Wall clock time and date at job start Mon Mar 30 2020 03:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99820 * 2 1 4 4 C 1.52994 * 109.47266 * 286.94363 * 3 2 1 5 5 O 1.42903 * 109.46991 * 66.86177 * 4 3 2 6 6 C 1.42900 * 113.99556 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46804 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00124 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47107 * 90.00288 * 11 9 7 13 13 H 1.48496 * 109.47249 * 210.00084 * 11 9 7 14 14 H 1.48503 * 109.47185 * 330.00421 * 11 9 7 15 15 C 1.46895 * 110.99643 * 123.95684 * 2 1 3 16 16 H 1.08995 * 110.27625 * 296.67499 * 15 2 1 17 17 C 1.54597 * 110.31438 * 58.87596 * 15 2 1 18 18 C 1.54940 * 102.92357 * 140.86793 * 17 15 2 19 19 N 1.48805 * 103.34670 * 322.69152 * 18 17 15 20 20 C 1.47902 * 105.68243 * 38.97664 * 19 18 17 21 21 H 1.09005 * 109.46843 * 303.39169 * 1 2 3 22 22 H 1.09004 * 109.47454 * 63.39228 * 1 2 3 23 23 H 1.09002 * 109.47579 * 183.39820 * 1 2 3 24 24 H 1.08998 * 109.46963 * 46.95021 * 3 2 1 25 25 H 1.09008 * 109.46791 * 166.94598 * 3 2 1 26 26 H 1.09001 * 109.47305 * 186.86237 * 4 3 2 27 27 H 1.09003 * 109.47284 * 306.85930 * 4 3 2 28 28 H 1.08997 * 109.47702 * 299.99789 * 6 5 4 29 29 H 1.08999 * 109.47211 * 60.00354 * 6 5 4 30 30 H 0.96998 * 119.99879 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.72028 * 259.23198 * 17 15 2 32 32 H 1.09009 * 110.72131 * 22.50947 * 17 15 2 33 33 H 1.08999 * 110.66132 * 81.02553 * 18 17 15 34 34 H 1.08998 * 110.66095 * 204.14976 * 18 17 15 35 35 H 1.00896 * 110.95889 * 278.57012 * 19 18 17 36 36 H 1.08993 * 109.91833 * 215.45048 * 20 19 18 37 37 H 1.09000 * 109.91387 * 94.34886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7857 1.9982 -1.3798 5 8 0.3871 2.1704 -1.6172 6 6 0.0803 2.7527 -2.8856 7 6 -1.4139 2.8877 -3.0281 8 1 -2.0641 2.5619 -2.2296 9 6 -1.9509 3.4271 -4.1777 10 7 -3.2549 3.5444 -4.3022 11 14 -0.8263 3.9913 -5.5584 12 1 -0.5887 2.8639 -6.4953 13 1 -1.4647 5.1156 -6.2887 14 1 0.4687 4.4429 -4.9888 15 6 1.9954 -0.7660 1.1375 16 1 1.7022 -0.2971 2.0767 17 6 1.4881 -2.2254 1.0826 18 6 2.7259 -3.0398 1.5354 19 7 3.8644 -2.3048 0.9206 20 6 3.5292 -0.8699 1.0480 21 1 -0.3633 0.5656 0.8581 22 1 -0.3634 0.4603 -0.9188 23 1 -0.3634 -1.0258 0.0609 24 1 1.4707 1.9620 0.7510 25 1 3.0603 1.3518 0.2321 26 1 2.2828 2.9675 -1.4180 27 1 2.2061 1.3441 -2.1437 28 1 0.5419 3.7377 -2.9545 29 1 0.4653 2.1145 -3.6810 30 1 -3.6326 3.9236 -5.1111 31 1 0.6570 -2.3709 1.7727 32 1 1.1991 -2.4953 0.0668 33 1 2.8115 -3.0373 2.6220 34 1 2.6753 -4.0599 1.1547 35 1 3.9809 -2.5643 -0.0474 36 1 3.8878 -0.3258 0.1742 37 1 3.9824 -0.4615 1.9513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385251082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:07 Heat of formation + Delta-G solvation = -34.874341 kcal Electronic energy + Delta-G solvation = -16304.063638 eV Core-core repulsion = 13695.556255 eV Total energy + Delta-G solvation = -2608.507383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34523 -37.19654 -35.27193 -32.64315 -30.40151 -29.05075 -28.31447 -27.49295 -24.40041 -22.17480 -21.83980 -21.14232 -19.71043 -16.99986 -16.88386 -15.87001 -15.73515 -15.46224 -14.56026 -14.33869 -13.99891 -13.83351 -13.56761 -12.71322 -12.47721 -12.19761 -12.01343 -11.89223 -11.53791 -11.51461 -11.30550 -11.03813 -11.01126 -10.77605 -10.66835 -10.32384 -9.87367 -9.18936 -8.85344 -8.77987 -8.45701 -8.12242 -6.13208 -4.12275 3.24084 3.31127 3.32625 3.95977 4.16288 4.34485 4.56499 4.67768 4.84590 5.06930 5.17613 5.18724 5.31177 5.40358 5.46135 5.61396 5.71593 5.77054 5.80710 5.85705 5.91643 5.94234 6.04569 6.07953 6.24160 6.55753 6.59949 6.82193 7.00139 7.15412 7.25027 7.36493 7.59383 8.00463 8.64901 8.97226 9.46419 10.99788 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.049891 B = 0.005124 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.093060 B = 5463.036169 C = 5675.122433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.055 3.945 4 C 0.063 3.937 5 O -0.377 6.377 6 C 0.168 3.832 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.049 3.951 16 H 0.044 0.956 17 C -0.150 4.150 18 C 0.042 3.958 19 N -0.673 5.673 20 C 0.045 3.955 21 H 0.019 0.981 22 H 0.109 0.891 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.001 0.999 29 H -0.001 1.001 30 H 0.266 0.734 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.339 0.661 36 H 0.077 0.923 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.802 -9.336 9.691 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.254 5.254 3 C -0.072 4.072 4 C -0.015 4.015 5 O -0.296 6.296 6 C 0.093 3.907 7 C -0.556 4.556 8 H 0.099 0.901 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.061 4.061 16 H 0.062 0.938 17 C -0.189 4.189 18 C -0.087 4.087 19 N -0.299 5.299 20 C -0.085 4.085 21 H 0.038 0.962 22 H 0.127 0.873 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.154 -9.591 9.836 19.021 hybrid contribution -0.435 1.020 -0.898 1.427 sum 12.720 -8.571 8.938 17.752 Atomic orbital electron populations 1.22685 0.85711 1.00650 1.03827 1.62221 1.09439 1.13152 1.40584 1.22211 0.99432 0.88553 0.97048 1.22339 0.85666 0.97691 0.95804 1.87890 1.20201 1.82809 1.38743 1.20588 0.97527 0.91480 0.81147 1.20883 0.89220 1.41549 1.03970 0.90062 1.24765 0.95017 0.95221 0.97927 1.69875 1.10391 1.45190 1.27985 0.86848 0.81304 0.78977 0.82597 1.19919 1.20823 1.19133 1.22974 0.95760 0.94537 0.92804 0.93780 1.23181 0.98812 0.94206 1.02687 1.23127 0.88150 0.97260 1.00210 1.62894 1.40840 1.04047 1.22166 1.22852 0.93120 0.90196 1.02318 0.96199 0.87313 0.92641 0.94010 0.90206 0.94065 0.93513 0.98104 0.98359 0.92374 0.91158 0.90060 0.90482 0.90735 0.84530 0.90411 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.92 60.07 0.54 0.84 16 2 N -0.53 -7.77 4.49 -233.25 -1.05 -8.82 16 3 C 0.06 0.81 5.27 -3.83 -0.02 0.79 16 4 C 0.06 1.10 6.23 37.15 0.23 1.33 16 5 O -0.38 -8.50 7.39 -35.23 -0.26 -8.76 16 6 C 0.17 4.22 4.76 36.01 0.17 4.39 16 7 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16 8 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 11 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 15 C 0.05 0.60 2.73 -66.36 -0.18 0.41 16 16 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 17 C -0.15 -1.60 5.38 -24.87 -0.13 -1.74 16 18 C 0.04 0.39 7.55 -1.74 -0.01 0.38 16 19 N -0.67 -6.93 7.53 -109.87 -0.83 -7.76 16 20 C 0.05 0.49 6.48 -2.75 -0.02 0.47 16 21 H 0.02 0.32 8.04 -51.93 -0.42 -0.09 16 22 H 0.11 2.20 5.59 -51.93 -0.29 1.91 16 23 H 0.05 0.82 6.61 -51.93 -0.34 0.47 16 24 H 0.04 0.64 7.96 -51.93 -0.41 0.23 16 25 H 0.08 0.95 6.11 -51.92 -0.32 0.64 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.00 0.03 7.20 -51.93 -0.37 -0.34 16 29 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.97 7.65 -51.92 -0.40 0.57 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.34 3.30 8.92 -39.29 -0.35 2.95 16 36 H 0.08 0.86 6.59 -51.93 -0.34 0.52 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -30.68 289.97 -7.72 -38.40 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.19 Total: -0.71 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 0.13 Total: -6.68 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -1.10 Total: -43.36 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -0.26 Total: -8.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.68 -7.72 -38.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.526 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds