Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99953 * 2 1 4 4 C 1.52996 * 109.47114 * 199.68053 * 3 2 1 5 5 O 1.42900 * 109.47386 * 64.58000 * 4 3 2 6 6 C 1.42900 * 114.00125 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46938 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00569 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99693 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99852 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00031 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47474 * 90.00050 * 11 9 7 13 13 H 1.48503 * 109.46873 * 210.00254 * 11 9 7 14 14 H 1.48497 * 109.47100 * 329.99958 * 11 9 7 15 15 C 1.46907 * 111.00039 * 123.94704 * 2 1 3 16 16 H 1.08997 * 110.64413 * 187.68834 * 15 2 1 17 17 C 1.54599 * 110.72120 * 64.53624 * 15 2 1 18 18 C 1.53995 * 105.13834 * 219.68459 * 17 15 2 19 19 N 1.47902 * 107.05717 * 358.77609 * 18 17 15 20 20 C 1.48527 * 105.82252 * 25.33012 * 19 18 17 21 21 H 1.08991 * 109.47342 * 67.56889 * 1 2 3 22 22 H 1.09002 * 109.46864 * 187.57304 * 1 2 3 23 23 H 1.09001 * 109.47146 * 307.56899 * 1 2 3 24 24 H 1.08999 * 109.47226 * 79.67591 * 3 2 1 25 25 H 1.09003 * 109.46727 * 319.67526 * 3 2 1 26 26 H 1.09000 * 109.46940 * 304.57855 * 4 3 2 27 27 H 1.08999 * 109.47319 * 184.58000 * 4 3 2 28 28 H 1.09005 * 109.47090 * 300.00122 * 6 5 4 29 29 H 1.09003 * 109.47041 * 60.00165 * 6 5 4 30 30 H 0.97000 * 119.99854 * 180.02562 * 10 9 7 31 31 H 1.09007 * 110.30800 * 338.59799 * 17 15 2 32 32 H 1.08997 * 110.30640 * 100.66702 * 17 15 2 33 33 H 1.08996 * 109.91481 * 118.12836 * 18 17 15 34 34 H 1.09003 * 109.91434 * 239.42306 * 18 17 15 35 35 H 1.00904 * 110.99547 * 264.81713 * 19 18 17 36 36 H 1.08998 * 110.66843 * 202.35914 * 20 19 18 37 37 H 1.09003 * 110.66797 * 79.22679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4462 1.3609 -0.4858 5 8 3.4894 0.9303 -1.8477 6 6 4.8061 0.8841 -2.4012 7 6 4.7329 0.4204 -3.8332 8 1 3.7768 0.1841 -4.2762 9 6 5.8870 0.2967 -4.5775 10 7 5.8233 -0.1085 -5.8271 11 14 7.5410 0.7047 -3.8111 12 1 8.1104 -0.5150 -3.1841 13 1 8.4657 1.1983 -4.8630 14 1 7.3617 1.7552 -2.7770 15 6 1.9955 -0.7659 1.1377 16 1 3.0769 -0.6507 1.2110 17 6 1.6111 -2.2585 1.0171 18 6 1.2570 -2.6995 2.4494 19 7 1.4621 -1.5272 3.3276 20 6 1.3038 -0.3354 2.4556 21 1 -0.3633 0.3921 -0.9498 22 1 -0.3633 -1.0187 0.1354 23 1 -0.3633 0.6266 0.8146 24 1 1.9537 1.7767 1.0110 25 1 1.3942 1.9914 -0.6651 26 1 4.0306 0.6772 0.1301 27 1 3.8625 2.3653 -0.4089 28 1 5.2510 1.8786 -2.3639 29 1 5.4183 0.1903 -1.8250 30 1 6.6352 -0.1959 -6.3506 31 1 0.7484 -2.3752 0.3611 32 1 2.4541 -2.8368 0.6391 33 1 0.2156 -3.0183 2.4929 34 1 1.9110 -3.5146 2.7593 35 1 2.3785 -1.5475 3.7495 36 1 1.8070 0.5285 2.8897 37 1 0.2488 -0.1214 2.2843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385251092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = -29.679019 kcal Electronic energy + Delta-G solvation = -16349.106101 eV Core-core repulsion = 13740.824005 eV Total energy + Delta-G solvation = -2608.282097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.62178 -36.99717 -35.37882 -32.60196 -30.20314 -29.32674 -28.19558 -27.51864 -24.73807 -22.44830 -21.77826 -21.26345 -19.41223 -16.99553 -16.82504 -16.23213 -15.61286 -15.39170 -14.56534 -14.28838 -14.13001 -13.74290 -13.37434 -12.97012 -12.67651 -12.60351 -12.11214 -11.88923 -11.82657 -11.57260 -11.20959 -10.98320 -10.93117 -10.70290 -10.65505 -10.31206 -9.83034 -9.14864 -9.11145 -8.79025 -8.40784 -7.91004 -6.08249 -4.06394 3.25779 3.32578 3.34144 3.77858 4.28074 4.37875 4.61451 4.65449 4.83302 4.89719 5.14154 5.22777 5.23049 5.29692 5.37877 5.45389 5.55906 5.66827 5.74721 5.80615 5.83167 5.89543 5.93939 6.13827 6.15472 6.16439 6.50067 6.64031 7.03838 7.10110 7.19278 7.21175 7.64275 8.09818 8.73050 9.05124 9.51653 11.05015 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.036630 B = 0.005544 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.222038 B = 5049.218765 C = 5168.472368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.516 5.516 3 C 0.060 3.940 4 C 0.065 3.935 5 O -0.364 6.364 6 C 0.168 3.832 7 C -0.514 4.514 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.875 3.125 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.050 3.950 16 H 0.088 0.912 17 C -0.147 4.147 18 C 0.041 3.959 19 N -0.673 5.673 20 C 0.005 3.995 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.025 0.975 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.034 0.966 27 H 0.040 0.960 28 H -0.001 1.001 29 H -0.005 1.005 30 H 0.266 0.734 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.336 0.664 36 H 0.071 0.929 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -0.576 17.500 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.238 5.238 3 C -0.068 4.068 4 C -0.014 4.014 5 O -0.283 6.283 6 C 0.093 3.907 7 C -0.552 4.552 8 H 0.101 0.899 9 C -0.130 4.130 10 N -0.536 5.536 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.208 1.208 14 H -0.192 1.192 15 C -0.061 4.061 16 H 0.106 0.894 17 C -0.186 4.186 18 C -0.089 4.089 19 N -0.300 5.300 20 C -0.127 4.127 21 H 0.089 0.911 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.100 0.900 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.089 0.911 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.530 -0.885 17.096 19.127 hybrid contribution 1.859 0.620 0.582 2.044 sum -6.671 -0.264 17.678 18.897 Atomic orbital electron populations 1.22462 0.87742 1.01563 1.00863 1.61907 1.07279 1.13638 1.41002 1.22148 0.96427 0.89287 0.98933 1.22305 0.95003 0.97319 0.86725 1.88005 1.30053 1.87631 1.22579 1.20574 0.80797 0.94501 0.94860 1.20902 0.96058 1.44629 0.93647 0.89926 1.24768 0.98695 0.94817 0.94724 1.69879 1.28681 1.47000 1.07992 0.86860 0.84264 0.79261 0.79401 1.20017 1.20803 1.19194 1.23378 0.99803 0.94000 0.88891 0.89416 1.22834 1.02909 0.95299 0.97585 1.22760 1.01872 0.93480 0.90782 1.62718 1.35159 1.02150 1.29987 1.23881 1.02113 0.93737 0.92930 0.91061 0.91331 0.95700 0.93908 0.89958 0.94806 0.94242 0.98287 0.98719 0.92437 0.90128 0.90777 0.90742 0.91540 0.84906 0.91092 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.39 60.06 0.50 0.76 16 2 N -0.52 -7.53 4.63 -232.64 -1.08 -8.61 16 3 C 0.06 0.86 5.28 -3.82 -0.02 0.84 16 4 C 0.06 1.15 6.13 37.16 0.23 1.38 16 5 O -0.36 -8.70 10.27 -35.23 -0.36 -9.07 16 6 C 0.17 4.38 4.76 36.01 0.17 4.55 16 7 C -0.51 -15.64 9.99 -34.44 -0.34 -15.98 16 8 H 0.08 2.76 8.06 -52.49 -0.42 2.33 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 10 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 11 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 15 C 0.05 0.63 2.99 -65.85 -0.20 0.44 16 16 H 0.09 1.20 6.63 -51.93 -0.34 0.86 16 17 C -0.15 -1.73 6.37 -25.37 -0.16 -1.90 16 18 C 0.04 0.40 7.52 -2.75 -0.02 0.38 16 19 N -0.67 -6.85 7.51 -110.09 -0.83 -7.68 16 20 C 0.00 0.05 6.19 -1.90 -0.01 0.04 16 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.77 6.03 -51.93 -0.31 0.46 16 23 H 0.02 0.26 6.54 -51.93 -0.34 -0.08 16 24 H 0.04 0.51 7.17 -51.93 -0.37 0.13 16 25 H 0.08 1.20 7.94 -51.93 -0.41 0.79 16 26 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 29 H 0.00 -0.12 7.57 -51.93 -0.39 -0.52 16 30 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.08 0.98 6.11 -51.93 -0.32 0.66 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.34 3.00 8.92 -39.29 -0.35 2.65 16 36 H 0.07 0.71 7.84 -51.93 -0.41 0.30 16 37 H 0.09 0.94 5.68 -51.93 -0.30 0.64 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -32.55 289.10 -7.73 -40.28 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.97 Total: -1.60 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 0.05 Total: -7.44 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -1.13 Total: -43.58 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.36 Total: -9.07 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.55 -7.73 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.600 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds