Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47070 * 2 1 4 4 C 1.46904 * 111.00062 * 72.02512 * 3 2 1 5 5 C 1.52999 * 109.47196 * 199.30355 * 4 3 2 6 6 O 1.42899 * 109.47068 * 65.02087 * 5 4 3 7 7 C 1.42906 * 113.99761 * 184.79070 * 6 5 4 8 8 C 1.50694 * 109.46731 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00365 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99779 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00031 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47122 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47164 * 119.99647 * 12 10 8 15 15 H 1.48496 * 109.47079 * 239.99779 * 12 10 8 16 16 C 1.46901 * 111.00109 * 195.97556 * 3 2 1 17 17 C 1.53518 * 114.16635 * 66.04865 * 16 3 2 18 18 N 1.47480 * 87.92911 * 220.32920 * 17 16 3 19 19 C 1.47472 * 87.83978 * 27.01122 * 18 17 16 20 20 H 1.08999 * 109.47292 * 301.20326 * 1 2 3 21 21 H 1.08993 * 109.47057 * 61.20727 * 1 2 3 22 22 H 1.09004 * 109.46890 * 181.20905 * 1 2 3 23 23 H 1.09001 * 109.47324 * 239.99937 * 2 1 3 24 24 H 1.09004 * 109.47168 * 119.99533 * 2 1 3 25 25 H 1.09004 * 109.46664 * 319.30503 * 4 3 2 26 26 H 1.09003 * 109.47050 * 79.29924 * 4 3 2 27 27 H 1.09000 * 109.46952 * 185.02280 * 5 4 3 28 28 H 1.09004 * 109.46936 * 305.02135 * 5 4 3 29 29 H 1.08991 * 109.46983 * 300.00463 * 7 6 5 30 30 H 1.09002 * 109.46616 * 60.00498 * 7 6 5 31 31 H 0.96999 * 119.99966 * 180.02562 * 11 10 8 32 32 H 1.08997 * 113.38807 * 199.12264 * 16 3 2 33 33 H 1.08994 * 113.47566 * 105.56096 * 17 16 3 34 34 H 1.08995 * 113.52987 * 335.09861 * 17 16 3 35 35 H 1.00903 * 111.00005 * 138.70454 * 18 17 16 36 36 H 1.09002 * 113.48078 * 87.75522 * 19 18 17 37 37 H 1.08999 * 113.48018 * 218.22932 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7961 2.0225 1.3045 5 6 1.8565 3.5430 1.1462 6 8 0.7736 3.9795 0.3221 7 6 0.7988 5.3762 0.0209 8 6 -0.3823 5.7240 -0.8479 9 1 -1.0819 4.9553 -1.1412 10 6 -0.5691 7.0234 -1.2694 11 7 0.2831 7.9594 -0.9127 12 14 -2.0328 7.4544 -2.3470 13 1 -2.8346 6.2315 -2.6052 14 1 -2.8761 8.4630 -1.6564 15 1 -1.5511 8.0114 -3.6366 16 6 3.4382 1.4419 -0.3775 17 6 3.7207 1.0179 -1.8256 18 7 4.9197 0.3167 -1.3299 19 6 4.2316 0.1735 -0.0335 20 1 -0.3634 0.5324 0.8790 21 1 -0.3633 0.4949 -0.9006 22 1 -0.3633 -1.0275 0.0217 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 0.8161 1.7354 1.6859 26 1 2.5671 1.6990 2.0038 27 1 1.7798 4.0137 2.1263 28 1 2.8021 3.8227 0.6818 29 1 0.7492 5.9485 0.9472 30 1 1.7218 5.6175 -0.5063 31 1 0.1515 8.8736 -1.2089 32 1 3.9281 2.3691 -0.0803 33 1 3.9488 1.8542 -2.4863 34 1 2.9658 0.3486 -2.2382 35 1 5.0280 -0.5786 -1.7826 36 1 3.6125 -0.7212 0.0332 37 1 4.8926 0.2943 0.8247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385217723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -4.034260 kcal Electronic energy + Delta-G solvation = -16380.958805 eV Core-core repulsion = 13773.788749 eV Total energy + Delta-G solvation = -2607.170056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.30234 -36.95829 -35.54098 -32.66943 -30.99705 -28.84787 -26.85240 -25.91836 -25.45447 -22.76990 -22.17815 -21.36968 -18.70698 -17.25083 -16.35601 -16.10898 -15.38270 -14.99450 -14.80589 -14.28331 -13.93525 -13.67548 -13.20515 -13.13844 -12.73543 -12.30190 -11.90891 -11.72139 -11.55909 -11.33582 -11.15188 -10.82019 -10.78109 -10.72757 -10.40487 -10.33427 -9.92981 -9.10999 -9.00318 -8.73005 -8.06272 -8.04605 -6.04588 -4.05160 3.33090 3.39349 3.46209 3.78322 4.29484 4.40683 4.51210 4.79962 4.93888 5.02346 5.22849 5.23369 5.32009 5.32508 5.53647 5.57033 5.65678 5.70521 5.79623 5.87102 5.90216 5.99713 6.05374 6.11843 6.19148 6.34712 6.44744 7.07895 7.18458 7.24695 7.27828 7.52393 7.87480 8.24476 8.70084 9.10129 9.59506 11.07243 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.005763 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.180850 B = 4857.138414 C = 5005.746111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.511 5.511 4 C 0.059 3.941 5 C 0.069 3.931 6 O -0.380 6.380 7 C 0.195 3.805 8 C -0.508 4.508 9 H 0.066 0.934 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.065 3.935 17 C 0.007 3.993 18 N -0.626 5.626 19 C -0.040 4.040 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.001 0.999 30 H 0.003 0.997 31 H 0.262 0.738 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.317 0.683 36 H 0.071 0.929 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 -16.191 2.689 17.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.234 5.234 4 C -0.068 4.068 5 C -0.010 4.010 6 O -0.299 6.299 7 C 0.120 3.880 8 C -0.546 4.546 9 H 0.085 0.915 10 C -0.146 4.146 11 N -0.540 5.540 12 Si 0.733 3.267 13 H -0.195 1.195 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.045 4.045 17 C -0.123 4.123 18 N -0.251 5.251 19 C -0.173 4.173 20 H 0.078 0.922 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.751 -15.271 2.335 16.484 hybrid contribution -0.655 -0.556 0.009 0.860 sum 5.095 -15.827 2.344 16.791 Atomic orbital electron populations 1.21785 0.94454 1.00639 1.03639 1.22129 0.96552 0.89209 0.99705 1.61818 1.15400 1.16141 1.29994 1.22185 1.01237 0.94599 0.88822 1.22223 0.91807 0.92637 0.94285 1.87924 1.45075 1.27920 1.68977 1.20163 0.97115 0.75968 0.94750 1.21101 1.09358 0.93953 1.30206 0.91534 1.24948 0.97063 0.95957 0.96646 1.69979 1.36441 1.01659 1.45942 0.86311 0.82050 0.78403 0.79911 1.19496 1.20933 1.20906 1.23388 0.87477 0.97708 0.95967 1.23765 0.91241 0.99465 0.97857 1.67249 1.32233 1.21318 1.04268 1.24476 0.97589 0.99876 0.95318 0.92245 0.91338 0.92969 0.91456 0.95136 0.89923 0.94069 0.94467 0.94650 0.98124 0.97898 0.92828 0.86775 0.89210 0.91285 0.87106 0.91111 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.99 37.16 0.37 -1.45 16 2 C 0.05 0.62 4.14 -3.82 -0.02 0.60 16 3 N -0.51 -7.52 4.47 -226.31 -1.01 -8.54 16 4 C 0.06 0.88 5.19 -3.82 -0.02 0.86 16 5 C 0.07 1.29 6.12 37.16 0.23 1.52 16 6 O -0.38 -9.32 10.27 -35.23 -0.36 -9.68 16 7 C 0.19 5.46 5.69 36.00 0.20 5.66 16 8 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 9 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 10 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 12 Si 0.91 22.21 29.54 -169.99 -5.02 17.19 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.06 0.87 4.01 -67.49 -0.27 0.60 16 17 C 0.01 0.09 8.13 -7.54 -0.06 0.03 16 18 N -0.63 -7.22 8.71 -122.67 -1.07 -8.29 16 19 C -0.04 -0.44 7.74 -7.55 -0.06 -0.50 16 20 H 0.06 0.78 6.51 -51.93 -0.34 0.44 16 21 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.07 0.74 5.77 -51.93 -0.30 0.44 16 24 H 0.03 0.33 7.30 -51.93 -0.38 -0.05 16 25 H 0.08 1.24 6.24 -51.93 -0.32 0.91 16 26 H 0.04 0.52 8.01 -51.93 -0.42 0.10 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.66 6.77 -51.93 -0.35 0.31 16 29 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.11 1.69 6.74 -51.93 -0.35 1.34 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 35 H 0.32 3.00 8.91 -39.29 -0.35 2.65 16 36 H 0.07 0.69 5.56 -51.93 -0.29 0.40 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -31.83 295.14 -8.27 -40.11 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -5.95 Total: -1.79 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -0.04 Total: -6.73 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -1.34 Total: -43.53 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.36 Total: -9.68 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.83 -8.27 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385217723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.073 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds