Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46903 * 109.47070 * 2 1 4 4 C 1.46904 * 111.00062 * 72.02512 * 3 2 1 5 5 C 1.52999 * 109.47196 * 199.30355 * 4 3 2 6 6 O 1.42899 * 109.47068 * 65.02087 * 5 4 3 7 7 C 1.42906 * 113.99761 * 184.79070 * 6 5 4 8 8 C 1.50694 * 109.46731 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00365 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99779 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99860 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00031 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47122 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47164 * 119.99647 * 12 10 8 15 15 H 1.48496 * 109.47079 * 239.99779 * 12 10 8 16 16 C 1.46901 * 111.00109 * 195.97556 * 3 2 1 17 17 C 1.53518 * 114.16635 * 66.04865 * 16 3 2 18 18 N 1.47480 * 87.92911 * 220.32920 * 17 16 3 19 19 C 1.47472 * 87.83978 * 27.01122 * 18 17 16 20 20 H 1.08999 * 109.47292 * 301.20326 * 1 2 3 21 21 H 1.08993 * 109.47057 * 61.20727 * 1 2 3 22 22 H 1.09004 * 109.46890 * 181.20905 * 1 2 3 23 23 H 1.09001 * 109.47324 * 239.99937 * 2 1 3 24 24 H 1.09004 * 109.47168 * 119.99533 * 2 1 3 25 25 H 1.09004 * 109.46664 * 319.30503 * 4 3 2 26 26 H 1.09003 * 109.47050 * 79.29924 * 4 3 2 27 27 H 1.09000 * 109.46952 * 185.02280 * 5 4 3 28 28 H 1.09004 * 109.46936 * 305.02135 * 5 4 3 29 29 H 1.08991 * 109.46983 * 300.00463 * 7 6 5 30 30 H 1.09002 * 109.46616 * 60.00498 * 7 6 5 31 31 H 0.96999 * 119.99966 * 180.02562 * 11 10 8 32 32 H 1.08997 * 113.38807 * 199.12264 * 16 3 2 33 33 H 1.08994 * 113.47566 * 105.56096 * 17 16 3 34 34 H 1.08995 * 113.52987 * 335.09861 * 17 16 3 35 35 H 1.00903 * 111.00005 * 138.70454 * 18 17 16 36 36 H 1.09002 * 113.48078 * 87.75522 * 19 18 17 37 37 H 1.08999 * 113.48018 * 218.22932 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7961 2.0225 1.3045 5 6 1.8565 3.5430 1.1462 6 8 0.7736 3.9795 0.3221 7 6 0.7988 5.3762 0.0209 8 6 -0.3823 5.7240 -0.8479 9 1 -1.0819 4.9553 -1.1412 10 6 -0.5691 7.0234 -1.2694 11 7 0.2831 7.9594 -0.9127 12 14 -2.0328 7.4544 -2.3470 13 1 -2.8346 6.2315 -2.6052 14 1 -2.8761 8.4630 -1.6564 15 1 -1.5511 8.0114 -3.6366 16 6 3.4382 1.4419 -0.3775 17 6 3.7207 1.0179 -1.8256 18 7 4.9197 0.3167 -1.3299 19 6 4.2316 0.1735 -0.0335 20 1 -0.3634 0.5324 0.8790 21 1 -0.3633 0.4949 -0.9006 22 1 -0.3633 -1.0275 0.0217 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 0.8161 1.7354 1.6859 26 1 2.5671 1.6990 2.0038 27 1 1.7798 4.0137 2.1263 28 1 2.8021 3.8227 0.6818 29 1 0.7492 5.9485 0.9472 30 1 1.7218 5.6175 -0.5063 31 1 0.1515 8.8736 -1.2089 32 1 3.9281 2.3691 -0.0803 33 1 3.9488 1.8542 -2.4863 34 1 2.9658 0.3486 -2.2382 35 1 5.0280 -0.5786 -1.7826 36 1 3.6125 -0.7212 0.0332 37 1 4.8926 0.2943 0.8247 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385217723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -29.677843 kcal Electronic energy + Delta-G solvation = -16382.070794 eV Core-core repulsion = 13773.788749 eV Total energy + Delta-G solvation = -2608.282046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30149 -38.61967 -36.85102 -34.88042 -32.20724 -30.25187 -28.82323 -26.89094 -26.56223 -24.50788 -23.80734 -22.57543 -19.73806 -18.64668 -18.21810 -17.31982 -17.25721 -16.33865 -16.24594 -15.87743 -15.36180 -14.83713 -14.74272 -14.31242 -13.98548 -13.58002 -13.50191 -13.09340 -12.88394 -12.73418 -12.64654 -12.58176 -12.33649 -12.10914 -11.75877 -11.66854 -11.47733 -11.21320 -10.83996 -10.15093 -9.99987 -9.09194 -8.30481 -6.42216 1.40099 1.41909 1.56720 2.36241 2.76663 3.03217 3.27162 3.33027 3.53906 3.87010 4.02048 4.18212 4.28935 4.32245 4.39708 4.46613 4.59659 4.63571 4.65513 4.74843 4.78913 4.86396 4.91678 4.96620 5.02517 5.04521 5.15286 5.21451 5.43267 5.57419 5.99567 6.15925 6.20655 6.31018 6.59502 6.88937 7.30168 8.82336 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.031271 B = 0.005763 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.180850 B = 4857.138414 C = 5005.746111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 N -0.538 5.538 4 C 0.069 3.931 5 C 0.059 3.941 6 O -0.392 6.392 7 C 0.210 3.790 8 C -0.542 4.542 9 H 0.060 0.940 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.983 3.017 13 H -0.264 1.264 14 H -0.270 1.270 15 H -0.272 1.272 16 C 0.053 3.947 17 C 0.008 3.992 18 N -0.634 5.634 19 C -0.023 4.023 20 H 0.047 0.953 21 H 0.041 0.959 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.031 0.969 29 H -0.018 1.018 30 H -0.021 1.021 31 H 0.270 0.730 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.332 0.668 36 H 0.090 0.910 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.036 -17.754 2.554 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 N -0.261 5.261 4 C -0.058 4.058 5 C -0.019 4.019 6 O -0.312 6.312 7 C 0.135 3.865 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.193 4.193 11 N -0.573 5.573 12 Si 0.806 3.194 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.197 1.197 16 C -0.057 4.057 17 C -0.122 4.122 18 N -0.259 5.259 19 C -0.155 4.155 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.098 0.902 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.000 1.000 30 H -0.003 1.003 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.108 0.892 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.310 -16.861 2.212 17.815 hybrid contribution -0.435 -0.096 0.089 0.454 sum 4.875 -16.957 2.301 17.793 Atomic orbital electron populations 1.21774 0.94995 1.01839 1.01700 1.22183 0.96012 0.87846 1.01285 1.61739 1.16345 1.18144 1.29913 1.22068 1.02400 0.91444 0.89937 1.22585 0.89931 0.95774 0.93570 1.87881 1.47476 1.25622 1.70208 1.19762 0.95602 0.77797 0.93330 1.21400 1.10210 0.94669 1.31690 0.92165 1.25972 1.00253 0.95418 0.97685 1.70086 1.38228 1.02306 1.46638 0.85138 0.77914 0.78417 0.77941 1.18818 1.19543 1.19721 1.23346 0.87262 0.98242 0.96800 1.23715 0.92032 0.99312 0.97178 1.67200 1.31687 1.22356 1.04680 1.24379 0.97118 0.98936 0.95105 0.93408 0.93946 0.90250 0.90248 0.92888 0.89810 0.90964 0.93619 0.95072 0.99995 1.00322 0.92115 0.88889 0.91093 0.90312 0.85487 0.89159 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.99 71.98 0.72 -2.65 16 2 C 0.05 1.15 4.14 86.30 0.36 1.51 16 3 N -0.54 -15.30 4.47 -869.90 -3.89 -19.18 16 4 C 0.07 2.00 5.19 86.30 0.45 2.44 16 5 C 0.06 2.26 6.12 71.98 0.44 2.70 16 6 O -0.39 -19.86 10.27 -148.98 -1.53 -21.39 16 7 C 0.21 12.29 5.69 71.23 0.41 12.70 16 8 C -0.54 -33.31 9.43 25.60 0.24 -33.07 16 9 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 10 C 0.00 0.28 5.46 84.65 0.46 0.74 16 11 N -0.93 -57.49 13.29 21.45 0.28 -57.21 16 12 Si 0.98 45.43 29.54 68.60 2.03 47.45 16 13 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.05 1.40 4.01 45.37 0.18 1.58 16 17 C 0.01 0.21 8.13 83.58 0.68 0.89 16 18 N -0.63 -13.49 8.71 -542.02 -4.72 -18.21 16 19 C -0.02 -0.45 7.74 83.58 0.65 0.19 16 20 H 0.05 1.20 6.51 -2.39 -0.02 1.18 16 21 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.08 1.51 5.77 -2.39 -0.01 1.50 16 24 H 0.05 0.93 7.30 -2.38 -0.02 0.91 16 25 H 0.08 2.41 6.24 -2.39 -0.01 2.39 16 26 H 0.07 1.65 8.01 -2.39 -0.02 1.63 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.03 1.21 6.77 -2.39 -0.02 1.20 16 29 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 30 H -0.02 -1.29 8.14 -2.39 -0.02 -1.31 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.09 2.80 6.74 -2.39 -0.02 2.79 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.77 6.73 -2.39 -0.02 1.75 16 35 H 0.33 5.47 8.91 -89.69 -0.80 4.67 16 36 H 0.09 1.42 5.56 -2.39 -0.01 1.41 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -69.20 295.14 -2.99 -72.19 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.25 Total: 9.31 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 4.58 Total: -12.97 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -8.32 Total: -94.60 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.53 Total: -21.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.20 -2.99 -72.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385217723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.515 kcal (2) G-P(sol) polarization free energy of solvation -69.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds