Wall clock time and date at job start Mon Mar 30 2020 02:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48536 * 110.99557 * 2 1 4 4 C 1.55106 * 103.28292 * 200.32949 * 3 2 1 5 5 C 1.54603 * 102.84275 * 37.30239 * 4 3 2 6 6 H 1.08997 * 110.30507 * 97.12062 * 5 4 3 7 7 N 1.46895 * 110.30478 * 219.18459 * 5 4 3 8 8 C 1.46909 * 110.99620 * 203.61153 * 7 5 4 9 9 C 1.53005 * 109.46762 * 180.02562 * 8 7 5 10 10 O 1.42890 * 109.47252 * 65.00085 * 9 8 7 11 11 C 1.42901 * 114.00075 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47307 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99603 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.47903 * 111.00395 * 242.59910 * 2 1 3 21 21 H 1.09003 * 109.46862 * 177.39774 * 1 2 3 22 22 H 1.08994 * 109.47518 * 297.39921 * 1 2 3 23 23 H 1.09003 * 109.47283 * 57.40610 * 1 2 3 24 24 H 1.09005 * 110.66574 * 318.70648 * 3 2 1 25 25 H 1.08990 * 110.66958 * 81.67479 * 3 2 1 26 26 H 1.08994 * 110.70613 * 278.99979 * 4 3 2 27 27 H 1.09000 * 110.80880 * 155.65605 * 4 3 2 28 28 H 1.00900 * 110.99964 * 79.66654 * 7 5 4 29 29 H 1.09000 * 109.46736 * 60.00733 * 8 7 5 30 30 H 1.08997 * 109.47385 * 299.99952 * 8 7 5 31 31 H 1.09005 * 109.46902 * 304.99649 * 9 8 7 32 32 H 1.09005 * 109.46778 * 185.00299 * 9 8 7 33 33 H 1.09005 * 109.47211 * 60.00193 * 11 10 9 34 34 H 1.08998 * 109.47189 * 300.00217 * 11 10 9 35 35 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.91206 * 26.48989 * 20 2 1 37 37 H 1.08992 * 109.91402 * 265.19445 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4504 1.2123 -0.5245 5 6 3.2983 0.1053 -1.5929 6 1 3.2143 0.5470 -2.5859 7 7 4.4422 -0.8148 -1.5402 8 6 4.6267 -1.4995 -2.8267 9 6 5.8241 -2.4474 -2.7327 10 8 5.5387 -3.4833 -1.7907 11 6 6.5982 -4.4282 -1.6272 12 6 6.1908 -5.4699 -0.6173 13 1 5.2198 -5.4160 -0.1476 14 6 7.0578 -6.4918 -0.2929 15 7 8.2400 -6.5577 -0.8652 16 14 6.5526 -7.7834 0.9584 17 1 5.1837 -7.4861 1.4516 18 1 7.5037 -7.7665 2.0988 19 1 6.5689 -9.1241 0.3201 20 6 1.9991 -0.6354 -1.2258 21 1 -0.3633 -1.0266 -0.0467 22 1 -0.3634 0.4729 0.9123 23 1 -0.3634 0.5536 -0.8658 24 1 1.4236 2.0205 -0.6731 25 1 2.0012 1.7988 1.0090 26 1 4.1136 0.8864 0.2768 27 1 3.8130 2.1361 -0.9751 28 1 4.3370 -1.4797 -0.7886 29 1 4.8076 -0.7616 -3.6083 30 1 3.7297 -2.0705 -3.0665 31 1 6.7030 -1.8914 -2.4063 32 1 6.0159 -2.8885 -3.7109 33 1 7.4934 -3.9136 -1.2780 34 1 6.8057 -4.9104 -2.5825 35 1 8.5022 -5.8872 -1.5153 36 1 1.2759 -0.5404 -2.0358 37 1 2.2123 -1.6874 -1.0363 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385366793.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:37 Heat of formation + Delta-G solvation = -73.498969 kcal Electronic energy + Delta-G solvation = -15928.929857 eV Core-core repulsion = 13318.747585 eV Total energy + Delta-G solvation = -2610.182272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.24230 -38.86785 -36.33482 -35.12173 -32.49712 -30.36458 -28.83725 -27.79799 -25.93624 -24.76390 -22.99416 -22.03052 -21.55012 -19.21987 -17.55491 -17.49109 -17.03898 -16.52201 -15.88647 -15.69601 -15.33513 -15.14595 -14.97696 -14.45459 -13.98733 -13.63703 -13.43715 -13.17478 -12.98110 -12.69760 -12.63897 -12.52307 -12.46116 -12.15166 -11.92796 -11.84329 -11.63102 -10.87718 -10.84373 -10.36733 -9.44502 -9.40412 -8.84460 -6.55293 1.52058 1.61973 1.81184 2.48444 3.01279 3.02870 3.04471 3.14169 3.68453 3.78396 4.04072 4.16893 4.27457 4.29719 4.37740 4.41526 4.46191 4.51292 4.53119 4.61244 4.73306 4.79939 4.83037 4.88895 4.93599 4.96094 5.10206 5.23326 5.66064 5.81309 5.91513 6.03632 6.12691 6.29883 6.32737 6.63960 7.25556 8.56913 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030235 B = 0.005056 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.857199 B = 5536.884147 C = 6147.880365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.544 5.544 3 C 0.036 3.964 4 C -0.109 4.109 5 C 0.078 3.922 6 H 0.097 0.903 7 N -0.686 5.686 8 C 0.075 3.925 9 C 0.051 3.949 10 O -0.403 6.403 11 C 0.198 3.802 12 C -0.623 4.623 13 H 0.052 0.948 14 C -0.028 4.028 15 N -0.929 5.929 16 Si 1.132 2.868 17 H -0.273 1.273 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.010 3.990 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.059 0.941 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.344 0.656 29 H 0.109 0.891 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.050 0.950 33 H -0.018 1.018 34 H -0.017 1.017 35 H 0.256 0.744 36 H 0.054 0.946 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.527 16.169 -1.827 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.269 5.269 3 C -0.091 4.091 4 C -0.148 4.148 5 C -0.033 4.033 6 H 0.115 0.885 7 N -0.317 5.317 8 C -0.054 4.054 9 C -0.026 4.026 10 O -0.323 6.323 11 C 0.123 3.877 12 C -0.660 4.660 13 H 0.070 0.930 14 C -0.226 4.226 15 N -0.565 5.565 16 Si 0.952 3.048 17 H -0.198 1.198 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.120 4.120 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.162 0.838 29 H 0.127 0.873 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.069 0.931 33 H -0.001 1.001 34 H 0.000 1.000 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.569 15.012 -0.656 19.590 hybrid contribution -0.979 1.051 -1.894 2.377 sum -13.549 16.063 -2.550 21.168 Atomic orbital electron populations 1.22543 0.86823 1.02101 1.01722 1.64664 1.09306 1.16203 1.36687 1.23338 0.94805 0.89057 1.01920 1.22537 0.96245 0.98100 0.97903 1.22561 0.86982 0.93411 1.00344 0.88505 1.60656 1.42136 1.23169 1.05712 1.21971 0.95557 0.95064 0.92858 1.22685 0.98748 0.88952 0.92245 1.87785 1.42336 1.39462 1.62671 1.19942 0.86065 0.87151 0.94582 1.22298 1.04831 1.12330 1.26542 0.92968 1.27593 0.92690 1.01196 1.01080 1.70867 1.21083 1.36950 1.27628 0.82758 0.75858 0.72912 0.73303 1.19779 1.19664 1.19609 1.23618 0.97776 0.98912 0.91665 0.91889 0.90188 0.94454 0.92296 0.89276 0.91656 0.89006 0.83763 0.87312 0.94949 0.93725 0.93134 1.00073 0.99982 0.93460 0.92776 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 127.69 1.20 1.50 16 2 N -0.54 -12.48 5.55 -908.82 -5.05 -17.53 16 3 C 0.04 0.66 6.56 86.71 0.57 1.23 16 4 C -0.11 -2.23 6.79 31.86 0.22 -2.01 16 5 C 0.08 1.79 3.30 45.80 0.15 1.94 16 6 H 0.10 1.88 7.84 -2.39 -0.02 1.86 16 7 N -0.69 -20.33 6.23 -487.02 -3.04 -23.36 16 8 C 0.07 2.17 5.95 86.30 0.51 2.68 16 9 C 0.05 1.90 6.28 71.98 0.45 2.35 16 10 O -0.40 -19.97 9.84 -148.98 -1.47 -21.44 16 11 C 0.20 11.27 5.00 71.24 0.36 11.63 16 12 C -0.62 -38.17 9.43 25.60 0.24 -37.93 16 13 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 14 C -0.03 -1.67 5.46 84.65 0.46 -1.21 16 15 N -0.93 -58.10 13.65 21.45 0.29 -57.81 16 16 Si 1.13 51.36 29.90 68.60 2.05 53.42 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.01 0.25 6.34 86.44 0.55 0.79 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 0.58 8.00 -2.39 -0.02 0.56 16 24 H 0.06 0.88 7.96 -2.38 -0.02 0.87 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.34 12.23 7.75 -89.69 -0.69 11.53 16 29 H 0.11 2.46 8.07 -2.39 -0.02 2.44 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H -0.02 -1.08 8.01 -2.38 -0.02 -1.10 16 34 H -0.02 -1.01 8.01 -2.39 -0.02 -1.03 16 35 H 0.26 16.18 7.22 -92.71 -0.67 15.51 16 36 H 0.05 1.15 7.73 -2.39 -0.02 1.13 16 37 H 0.06 1.65 7.60 -2.39 -0.02 1.63 16 Total: -1.00 -68.58 302.07 -2.07 -70.65 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.43 Total: 15.10 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: 4.71 Total: -19.03 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -7.79 Total: -98.69 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -1.47 Total: -21.44 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.42 kcal Total: -68.58 -2.07 -70.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385366793.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.852 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds