Wall clock time and date at job start Mon Mar 30 2020 02:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48536 * 110.99557 * 2 1 4 4 C 1.55106 * 103.28292 * 200.32949 * 3 2 1 5 5 C 1.54603 * 102.84275 * 37.30239 * 4 3 2 6 6 H 1.08997 * 110.30507 * 97.12062 * 5 4 3 7 7 N 1.46895 * 110.30478 * 219.18459 * 5 4 3 8 8 C 1.46909 * 110.99620 * 203.61153 * 7 5 4 9 9 C 1.53005 * 109.46762 * 180.02562 * 8 7 5 10 10 O 1.42890 * 109.47252 * 65.00085 * 9 8 7 11 11 C 1.42901 * 114.00075 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47307 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47903 * 111.00395 * 242.59910 * 2 1 3 21 21 H 1.09003 * 109.46862 * 177.39774 * 1 2 3 22 22 H 1.08994 * 109.47518 * 297.39921 * 1 2 3 23 23 H 1.09003 * 109.47283 * 57.40610 * 1 2 3 24 24 H 1.09005 * 110.66574 * 318.70648 * 3 2 1 25 25 H 1.08990 * 110.66958 * 81.67479 * 3 2 1 26 26 H 1.08994 * 110.70613 * 278.99979 * 4 3 2 27 27 H 1.09000 * 110.80880 * 155.65605 * 4 3 2 28 28 H 1.00900 * 110.99964 * 79.66654 * 7 5 4 29 29 H 1.09000 * 109.46736 * 60.00733 * 8 7 5 30 30 H 1.08997 * 109.47385 * 299.99952 * 8 7 5 31 31 H 1.09005 * 109.46902 * 304.99649 * 9 8 7 32 32 H 1.09005 * 109.46778 * 185.00299 * 9 8 7 33 33 H 1.09005 * 109.47211 * 60.00193 * 11 10 9 34 34 H 1.08998 * 109.47189 * 300.00217 * 11 10 9 35 35 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.91206 * 26.48989 * 20 2 1 37 37 H 1.08992 * 109.91402 * 265.19445 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2123 -0.5245 5 6 3.2983 0.1053 -1.5929 6 1 3.2143 0.5470 -2.5859 7 7 4.4422 -0.8148 -1.5402 8 6 4.6267 -1.4995 -2.8267 9 6 5.8241 -2.4474 -2.7327 10 8 5.5387 -3.4833 -1.7907 11 6 6.5982 -4.4282 -1.6272 12 6 6.1908 -5.4699 -0.6173 13 1 5.2198 -5.4160 -0.1476 14 6 7.0578 -6.4918 -0.2929 15 7 8.2400 -6.5577 -0.8652 16 14 6.5526 -7.7834 0.9584 17 1 5.1837 -7.4861 1.4516 18 1 7.5037 -7.7665 2.0988 19 1 6.5689 -9.1241 0.3201 20 6 1.9991 -0.6354 -1.2258 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3634 0.4729 0.9123 23 1 -0.3634 0.5536 -0.8658 24 1 1.4236 2.0205 -0.6731 25 1 2.0012 1.7988 1.0090 26 1 4.1136 0.8864 0.2768 27 1 3.8130 2.1361 -0.9751 28 1 4.3370 -1.4797 -0.7886 29 1 4.8076 -0.7616 -3.6083 30 1 3.7297 -2.0705 -3.0665 31 1 6.7030 -1.8914 -2.4063 32 1 6.0159 -2.8885 -3.7109 33 1 7.4934 -3.9136 -1.2780 34 1 6.8057 -4.9104 -2.5825 35 1 8.5022 -5.8872 -1.5153 36 1 1.2759 -0.5404 -2.0358 37 1 2.2123 -1.6874 -1.0363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385366793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:38 Heat of formation + Delta-G solvation = -49.031481 kcal Electronic energy + Delta-G solvation = -15927.868868 eV Core-core repulsion = 13318.747585 eV Total energy + Delta-G solvation = -2609.121282 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.28060 -37.11444 -35.02879 -32.95863 -31.43183 -29.15157 -27.29881 -26.14914 -24.97178 -22.51779 -21.69615 -21.07583 -20.57285 -17.01592 -16.41286 -15.99726 -15.67837 -15.13923 -14.70185 -14.21926 -13.96432 -13.75063 -13.37502 -13.10193 -12.66735 -12.25267 -12.14966 -11.86903 -11.64642 -11.49244 -11.43882 -11.17983 -10.98193 -10.78793 -10.66866 -10.19451 -10.10304 -8.84881 -8.61295 -8.58661 -8.24392 -8.22689 -6.45032 -4.13513 3.44340 3.48691 3.63798 3.88165 4.22782 4.45319 4.62175 4.65048 4.83659 5.01991 5.11881 5.22726 5.25398 5.33182 5.36002 5.45848 5.49521 5.63311 5.65403 5.70568 5.77608 5.94187 5.99510 6.11815 6.14120 6.26697 6.69477 6.78347 6.85291 7.14705 7.22195 7.61921 7.90437 8.19484 8.65578 8.82400 9.57236 10.95455 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.005056 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.857199 B = 5536.884147 C = 6147.880365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.519 5.519 3 C 0.032 3.968 4 C -0.112 4.112 5 C 0.078 3.922 6 H 0.078 0.922 7 N -0.677 5.677 8 C 0.065 3.935 9 C 0.059 3.941 10 O -0.390 6.390 11 C 0.188 3.812 12 C -0.595 4.595 13 H 0.061 0.939 14 C 0.017 3.983 15 N -0.913 5.913 16 Si 1.084 2.916 17 H -0.287 1.287 18 H -0.285 1.285 19 H -0.286 1.286 20 C 0.005 3.995 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.025 0.975 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.361 0.639 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.040 0.960 33 H -0.004 1.004 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.042 0.958 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 15.274 -1.878 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.243 5.243 3 C -0.096 4.096 4 C -0.151 4.151 5 C -0.033 4.033 6 H 0.096 0.904 7 N -0.310 5.310 8 C -0.064 4.064 9 C -0.019 4.019 10 O -0.309 6.309 11 C 0.113 3.887 12 C -0.634 4.634 13 H 0.079 0.921 14 C -0.186 4.186 15 N -0.549 5.549 16 Si 0.911 3.089 17 H -0.213 1.213 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.124 4.124 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.182 0.818 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.014 0.986 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.381 14.069 -0.676 18.109 hybrid contribution -1.334 1.228 -1.826 2.574 sum -12.715 15.298 -2.503 20.049 Atomic orbital electron populations 1.22517 0.88083 1.02058 1.00598 1.64704 1.07886 1.14925 1.36801 1.23320 0.95472 0.89775 1.01064 1.22548 0.95843 0.97866 0.98802 1.22440 0.88160 0.93812 0.98929 0.90358 1.60593 1.40430 1.23530 1.06450 1.21982 0.97486 0.95128 0.91835 1.22346 0.96766 0.89700 0.93069 1.87821 1.43457 1.38764 1.60891 1.20271 0.85780 0.86878 0.95746 1.21955 1.04857 1.10988 1.25566 0.92102 1.25928 0.93478 0.99228 1.00001 1.70740 1.20112 1.36942 1.27098 0.83340 0.75237 0.75033 0.75261 1.21271 1.21131 1.21208 1.23764 0.97265 1.00449 0.90965 0.91312 0.91304 0.95674 0.94068 0.89966 0.89641 0.90936 0.81781 0.90689 0.94748 0.93521 0.94191 0.98592 0.98864 0.92244 0.93940 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.40 60.06 0.56 0.72 16 2 N -0.52 -6.28 5.55 -238.61 -1.33 -7.61 16 3 C 0.03 0.32 6.56 -1.80 -0.01 0.31 16 4 C -0.11 -1.24 6.79 -24.77 -0.17 -1.41 16 5 C 0.08 0.96 3.30 -66.36 -0.22 0.74 16 6 H 0.08 0.88 7.84 -51.93 -0.41 0.47 16 7 N -0.68 -10.25 6.23 -105.29 -0.66 -10.90 16 8 C 0.06 0.99 5.95 -3.82 -0.02 0.96 16 9 C 0.06 1.11 6.28 37.16 0.23 1.34 16 10 O -0.39 -9.47 9.84 -35.23 -0.35 -9.82 16 11 C 0.19 5.20 5.00 36.01 0.18 5.38 16 12 C -0.60 -17.95 9.43 -34.44 -0.32 -18.28 16 13 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 15 N -0.91 -28.33 13.65 55.43 0.76 -27.57 16 16 Si 1.08 25.91 29.90 -169.99 -5.08 20.83 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.01 0.07 6.34 -2.76 -0.02 0.05 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.02 0.22 8.00 -51.93 -0.42 -0.19 16 24 H 0.04 0.38 7.96 -51.93 -0.41 -0.04 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.36 6.29 7.75 -39.29 -0.30 5.99 16 29 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.00 -0.10 8.01 -51.93 -0.42 -0.52 16 34 H -0.01 -0.18 8.01 -51.93 -0.42 -0.59 16 35 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 36 H 0.04 0.49 7.73 -51.93 -0.40 0.09 16 37 H 0.08 1.24 7.60 -51.93 -0.39 0.84 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -31.86 302.07 -8.45 -40.32 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.47 Total: -0.03 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 0.12 Total: -9.77 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -1.22 Total: -46.08 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.35 Total: -9.82 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.86 -8.45 -40.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.715 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds