Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99725 * 2 1 4 4 C 1.46897 * 111.00209 * 123.95774 * 2 1 3 5 5 C 1.53939 * 113.73254 * 164.85675 * 4 2 1 6 6 N 1.48187 * 86.09884 * 221.95455 * 5 4 2 7 7 C 1.46906 * 111.07134 * 137.51875 * 6 5 4 8 8 C 1.53003 * 109.46857 * 90.56517 * 7 6 5 9 9 O 1.42900 * 109.47176 * 65.00289 * 8 7 6 10 10 C 1.42898 * 114.00059 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47081 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00282 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47156 * 60.00485 * 15 13 11 17 17 H 1.48503 * 109.47162 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46892 * 300.00234 * 15 13 11 19 19 C 1.47957 * 90.80000 * 24.60288 * 6 5 4 20 20 H 1.08997 * 109.47265 * 59.99802 * 1 2 3 21 21 H 1.08993 * 109.46711 * 299.99435 * 1 2 3 22 22 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46841 * 59.74779 * 3 2 1 24 24 H 1.09001 * 109.46625 * 179.74455 * 3 2 1 25 25 H 1.08998 * 109.47215 * 299.74366 * 3 2 1 26 26 H 1.08998 * 112.93825 * 296.41819 * 4 2 1 27 27 H 1.08997 * 113.75994 * 336.23454 * 5 4 2 28 28 H 1.09003 * 113.75772 * 107.59890 * 5 4 2 29 29 H 1.08994 * 109.47205 * 210.56594 * 7 6 5 30 30 H 1.09008 * 109.46986 * 330.57065 * 7 6 5 31 31 H 1.09000 * 109.47364 * 185.00254 * 8 7 6 32 32 H 1.09002 * 109.47236 * 305.00045 * 8 7 6 33 33 H 1.08998 * 109.46713 * 299.99764 * 10 9 8 34 34 H 1.08995 * 109.47379 * 59.99821 * 10 9 8 35 35 H 0.96995 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.09002 * 113.75708 * 221.08827 * 19 6 5 37 37 H 1.08998 * 113.76266 * 89.71988 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4875 -1.1221 1.0072 6 7 3.1107 -2.4564 1.5305 7 6 3.7945 -3.5260 0.7913 8 6 5.1232 -3.8507 1.4769 9 8 4.8697 -4.3909 2.7753 10 6 6.0510 -4.7295 3.5047 11 6 5.6675 -5.2860 4.8517 12 1 4.6258 -5.3728 5.1234 13 6 6.6463 -5.6853 5.7368 14 7 7.9148 -5.5800 5.4058 15 14 6.1709 -6.3757 7.4061 16 1 5.3382 -7.5910 7.2202 17 1 7.3985 -6.7275 8.1642 18 1 5.3982 -5.3569 8.1613 19 6 1.7246 -2.2785 1.0445 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6423 1.8961 0.8877 24 1 3.0850 1.3424 0.0046 25 1 1.6497 1.8934 -0.8923 26 1 1.7308 -0.3313 2.1014 27 1 3.8467 -1.1394 -0.0217 28 1 4.1346 -0.5538 1.6753 29 1 3.1661 -4.4165 0.7765 30 1 3.9837 -3.1977 -0.2308 31 1 5.6711 -4.5803 0.8805 32 1 5.7154 -2.9405 1.5713 33 1 6.6184 -5.4771 2.9505 34 1 6.6620 -3.8373 3.6413 35 1 8.6034 -5.8605 6.0286 36 1 0.9657 -2.6323 1.7424 37 1 1.5670 -2.6347 0.0265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385864957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -4.890212 kcal Electronic energy + Delta-G solvation = -15880.900672 eV Core-core repulsion = 13273.693499 eV Total energy + Delta-G solvation = -2607.207173 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07499 -36.78163 -35.85084 -32.70395 -30.81647 -28.07522 -27.27824 -25.98775 -25.59227 -23.21042 -22.19804 -20.86020 -19.54261 -16.49525 -16.23192 -16.03167 -15.63242 -15.13558 -14.61615 -14.47793 -14.20768 -13.67175 -13.39492 -12.95147 -12.72916 -12.51010 -12.28000 -11.88771 -11.65619 -11.52744 -11.36503 -10.85050 -10.76933 -10.65215 -10.44948 -10.30426 -9.91477 -9.02245 -8.72461 -8.63082 -8.53791 -8.05372 -6.03723 -4.04558 3.37218 3.39120 3.43724 3.67126 4.12530 4.34000 4.41656 4.91114 4.93987 5.00412 5.14954 5.24322 5.31803 5.32531 5.38743 5.42658 5.59375 5.62898 5.66154 5.68582 5.72708 5.80445 5.97783 6.00120 6.19366 6.33939 6.61399 6.78112 6.87897 7.18135 7.24454 7.52701 7.87892 8.25136 8.71081 9.10276 9.59974 11.08048 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.046420 B = 0.004410 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.045526 B = 6347.168891 C = 6518.819137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.540 5.540 3 C 0.024 3.976 4 C 0.046 3.954 5 C 0.012 3.988 6 N -0.459 5.459 7 C 0.029 3.971 8 C 0.073 3.927 9 O -0.382 6.382 10 C 0.194 3.806 11 C -0.511 4.511 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.908 3.092 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.013 3.987 20 H 0.066 0.934 21 H 0.025 0.975 22 H 0.069 0.931 23 H 0.026 0.974 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.002 0.998 34 H 0.003 0.997 35 H 0.263 0.737 36 H 0.086 0.914 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 11.251 -12.104 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.124 4.124 4 C -0.063 4.063 5 C -0.117 4.117 6 N -0.182 5.182 7 C -0.100 4.100 8 C -0.006 4.006 9 O -0.302 6.302 10 C 0.120 3.880 11 C -0.549 4.549 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.735 3.265 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.116 4.116 20 H 0.085 0.915 21 H 0.044 0.956 22 H 0.088 0.912 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.575 10.766 -11.698 19.665 hybrid contribution -0.111 0.199 0.609 0.650 sum -11.686 10.965 -11.089 19.487 Atomic orbital electron populations 1.22341 0.87372 1.02250 1.00458 1.62300 1.08001 1.13968 1.42209 1.22345 1.00980 0.88643 1.00470 1.23656 0.96153 0.93951 0.92539 1.24120 0.95419 0.92471 0.99695 1.68641 1.02033 1.01187 1.46350 1.22684 0.96909 0.96007 0.94385 1.22112 0.94484 0.96618 0.87349 1.87924 1.33974 1.82442 1.25830 1.20162 0.82841 0.94107 0.90893 1.21042 0.93843 1.41160 0.98858 0.91598 1.24946 0.94686 0.95952 0.98976 1.69958 0.99385 1.48146 1.36575 0.86400 0.77649 0.79485 0.82956 1.20052 1.21225 1.20032 1.23961 0.93942 0.93727 0.99985 0.91507 0.95604 0.91221 0.95579 0.91190 0.91496 0.90752 0.90641 0.89552 0.90297 0.93169 0.94469 0.94734 0.98034 0.97914 0.92707 0.89549 0.90775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.51 60.07 0.57 0.78 16 2 N -0.54 -5.55 4.96 -244.60 -1.21 -6.76 16 3 C 0.02 0.21 9.53 60.07 0.57 0.78 16 4 C 0.05 0.54 3.33 -69.41 -0.23 0.31 16 5 C 0.01 0.16 7.07 -2.63 -0.02 0.14 16 6 N -0.46 -7.35 6.11 -238.23 -1.45 -8.81 16 7 C 0.03 0.46 5.18 -3.82 -0.02 0.44 16 8 C 0.07 1.43 6.27 37.16 0.23 1.67 16 9 O -0.38 -9.79 10.27 -35.23 -0.36 -10.16 16 10 C 0.19 5.59 5.69 36.00 0.20 5.79 16 11 C -0.51 -15.63 9.43 -34.44 -0.32 -15.95 16 12 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 15 Si 0.91 22.43 29.54 -169.99 -5.02 17.41 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 19 C 0.01 0.17 6.88 -2.76 -0.02 0.15 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 22 H 0.07 0.58 7.47 -51.93 -0.39 0.19 16 23 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.07 0.61 7.58 -51.93 -0.39 0.22 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.93 7.49 -51.93 -0.39 0.54 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.08 1.26 8.08 -51.93 -0.42 0.84 16 30 H 0.05 0.67 7.39 -51.92 -0.38 0.29 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.07 0.88 7.92 -51.93 -0.41 0.46 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -32.76 305.45 -8.42 -41.19 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -6.58 Total: -6.17 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 0.87 Total: -4.35 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: -1.93 Total: -42.52 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -0.36 Total: -10.16 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.76 -8.42 -41.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385864957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.296 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds