Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99953 * 2 1 4 4 C 1.52996 * 109.47114 * 199.68053 * 3 2 1 5 5 O 1.42900 * 109.47386 * 64.58000 * 4 3 2 6 6 C 1.42900 * 114.00125 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46938 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00569 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99693 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99852 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00031 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47474 * 90.00050 * 11 9 7 13 13 H 1.48503 * 109.46873 * 210.00254 * 11 9 7 14 14 H 1.48497 * 109.47100 * 329.99958 * 11 9 7 15 15 C 1.46907 * 111.00039 * 123.94704 * 2 1 3 16 16 H 1.08997 * 110.64413 * 187.68834 * 15 2 1 17 17 C 1.54599 * 110.72120 * 64.53624 * 15 2 1 18 18 C 1.53995 * 105.13834 * 219.68459 * 17 15 2 19 19 N 1.47902 * 107.05717 * 358.77609 * 18 17 15 20 20 C 1.48527 * 105.82252 * 25.33012 * 19 18 17 21 21 H 1.08991 * 109.47342 * 67.56889 * 1 2 3 22 22 H 1.09002 * 109.46864 * 187.57304 * 1 2 3 23 23 H 1.09001 * 109.47146 * 307.56899 * 1 2 3 24 24 H 1.08999 * 109.47226 * 79.67591 * 3 2 1 25 25 H 1.09003 * 109.46727 * 319.67526 * 3 2 1 26 26 H 1.09000 * 109.46940 * 304.57855 * 4 3 2 27 27 H 1.08999 * 109.47319 * 184.58000 * 4 3 2 28 28 H 1.09005 * 109.47090 * 300.00122 * 6 5 4 29 29 H 1.09003 * 109.47041 * 60.00165 * 6 5 4 30 30 H 0.97000 * 119.99854 * 180.02562 * 10 9 7 31 31 H 1.09007 * 110.30800 * 338.59799 * 17 15 2 32 32 H 1.08997 * 110.30640 * 100.66702 * 17 15 2 33 33 H 1.08996 * 109.91481 * 118.12836 * 18 17 15 34 34 H 1.09003 * 109.91434 * 239.42306 * 18 17 15 35 35 H 1.00904 * 110.99547 * 264.81713 * 19 18 17 36 36 H 1.08998 * 110.66843 * 202.35914 * 20 19 18 37 37 H 1.09003 * 110.66797 * 79.22679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.4462 1.3609 -0.4858 5 8 3.4894 0.9303 -1.8477 6 6 4.8061 0.8841 -2.4012 7 6 4.7329 0.4204 -3.8332 8 1 3.7768 0.1841 -4.2762 9 6 5.8870 0.2967 -4.5775 10 7 5.8233 -0.1085 -5.8271 11 14 7.5410 0.7047 -3.8111 12 1 8.1104 -0.5150 -3.1841 13 1 8.4657 1.1983 -4.8630 14 1 7.3617 1.7552 -2.7770 15 6 1.9955 -0.7659 1.1377 16 1 3.0769 -0.6507 1.2110 17 6 1.6111 -2.2585 1.0171 18 6 1.2570 -2.6995 2.4494 19 7 1.4621 -1.5272 3.3276 20 6 1.3038 -0.3354 2.4556 21 1 -0.3633 0.3921 -0.9498 22 1 -0.3633 -1.0187 0.1354 23 1 -0.3633 0.6266 0.8146 24 1 1.9537 1.7767 1.0110 25 1 1.3942 1.9914 -0.6651 26 1 4.0306 0.6772 0.1301 27 1 3.8625 2.3653 -0.4089 28 1 5.2510 1.8786 -2.3639 29 1 5.4183 0.1903 -1.8250 30 1 6.6352 -0.1959 -6.3506 31 1 0.7484 -2.3752 0.3611 32 1 2.4541 -2.8368 0.6391 33 1 0.2156 -3.0183 2.4929 34 1 1.9110 -3.5146 2.7593 35 1 2.3785 -1.5475 3.7495 36 1 1.8070 0.5285 2.8897 37 1 0.2488 -0.1214 2.2843 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385251092.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = -56.272425 kcal Electronic energy + Delta-G solvation = -16350.259278 eV Core-core repulsion = 13740.824005 eV Total energy + Delta-G solvation = -2609.435273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.58826 -38.59859 -36.52915 -34.83668 -31.55001 -30.40133 -29.41114 -29.08651 -25.84161 -23.97638 -23.48923 -22.21965 -20.43200 -19.03999 -17.86584 -17.57159 -16.97797 -16.86600 -16.21406 -15.71811 -15.36075 -14.79508 -14.73295 -14.53065 -13.92077 -13.70891 -13.61520 -13.32629 -12.99449 -12.77416 -12.61025 -12.44700 -12.13348 -12.05786 -11.86115 -11.82598 -11.47784 -11.26054 -10.92440 -10.29647 -9.98131 -8.88717 -8.37521 -6.45086 1.31480 1.34948 1.45881 2.28667 2.81086 2.94856 3.15056 3.42083 3.71095 3.88323 4.02837 4.14173 4.22862 4.30700 4.40134 4.43500 4.52475 4.60565 4.61719 4.64261 4.69424 4.86406 4.91044 4.95327 5.01092 5.02666 5.18808 5.22197 5.44449 5.67318 5.94477 6.16123 6.20922 6.39183 6.59307 6.81247 7.19712 8.79956 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.036630 B = 0.005544 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.222038 B = 5049.218765 C = 5168.472368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.066 3.934 4 C 0.055 3.945 5 O -0.393 6.393 6 C 0.180 3.820 7 C -0.543 4.543 8 H 0.027 0.973 9 C 0.012 3.988 10 N -0.943 5.943 11 Si 0.956 3.044 12 H -0.260 1.260 13 H -0.272 1.272 14 H -0.246 1.246 15 C 0.049 3.951 16 H 0.075 0.925 17 C -0.148 4.148 18 C 0.048 3.952 19 N -0.675 5.675 20 C 0.015 3.985 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.010 0.990 29 H 0.004 0.996 30 H 0.273 0.727 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.344 0.656 36 H 0.082 0.918 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.961 0.127 20.103 21.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.271 5.271 3 C -0.062 4.062 4 C -0.022 4.022 5 O -0.312 6.312 6 C 0.104 3.896 7 C -0.581 4.581 8 H 0.046 0.954 9 C -0.185 4.185 10 N -0.583 5.583 11 Si 0.777 3.223 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.169 1.169 15 C -0.061 4.061 16 H 0.093 0.907 17 C -0.187 4.187 18 C -0.082 4.082 19 N -0.302 5.302 20 C -0.116 4.116 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.064 0.936 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.028 0.972 29 H 0.022 0.978 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.160 0.840 36 H 0.100 0.900 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.557 -0.182 19.723 21.122 hybrid contribution 1.436 0.359 -0.269 1.505 sum -6.121 0.177 19.454 20.395 Atomic orbital electron populations 1.22427 0.86449 1.02261 1.01072 1.61835 1.08727 1.13951 1.42637 1.22098 0.94147 0.89577 1.00378 1.22684 0.97728 0.98145 0.83646 1.87959 1.28874 1.88281 1.26112 1.20267 0.82175 0.94755 0.92377 1.21166 0.94384 1.46086 0.96482 0.95417 1.25854 1.03689 0.93923 0.95061 1.70038 1.30564 1.47775 1.09896 0.85597 0.77553 0.80045 0.79057 1.18513 1.19651 1.16911 1.23369 0.99182 0.94143 0.89451 0.90674 1.22831 1.02027 0.95002 0.98860 1.22719 1.02425 0.93752 0.89290 1.62724 1.35835 1.01981 1.29696 1.23776 1.01894 0.94237 0.91681 0.92155 0.90875 0.93646 0.90496 0.90538 0.94059 0.92541 0.97200 0.97786 0.91806 0.90898 0.92119 0.90306 0.90269 0.84013 0.89995 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 8.39 127.69 1.07 1.66 16 2 N -0.55 -15.53 4.63 -889.95 -4.12 -19.66 16 3 C 0.07 1.79 5.28 86.30 0.46 2.25 16 4 C 0.06 1.88 6.13 71.98 0.44 2.32 16 5 O -0.39 -18.88 10.27 -148.98 -1.53 -20.41 16 6 C 0.18 9.32 4.76 71.24 0.34 9.66 16 7 C -0.54 -34.06 9.99 25.60 0.26 -33.81 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.75 5.47 84.66 0.46 1.21 16 10 N -0.94 -60.40 13.96 21.45 0.30 -60.10 16 11 Si 0.96 44.06 27.47 68.60 1.88 45.95 16 12 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 15 C 0.05 1.17 2.99 46.12 0.14 1.31 16 16 H 0.08 1.97 6.63 -2.39 -0.02 1.95 16 17 C -0.15 -3.38 6.37 31.47 0.20 -3.18 16 18 C 0.05 0.86 7.52 86.45 0.65 1.51 16 19 N -0.68 -12.04 7.51 -502.21 -3.77 -15.82 16 20 C 0.02 0.29 6.19 86.65 0.54 0.82 16 21 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.07 1.60 6.03 -2.39 -0.01 1.58 16 23 H 0.05 0.86 6.54 -2.39 -0.02 0.84 16 24 H 0.08 1.58 7.17 -2.39 -0.02 1.56 16 25 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 26 H 0.04 1.34 6.70 -2.39 -0.02 1.33 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.01 0.51 7.20 -2.38 -0.02 0.49 16 29 H 0.00 0.22 7.57 -2.39 -0.02 0.20 16 30 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 31 H 0.07 1.76 6.11 -2.38 -0.01 1.75 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.34 5.26 8.92 -89.69 -0.80 4.46 16 36 H 0.08 1.36 7.84 -2.39 -0.02 1.34 16 37 H 0.09 1.64 5.68 -2.39 -0.01 1.62 16 Total: -1.00 -71.87 289.10 -2.50 -74.36 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.19 Total: 11.92 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 4.55 Total: -16.25 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -7.60 Total: -95.58 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.53 Total: -20.41 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.88 Total: 45.95 kcal Total: -71.87 -2.50 -74.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385251092.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.092 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds