Wall clock time and date at job start Mon Mar 30 2020 03:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99820 * 2 1 4 4 C 1.52994 * 109.47266 * 286.94363 * 3 2 1 5 5 O 1.42903 * 109.46991 * 66.86177 * 4 3 2 6 6 C 1.42900 * 113.99556 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46804 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99942 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00167 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00124 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99924 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47107 * 90.00288 * 11 9 7 13 13 H 1.48496 * 109.47249 * 210.00084 * 11 9 7 14 14 H 1.48503 * 109.47185 * 330.00421 * 11 9 7 15 15 C 1.46895 * 110.99643 * 123.95684 * 2 1 3 16 16 H 1.08995 * 110.27625 * 296.67499 * 15 2 1 17 17 C 1.54597 * 110.31438 * 58.87596 * 15 2 1 18 18 C 1.54940 * 102.92357 * 140.86793 * 17 15 2 19 19 N 1.48805 * 103.34670 * 322.69152 * 18 17 15 20 20 C 1.47902 * 105.68243 * 38.97664 * 19 18 17 21 21 H 1.09005 * 109.46843 * 303.39169 * 1 2 3 22 22 H 1.09004 * 109.47454 * 63.39228 * 1 2 3 23 23 H 1.09002 * 109.47579 * 183.39820 * 1 2 3 24 24 H 1.08998 * 109.46963 * 46.95021 * 3 2 1 25 25 H 1.09008 * 109.46791 * 166.94598 * 3 2 1 26 26 H 1.09001 * 109.47305 * 186.86237 * 4 3 2 27 27 H 1.09003 * 109.47284 * 306.85930 * 4 3 2 28 28 H 1.08997 * 109.47702 * 299.99789 * 6 5 4 29 29 H 1.08999 * 109.47211 * 60.00354 * 6 5 4 30 30 H 0.96998 * 119.99879 * 180.02562 * 10 9 7 31 31 H 1.08999 * 110.72028 * 259.23198 * 17 15 2 32 32 H 1.09009 * 110.72131 * 22.50947 * 17 15 2 33 33 H 1.08999 * 110.66132 * 81.02553 * 18 17 15 34 34 H 1.08998 * 110.66095 * 204.14976 * 18 17 15 35 35 H 1.00896 * 110.95889 * 278.57012 * 19 18 17 36 36 H 1.08993 * 109.91833 * 215.45048 * 20 19 18 37 37 H 1.09000 * 109.91387 * 94.34886 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7857 1.9982 -1.3798 5 8 0.3871 2.1704 -1.6172 6 6 0.0803 2.7527 -2.8856 7 6 -1.4139 2.8877 -3.0281 8 1 -2.0641 2.5619 -2.2296 9 6 -1.9509 3.4271 -4.1777 10 7 -3.2549 3.5444 -4.3022 11 14 -0.8263 3.9913 -5.5584 12 1 -0.5887 2.8639 -6.4953 13 1 -1.4647 5.1156 -6.2887 14 1 0.4687 4.4429 -4.9888 15 6 1.9954 -0.7660 1.1375 16 1 1.7022 -0.2971 2.0767 17 6 1.4881 -2.2254 1.0826 18 6 2.7259 -3.0398 1.5354 19 7 3.8644 -2.3048 0.9206 20 6 3.5292 -0.8699 1.0480 21 1 -0.3633 0.5656 0.8581 22 1 -0.3634 0.4603 -0.9188 23 1 -0.3634 -1.0258 0.0609 24 1 1.4707 1.9620 0.7510 25 1 3.0603 1.3518 0.2321 26 1 2.2828 2.9675 -1.4180 27 1 2.2061 1.3441 -2.1437 28 1 0.5419 3.7377 -2.9545 29 1 0.4653 2.1145 -3.6810 30 1 -3.6326 3.9236 -5.1111 31 1 0.6570 -2.3709 1.7727 32 1 1.1991 -2.4953 0.0668 33 1 2.8115 -3.0373 2.6220 34 1 2.6753 -4.0599 1.1547 35 1 3.9809 -2.5643 -0.0474 36 1 3.8878 -0.3258 0.1742 37 1 3.9824 -0.4615 1.9513 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385251082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:06 Heat of formation + Delta-G solvation = -59.083054 kcal Electronic energy + Delta-G solvation = -16305.113407 eV Core-core repulsion = 13695.556255 eV Total energy + Delta-G solvation = -2609.557151 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35850 -38.71078 -36.51147 -34.82653 -31.67456 -30.28516 -29.42834 -29.16519 -25.66741 -23.92914 -23.20360 -22.16054 -20.72733 -19.04938 -18.02412 -17.27417 -17.11323 -16.71690 -16.30195 -15.64426 -15.23777 -15.03963 -14.79386 -14.62041 -13.98305 -13.48862 -13.26087 -13.13330 -12.99142 -12.80612 -12.55120 -12.42407 -12.31927 -11.90224 -11.85573 -11.80810 -11.72452 -11.29180 -10.91330 -10.27577 -9.62776 -9.30400 -8.37737 -6.45206 1.32936 1.35511 1.46356 2.28824 2.86476 2.95320 3.10286 3.33683 3.67280 4.00461 4.06925 4.22254 4.31298 4.36830 4.47104 4.52254 4.53987 4.59023 4.63584 4.69703 4.78933 4.89502 4.94437 4.97131 4.99942 5.05035 5.17249 5.34086 5.48990 5.76015 5.93303 6.02139 6.18611 6.44098 6.58747 6.75543 7.19536 8.79313 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.049891 B = 0.005124 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.093060 B = 5463.036169 C = 5675.122433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.534 5.534 3 C 0.060 3.940 4 C 0.054 3.946 5 O -0.397 6.397 6 C 0.179 3.821 7 C -0.542 4.542 8 H 0.030 0.970 9 C 0.014 3.986 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.261 1.261 13 H -0.274 1.274 14 H -0.246 1.246 15 C 0.048 3.952 16 H 0.043 0.957 17 C -0.148 4.148 18 C 0.048 3.952 19 N -0.676 5.676 20 C 0.051 3.949 21 H 0.012 0.988 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.032 0.968 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.010 0.990 29 H 0.007 0.993 30 H 0.272 0.728 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.343 0.657 36 H 0.077 0.923 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -9.662 9.426 20.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.259 5.259 3 C -0.068 4.068 4 C -0.023 4.023 5 O -0.316 6.316 6 C 0.103 3.897 7 C -0.579 4.579 8 H 0.049 0.951 9 C -0.184 4.184 10 N -0.582 5.582 11 Si 0.776 3.224 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.170 1.170 15 C -0.062 4.062 16 H 0.061 0.939 17 C -0.187 4.187 18 C -0.082 4.082 19 N -0.303 5.303 20 C -0.080 4.080 21 H 0.031 0.969 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.050 0.950 25 H 0.132 0.868 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.095 0.905 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 15.863 -9.934 9.598 21.034 hybrid contribution -1.317 1.055 -0.704 1.829 sum 14.546 -8.879 8.894 19.223 Atomic orbital electron populations 1.22455 0.87331 1.00850 1.01300 1.62203 1.08006 1.13455 1.42210 1.22236 1.01296 0.88197 0.95024 1.22673 0.82994 0.99042 0.97565 1.87900 1.23709 1.82668 1.37355 1.20282 0.94516 0.92167 0.82722 1.21149 0.91410 1.42166 1.03202 0.95115 1.25814 0.96815 0.94828 1.00967 1.70032 1.12834 1.46097 1.29286 0.85624 0.79451 0.78931 0.78426 1.18530 1.19897 1.16960 1.23081 0.96866 0.94726 0.91546 0.93921 1.23162 0.99780 0.93627 1.02133 1.23151 0.86802 0.97613 1.00595 1.62920 1.41075 1.03777 1.22541 1.22816 0.91774 0.90684 1.02706 0.96938 0.91324 0.91314 0.94966 0.86769 0.92368 0.93027 0.97246 0.97481 0.91850 0.90696 0.91336 0.89789 0.89291 0.84181 0.90490 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 8.92 127.69 1.14 2.10 16 2 N -0.53 -15.17 4.49 -891.87 -4.00 -19.18 16 3 C 0.06 1.67 5.27 86.30 0.45 2.12 16 4 C 0.05 1.82 6.23 71.98 0.45 2.27 16 5 O -0.40 -18.06 7.39 -148.98 -1.10 -19.16 16 6 C 0.18 8.96 4.76 71.24 0.34 9.30 16 7 C -0.54 -32.92 9.99 25.60 0.26 -32.66 16 8 H 0.03 2.10 8.06 -2.91 -0.02 2.07 16 9 C 0.01 0.81 5.47 84.65 0.46 1.27 16 10 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 11 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 13 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.25 -10.36 6.54 99.48 0.65 -9.70 16 15 C 0.05 1.06 2.73 45.80 0.12 1.19 16 16 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 17 C -0.15 -2.92 5.38 31.80 0.17 -2.75 16 18 C 0.05 0.77 7.55 86.60 0.65 1.43 16 19 N -0.68 -12.19 7.53 -501.53 -3.78 -15.97 16 20 C 0.05 0.96 6.48 86.45 0.56 1.52 16 21 H 0.01 0.41 8.04 -2.38 -0.02 0.39 16 22 H 0.07 2.91 5.59 -2.39 -0.01 2.90 16 23 H 0.07 2.06 6.61 -2.39 -0.02 2.04 16 24 H 0.03 0.96 7.96 -2.39 -0.02 0.94 16 25 H 0.11 2.39 6.11 -2.38 -0.01 2.37 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 29 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.55 7.65 -2.38 -0.02 1.53 16 33 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.34 5.84 8.92 -89.70 -0.80 5.04 16 36 H 0.08 1.48 6.59 -2.39 -0.02 1.47 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.85 289.97 -1.91 -69.76 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.18 Total: 12.52 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: 4.61 Total: -14.21 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -7.48 Total: -94.32 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -1.10 Total: -19.16 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Total: -67.85 -1.91 -69.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.680 kcal (2) G-P(sol) polarization free energy of solvation -67.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds