Wall clock time and date at job start Mon Mar 30 2020 03:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 111.00104 * 2 1 4 4 H 1.08997 * 110.35597 * 327.14055 * 3 2 1 5 5 C 1.54594 * 110.30821 * 89.28677 * 3 2 1 6 6 C 1.54933 * 102.92252 * 140.87290 * 5 3 2 7 7 N 1.48534 * 103.22824 * 322.58255 * 6 5 3 8 8 C 1.46901 * 111.00172 * 159.71827 * 7 6 5 9 9 C 1.53000 * 109.46769 * 52.60936 * 8 7 6 10 10 O 1.42899 * 109.47405 * 64.99669 * 9 8 7 11 11 C 1.42901 * 113.99649 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46545 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00589 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99844 * 180.02562 * 12 11 10 15 15 N 1.31502 * 119.99832 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99825 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47252 * 60.00541 * 16 14 12 18 18 H 1.48501 * 109.46721 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47451 * 300.00244 * 16 14 12 20 20 C 1.47912 * 105.81750 * 39.20906 * 7 6 5 21 21 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46695 * 300.00133 * 1 2 3 23 23 H 1.08998 * 109.46839 * 59.99575 * 1 2 3 24 24 H 1.00901 * 110.99789 * 123.95504 * 2 1 3 25 25 H 1.09002 * 110.71950 * 259.22922 * 5 3 2 26 26 H 1.09000 * 110.72900 * 22.33562 * 5 3 2 27 27 H 1.08997 * 110.67236 * 204.14971 * 6 5 3 28 28 H 1.09001 * 110.67169 * 81.02116 * 6 5 3 29 29 H 1.09002 * 109.47401 * 292.60643 * 8 7 6 30 30 H 1.09001 * 109.46874 * 172.60656 * 8 7 6 31 31 H 1.09002 * 109.46642 * 184.99944 * 9 8 7 32 32 H 1.09002 * 109.47069 * 304.99474 * 9 8 7 33 33 H 1.08990 * 109.47463 * 299.99806 * 11 10 9 34 34 H 1.08992 * 109.47069 * 60.00902 * 11 10 9 35 35 H 0.97004 * 120.00403 * 179.97438 * 15 14 12 36 36 H 1.08997 * 109.91505 * 94.02357 * 20 7 6 37 37 H 1.08999 * 109.91449 * 215.12087 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3300 2.0330 -0.5545 5 6 2.1709 1.8788 1.4497 6 6 3.4983 2.6748 1.3800 7 7 4.3292 1.8694 0.4488 8 6 5.4174 2.6768 -0.1184 9 6 6.1995 3.3458 1.0137 10 8 6.8438 2.3446 1.8039 11 6 7.6060 2.8663 2.8943 12 6 8.2373 1.7290 3.6554 13 1 8.0733 0.7099 3.3379 14 6 9.0244 1.9897 4.7571 15 7 9.2237 3.2306 5.1440 16 14 9.8074 0.5800 5.7000 17 1 10.7008 -0.1857 4.7941 18 1 10.5984 1.1220 6.8340 19 1 8.7453 -0.3169 6.2220 20 6 3.4090 1.4012 -0.6104 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8306 -0.5262 0.7814 25 1 1.3446 2.5308 1.7328 26 1 2.2556 1.0424 2.1436 27 1 3.9660 2.7301 2.3630 28 1 3.3274 3.6733 0.9775 29 1 4.9993 3.4418 -0.7727 30 1 6.0858 2.0343 -0.6916 31 1 6.9499 4.0140 0.5913 32 1 5.5147 3.9178 1.6398 33 1 8.3857 3.5243 2.5108 34 1 6.9507 3.4285 3.5595 35 1 9.7771 3.4140 5.9193 36 1 3.4343 2.0896 -1.4551 37 1 3.6967 0.4020 -0.9372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385227023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:17 Heat of formation + Delta-G solvation = -64.552789 kcal Electronic energy + Delta-G solvation = -16059.787399 eV Core-core repulsion = 13449.993062 eV Total energy + Delta-G solvation = -2609.794337 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36944 -38.47188 -36.27577 -34.89080 -32.50000 -30.18859 -29.35420 -28.08092 -25.16255 -24.50324 -23.92019 -21.61639 -21.40772 -18.62650 -17.57983 -17.33254 -16.87270 -16.67196 -16.28683 -15.53373 -15.36772 -14.87523 -14.81711 -14.37389 -13.93344 -13.55943 -13.24606 -13.12099 -12.97213 -12.77061 -12.67747 -12.60056 -12.29577 -12.17409 -12.05341 -11.73173 -11.66962 -11.27880 -10.85407 -10.20089 -9.36230 -9.23908 -8.31816 -6.44034 1.39770 1.44910 1.53290 2.35384 2.99719 3.01800 3.18999 3.33257 3.69014 3.77117 4.07284 4.21473 4.24787 4.31177 4.41793 4.53051 4.60128 4.62270 4.67667 4.72511 4.81752 4.88344 4.94445 4.98938 5.05433 5.07028 5.11810 5.17959 5.55303 5.96855 5.99062 6.07957 6.16558 6.41592 6.56153 6.85047 7.28183 8.80448 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.035639 B = 0.005022 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.467963 B = 5574.322374 C = 5976.303428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.696 5.696 3 C 0.086 3.914 4 H 0.097 0.903 5 C -0.143 4.143 6 C 0.037 3.963 7 N -0.531 5.531 8 C 0.061 3.939 9 C 0.054 3.946 10 O -0.396 6.396 11 C 0.210 3.790 12 C -0.548 4.548 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.983 3.017 17 H -0.265 1.265 18 H -0.273 1.273 19 H -0.266 1.266 20 C 0.044 3.956 21 H 0.074 0.926 22 H 0.025 0.975 23 H 0.069 0.931 24 H 0.345 0.655 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.040 0.960 33 H -0.016 1.016 34 H -0.018 1.018 35 H 0.271 0.729 36 H 0.057 0.943 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -1.745 -10.379 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.326 5.326 3 C -0.025 4.025 4 H 0.115 0.885 5 C -0.183 4.183 6 C -0.091 4.091 7 N -0.256 5.256 8 C -0.067 4.067 9 C -0.024 4.024 10 O -0.316 6.316 11 C 0.134 3.866 12 C -0.586 4.586 13 H 0.078 0.922 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.806 3.194 17 H -0.190 1.190 18 H -0.198 1.198 19 H -0.191 1.191 20 C -0.084 4.084 21 H 0.093 0.907 22 H 0.044 0.956 23 H 0.087 0.913 24 H 0.164 0.836 25 H 0.105 0.895 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.002 0.998 34 H 0.000 1.000 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.043 -2.349 -10.732 19.444 hybrid contribution 0.199 1.031 1.223 1.612 sum -15.844 -1.318 -9.508 18.525 Atomic orbital electron populations 1.22256 0.86687 1.02543 1.00661 1.60513 1.08769 1.12868 1.50480 1.22408 0.95426 0.90140 0.94496 0.88517 1.23173 0.96665 1.00469 0.97978 1.23111 0.93282 0.95643 0.97091 1.64719 1.09528 1.35945 1.15449 1.22261 0.93431 0.96423 0.94619 1.22652 0.95326 0.91281 0.93103 1.87917 1.66760 1.33565 1.43344 1.19787 0.88611 0.94367 0.83795 1.21355 1.30882 0.93750 1.12582 0.92244 1.25953 0.96286 0.99267 0.97585 1.70058 1.39468 1.20680 1.26859 0.85239 0.78441 0.78072 0.77692 1.18987 1.19810 1.19098 1.22969 0.91141 1.01367 0.92931 0.90678 0.95631 0.91256 0.83615 0.89472 0.91594 0.92733 0.92682 0.90858 0.90421 0.93439 0.94192 0.99836 1.00005 0.92027 0.92455 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.55 127.69 1.35 1.75 16 2 N -0.70 -13.50 6.56 -510.03 -3.35 -16.84 16 3 C 0.09 1.74 3.31 45.79 0.15 1.89 16 4 H 0.10 1.64 7.82 -2.39 -0.02 1.62 16 5 C -0.14 -3.18 6.72 31.80 0.21 -2.97 16 6 C 0.04 1.04 5.09 86.65 0.44 1.48 16 7 N -0.53 -16.44 5.34 -882.99 -4.72 -21.16 16 8 C 0.06 1.86 5.41 86.30 0.47 2.33 16 9 C 0.05 2.07 5.76 71.98 0.41 2.49 16 10 O -0.40 -20.39 10.27 -148.98 -1.53 -21.92 16 11 C 0.21 12.25 5.69 71.24 0.41 12.65 16 12 C -0.55 -33.83 9.43 25.60 0.24 -33.59 16 13 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 14 C 0.01 0.44 5.46 84.66 0.46 0.90 16 15 N -0.93 -57.07 13.28 21.45 0.28 -56.79 16 16 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 20 C 0.04 1.06 6.49 86.44 0.56 1.62 16 21 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 22 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.07 0.91 8.07 -2.39 -0.02 0.89 16 24 H 0.35 7.05 8.18 -89.69 -0.73 6.32 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.61 7.56 -2.39 -0.02 1.59 16 27 H 0.05 1.91 7.56 -2.39 -0.02 1.89 16 28 H 0.05 1.36 8.01 -2.39 -0.02 1.35 16 29 H 0.07 1.76 7.81 -2.39 -0.02 1.74 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.51 6.52 -2.39 -0.02 1.49 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.06 1.19 7.57 -2.39 -0.02 1.18 16 37 H 0.08 2.07 7.93 -2.39 -0.02 2.05 16 Total: -1.00 -68.71 300.39 -2.29 -71.00 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.29 Total: 9.74 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.71 Total: -11.44 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -7.78 Total: -94.79 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.53 Total: -21.92 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.71 -2.29 -71.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385227023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.445 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds