.944 10 N -0.310 5.310 11 C 0.048 3.952 12 C -0.566 4.566 13 H 0.057 0.943 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.177 1.177 20 C -0.087 4.087 21 H 0.109 0.891 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.003 0.997 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.508 -4.518 12.510 23.610 hybrid contribution 0.958 0.038 -0.402 1.040 sum -18.549 -4.480 12.108 22.600 Atomic orbital electron populations 1.22877 0.80182 1.03438 1.00567 1.87966 1.20702 1.28188 1.95470 1.22662 0.92575 0.84971 1.01175 1.22401 0.94460 0.98659 0.93051 1.65449 1.05789 1.50090 1.02199 1.23008 0.98980 0.96153 0.90039 1.22356 0.94097 1.01262 0.97776 1.22304 0.92331 0.94339 0.94545 0.94430 1.60569 1.13093 1.50913 1.06401 1.19750 0.92966 0.92755 0.89685 1.21329 1.14973 1.11115 1.09223 0.94315 1.25860 0.94445 0.99816 0.98730 1.70042 1.22551 1.40178 1.25930 0.85675 0.78211 0.79723 0.79078 1.18997 1.20479 1.17705 1.23175 0.89553 1.01252 0.94753 0.89123 0.93023 0.93726 0.91056 0.92840 0.89659 0.92060 0.93495 0.89572 0.91594 0.91362 0.84475 0.99730 0.95906 0.92292 0.89662 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.40 -8.75 10.65 -148.98 -1.59 -10.33 16 3 C 0.06 1.12 5.81 71.98 0.42 1.54 16 4 C 0.04 0.87 5.44 86.31 0.47 1.34 16 5 N -0.51 -13.19 5.44 -881.51 -4.79 -17.98 16 6 C 0.05 1.17 5.10 86.45 0.44 1.61 16 7 C -0.12 -3.61 6.70 31.49 0.21 -3.39 16 8 C 0.08 2.55 3.37 45.81 0.15 2.71 16 9 H 0.04 1.34 7.86 -2.39 -0.02 1.32 16 10 N -0.68 -28.01 6.17 -490.95 -3.03 -31.04 16 11 C 0.18 8.64 4.35 85.55 0.37 9.01 16 12 C -0.53 -31.03 9.87 25.60 0.25 -30.78 16 13 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 14 C 0.01 0.54 5.47 84.66 0.46 1.00 16 15 N -0.95 -59.63 13.96 21.45 0.30 -59.33 16 16 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 20 C 0.04 1.14 5.95 86.45 0.51 1.65 16 21 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.92 6.57 -2.39 -0.02 0.91 16 26 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.06 1.14 7.88 -2.39 -0.02 1.12 16 28 H 0.05 1.15 8.00 -2.39 -0.02 1.14 16 29 H 0.09 2.01 7.56 -2.39 -0.02 1.99 16 30 H 0.07 2.27 7.95 -2.38 -0.02 2.25 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.34 13.54 8.40 -89.69 -0.75 12.79 16 33 H -0.01 -0.72 7.13 -2.39 -0.02 -0.74 16 34 H 0.02 1.12 7.54 -2.38 -0.02 1.10 16 35 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 36 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 Total: -1.00 -67.38 297.43 -2.46 -69.85 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.22 Total: 15.94 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: 4.54 Total: -13.69 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -7.52 Total: -108.35 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.59 Total: -10.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -67.38 -2.46 -69.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379601578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.508 kcal (2) G-P(sol) polarization free energy of solvation -67.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds