Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00104 * 2 1 4 4 H 1.08997 * 110.35597 * 327.14055 * 3 2 1 5 5 C 1.54594 * 110.30821 * 89.28677 * 3 2 1 6 6 C 1.54933 * 102.92252 * 140.87290 * 5 3 2 7 7 N 1.48534 * 103.22824 * 322.58255 * 6 5 3 8 8 C 1.46901 * 111.00172 * 159.71827 * 7 6 5 9 9 C 1.53000 * 109.46769 * 52.60936 * 8 7 6 10 10 O 1.42899 * 109.47405 * 64.99669 * 9 8 7 11 11 C 1.42901 * 113.99649 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46545 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00589 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31502 * 119.99832 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99825 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47252 * 60.00541 * 16 14 12 18 18 H 1.48501 * 109.46721 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47451 * 300.00244 * 16 14 12 20 20 C 1.47912 * 105.81750 * 39.20906 * 7 6 5 21 21 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46695 * 300.00133 * 1 2 3 23 23 H 1.08998 * 109.46839 * 59.99575 * 1 2 3 24 24 H 1.00901 * 110.99789 * 123.95504 * 2 1 3 25 25 H 1.09002 * 110.71950 * 259.22922 * 5 3 2 26 26 H 1.09000 * 110.72900 * 22.33562 * 5 3 2 27 27 H 1.08997 * 110.67236 * 204.14971 * 6 5 3 28 28 H 1.09001 * 110.67169 * 81.02116 * 6 5 3 29 29 H 1.09002 * 109.47401 * 292.60643 * 8 7 6 30 30 H 1.09001 * 109.46874 * 172.60656 * 8 7 6 31 31 H 1.09002 * 109.46642 * 184.99944 * 9 8 7 32 32 H 1.09002 * 109.47069 * 304.99474 * 9 8 7 33 33 H 1.08990 * 109.47463 * 299.99806 * 11 10 9 34 34 H 1.08992 * 109.47069 * 60.00902 * 11 10 9 35 35 H 0.97004 * 120.00403 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.91505 * 94.02357 * 20 7 6 37 37 H 1.08999 * 109.91449 * 215.12087 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3300 2.0330 -0.5545 5 6 2.1709 1.8788 1.4497 6 6 3.4983 2.6748 1.3800 7 7 4.3292 1.8694 0.4488 8 6 5.4174 2.6768 -0.1184 9 6 6.1995 3.3458 1.0137 10 8 6.8438 2.3446 1.8039 11 6 7.6060 2.8663 2.8943 12 6 8.2373 1.7290 3.6554 13 1 8.0733 0.7099 3.3379 14 6 9.0244 1.9897 4.7571 15 7 9.2237 3.2306 5.1440 16 14 9.8074 0.5800 5.7000 17 1 10.7008 -0.1857 4.7941 18 1 10.5984 1.1220 6.8340 19 1 8.7453 -0.3169 6.2220 20 6 3.4090 1.4012 -0.6104 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8306 -0.5262 0.7814 25 1 1.3446 2.5308 1.7328 26 1 2.2556 1.0424 2.1436 27 1 3.9660 2.7301 2.3630 28 1 3.3274 3.6733 0.9775 29 1 4.9993 3.4418 -0.7727 30 1 6.0858 2.0343 -0.6916 31 1 6.9499 4.0140 0.5913 32 1 5.5147 3.9178 1.6398 33 1 8.3857 3.5243 2.5108 34 1 6.9507 3.4285 3.5595 35 1 9.7771 3.4140 5.9193 36 1 3.4343 2.0896 -1.4551 37 1 3.6967 0.4020 -0.9372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385227023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -39.744864 kcal Electronic energy + Delta-G solvation = -16058.711646 eV Core-core repulsion = 13449.993062 eV Total energy + Delta-G solvation = -2608.718584 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27930 -36.74359 -35.15766 -32.70443 -31.28603 -28.94128 -27.76348 -26.44718 -24.35725 -22.69706 -22.22513 -20.62162 -20.21993 -16.49658 -16.23179 -15.95248 -15.47177 -15.38766 -14.42600 -14.33688 -13.89182 -13.66696 -13.48628 -13.23430 -12.37575 -12.30821 -12.06699 -11.77371 -11.64168 -11.49542 -11.13835 -11.03356 -10.79291 -10.78300 -10.61466 -10.37491 -9.92853 -9.05365 -8.75317 -8.55320 -8.12670 -8.07544 -6.06016 -4.06959 3.36254 3.38238 3.42906 4.02836 4.20013 4.39949 4.68214 4.69716 4.96232 5.01308 5.20915 5.28402 5.30434 5.34553 5.40717 5.53339 5.66016 5.67763 5.73493 5.81624 5.91214 6.04439 6.06927 6.12550 6.19828 6.37489 6.89153 7.09425 7.14471 7.25070 7.29802 7.48051 7.85832 8.21880 8.66610 9.07659 9.57765 11.05676 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.005022 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.467963 B = 5574.322374 C = 5976.303428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.687 5.687 3 C 0.078 3.922 4 H 0.079 0.921 5 C -0.151 4.151 6 C 0.038 3.962 7 N -0.501 5.501 8 C 0.053 3.947 9 C 0.063 3.937 10 O -0.380 6.380 11 C 0.194 3.806 12 C -0.511 4.511 13 H 0.067 0.933 14 C 0.056 3.944 15 N -0.901 5.901 16 Si 0.908 3.092 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.042 3.958 21 H 0.066 0.934 22 H 0.021 0.979 23 H 0.061 0.939 24 H 0.349 0.651 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.264 0.736 36 H 0.041 0.959 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.465 -1.139 -9.927 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.317 5.317 3 C -0.033 4.033 4 H 0.097 0.903 5 C -0.191 4.191 6 C -0.091 4.091 7 N -0.225 5.225 8 C -0.076 4.076 9 C -0.015 4.015 10 O -0.299 6.299 11 C 0.120 3.880 12 C -0.549 4.549 13 H 0.085 0.915 14 C -0.145 4.145 15 N -0.541 5.541 16 Si 0.735 3.265 17 H -0.200 1.200 18 H -0.212 1.212 19 H -0.200 1.200 20 C -0.087 4.087 21 H 0.085 0.915 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.168 0.832 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.080 -1.751 -10.254 18.320 hybrid contribution -0.049 0.789 1.135 1.384 sum -15.130 -0.961 -9.119 17.691 Atomic orbital electron populations 1.22202 0.88167 1.01723 1.00143 1.60504 1.07349 1.13317 1.50565 1.22466 0.96120 0.89479 0.95230 0.90296 1.23220 0.97535 1.00884 0.97459 1.23175 0.92470 0.94431 0.98977 1.64811 1.08472 1.35292 1.13944 1.22337 0.93565 0.95702 0.95949 1.22307 0.94997 0.91588 0.92654 1.87964 1.66735 1.31468 1.43742 1.20173 0.89302 0.95290 0.83277 1.21039 1.29206 0.93644 1.11048 0.91522 1.24943 0.96386 0.96131 0.97057 1.69954 1.39285 1.18454 1.26374 0.86400 0.79253 0.81795 0.79052 1.20006 1.21237 1.20022 1.22967 0.90751 1.01795 0.93173 0.91532 0.96063 0.91981 0.83237 0.91481 0.90452 0.89225 0.94222 0.94322 0.89868 0.94290 0.94584 0.97999 0.98000 0.92695 0.94068 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.55 60.07 0.63 0.86 16 2 N -0.69 -7.26 6.56 -112.56 -0.74 -8.00 16 3 C 0.08 0.87 3.31 -66.36 -0.22 0.65 16 4 H 0.08 0.80 7.82 -51.93 -0.41 0.40 16 5 C -0.15 -1.78 6.72 -24.87 -0.17 -1.95 16 6 C 0.04 0.54 5.09 -1.90 -0.01 0.53 16 7 N -0.50 -7.90 5.34 -230.44 -1.23 -9.13 16 8 C 0.05 0.83 5.41 -3.82 -0.02 0.81 16 9 C 0.06 1.20 5.76 37.16 0.21 1.41 16 10 O -0.38 -9.48 10.27 -35.23 -0.36 -9.84 16 11 C 0.19 5.46 5.69 36.01 0.20 5.67 16 12 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 13 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.38 13.28 55.43 0.74 -26.65 16 16 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.04 0.54 6.49 -2.75 -0.02 0.52 16 21 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 24 H 0.35 3.73 8.18 -39.29 -0.32 3.41 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.96 7.56 -51.93 -0.39 0.57 16 27 H 0.09 1.51 7.56 -51.93 -0.39 1.12 16 28 H 0.04 0.52 8.01 -51.93 -0.42 0.10 16 29 H 0.04 0.51 7.81 -51.93 -0.41 0.11 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.04 0.49 7.57 -51.93 -0.39 0.09 16 37 H 0.09 1.23 7.93 -51.93 -0.41 0.82 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -31.79 300.39 -8.30 -40.09 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -6.40 Total: -2.51 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 0.20 Total: -5.70 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -1.23 Total: -43.78 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.36 Total: -9.84 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.79 -8.30 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.346 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds