Wall clock time and date at job start Mon Mar 30 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99725 * 2 1 4 4 C 1.46897 * 111.00209 * 123.95774 * 2 1 3 5 5 C 1.53939 * 113.73254 * 164.85675 * 4 2 1 6 6 N 1.48187 * 86.09884 * 221.95455 * 5 4 2 7 7 C 1.46906 * 111.07134 * 137.51875 * 6 5 4 8 8 C 1.53003 * 109.46857 * 90.56517 * 7 6 5 9 9 O 1.42900 * 109.47176 * 65.00289 * 8 7 6 10 10 C 1.42898 * 114.00059 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47081 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00093 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00221 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99881 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00282 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47156 * 60.00485 * 15 13 11 17 17 H 1.48503 * 109.47162 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46892 * 300.00234 * 15 13 11 19 19 C 1.47957 * 90.80000 * 24.60288 * 6 5 4 20 20 H 1.08997 * 109.47265 * 59.99802 * 1 2 3 21 21 H 1.08993 * 109.46711 * 299.99435 * 1 2 3 22 22 H 1.09004 * 109.46837 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.46841 * 59.74779 * 3 2 1 24 24 H 1.09001 * 109.46625 * 179.74455 * 3 2 1 25 25 H 1.08998 * 109.47215 * 299.74366 * 3 2 1 26 26 H 1.08998 * 112.93825 * 296.41819 * 4 2 1 27 27 H 1.08997 * 113.75994 * 336.23454 * 5 4 2 28 28 H 1.09003 * 113.75772 * 107.59890 * 5 4 2 29 29 H 1.08994 * 109.47205 * 210.56594 * 7 6 5 30 30 H 1.09008 * 109.46986 * 330.57065 * 7 6 5 31 31 H 1.09000 * 109.47364 * 185.00254 * 8 7 6 32 32 H 1.09002 * 109.47236 * 305.00045 * 8 7 6 33 33 H 1.08998 * 109.46713 * 299.99764 * 10 9 8 34 34 H 1.08995 * 109.47379 * 59.99821 * 10 9 8 35 35 H 0.96995 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.09002 * 113.75708 * 221.08827 * 19 6 5 37 37 H 1.08998 * 113.76266 * 89.71988 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4875 -1.1221 1.0072 6 7 3.1107 -2.4564 1.5305 7 6 3.7945 -3.5260 0.7913 8 6 5.1232 -3.8507 1.4769 9 8 4.8697 -4.3909 2.7753 10 6 6.0510 -4.7295 3.5047 11 6 5.6675 -5.2860 4.8517 12 1 4.6258 -5.3728 5.1234 13 6 6.6463 -5.6853 5.7368 14 7 7.9148 -5.5800 5.4058 15 14 6.1709 -6.3757 7.4061 16 1 5.3382 -7.5910 7.2202 17 1 7.3985 -6.7275 8.1642 18 1 5.3982 -5.3569 8.1613 19 6 1.7246 -2.2785 1.0445 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3632 0.5137 0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6423 1.8961 0.8877 24 1 3.0850 1.3424 0.0046 25 1 1.6497 1.8934 -0.8923 26 1 1.7308 -0.3313 2.1014 27 1 3.8467 -1.1394 -0.0217 28 1 4.1346 -0.5538 1.6753 29 1 3.1661 -4.4165 0.7765 30 1 3.9837 -3.1977 -0.2308 31 1 5.6711 -4.5803 0.8805 32 1 5.7154 -2.9405 1.5713 33 1 6.6184 -5.4771 2.9505 34 1 6.6620 -3.8373 3.6413 35 1 8.6034 -5.8605 6.0286 36 1 0.9657 -2.6323 1.7424 37 1 1.5670 -2.6347 0.0265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385864957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:19 Heat of formation + Delta-G solvation = -30.674417 kcal Electronic energy + Delta-G solvation = -15882.018759 eV Core-core repulsion = 13273.693499 eV Total energy + Delta-G solvation = -2608.325260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12387 -38.51702 -36.93051 -34.93760 -32.24593 -29.32449 -28.80792 -27.30798 -26.59586 -24.53870 -24.13951 -22.13894 -20.50537 -18.62833 -17.52702 -17.42110 -16.99909 -16.58178 -16.08484 -15.94632 -15.41706 -15.06059 -14.72980 -14.31856 -13.86501 -13.71556 -13.35374 -13.20824 -13.05827 -12.88954 -12.67719 -12.55856 -12.41910 -12.17966 -11.88968 -11.58525 -11.50328 -11.26366 -10.84833 -10.19291 -9.69996 -9.38910 -8.31543 -6.44036 1.39536 1.45073 1.53415 2.35580 2.78467 3.01829 3.12243 3.22075 3.40751 3.98128 4.08876 4.19614 4.30667 4.34631 4.45388 4.49484 4.53866 4.58434 4.66754 4.68237 4.76294 4.78866 4.84077 4.91972 5.01751 5.03204 5.07398 5.18549 5.44857 5.55638 5.97243 6.04820 6.05384 6.09998 6.56723 6.85848 7.28227 8.80886 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.046420 B = 0.004410 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.045526 B = 6347.168891 C = 6518.819137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.023 3.977 4 C 0.058 3.942 5 C 0.015 3.985 6 N -0.501 5.501 7 C 0.039 3.961 8 C 0.063 3.937 9 O -0.398 6.398 10 C 0.209 3.791 11 C -0.549 4.549 12 H 0.060 0.940 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.264 1.264 17 H -0.273 1.273 18 H -0.266 1.266 19 C 0.020 3.980 20 H 0.081 0.919 21 H 0.026 0.974 22 H 0.070 0.930 23 H 0.026 0.974 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.033 0.967 33 H -0.015 1.015 34 H -0.019 1.019 35 H 0.271 0.729 36 H 0.084 0.916 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.002 11.466 -12.246 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.051 4.051 5 C -0.114 4.114 6 N -0.224 5.224 7 C -0.090 4.090 8 C -0.015 4.015 9 O -0.318 6.318 10 C 0.134 3.866 11 C -0.586 4.586 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.807 3.193 16 H -0.189 1.189 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.108 4.108 20 H 0.100 0.900 21 H 0.044 0.956 22 H 0.089 0.911 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.002 0.998 34 H -0.001 1.001 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.717 10.998 -11.869 20.580 hybrid contribution 0.252 0.194 0.559 0.643 sum -12.465 11.192 -11.310 20.213 Atomic orbital electron populations 1.22405 0.86222 1.02637 1.01228 1.62309 1.09082 1.14665 1.41011 1.22399 1.00890 0.87967 1.01263 1.23416 0.95098 0.93753 0.92811 1.24114 0.96308 0.91106 0.99890 1.68576 1.03946 1.02145 1.47721 1.22599 0.94660 0.96384 0.95312 1.22474 0.97385 0.96470 0.85146 1.87879 1.32672 1.82847 1.28389 1.19792 0.83423 0.92464 0.90937 1.21365 0.93981 1.42981 1.00317 0.92183 1.25984 0.94377 0.95503 1.03359 1.70066 1.00563 1.48150 1.38334 0.85216 0.77947 0.78984 0.77141 1.18894 1.19787 1.19108 1.23953 0.92107 0.94290 1.00498 0.89989 0.95552 0.91086 0.95546 0.91429 0.89917 0.91719 0.89446 0.90592 0.90459 0.89931 0.93485 0.94904 0.99760 1.00150 0.92013 0.89717 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.51 127.69 1.21 1.56 16 2 N -0.55 -10.13 4.96 -927.79 -4.60 -14.73 16 3 C 0.02 0.36 9.53 127.69 1.22 1.57 16 4 C 0.06 1.31 3.33 46.48 0.15 1.47 16 5 C 0.01 0.38 7.07 86.37 0.61 0.99 16 6 N -0.50 -15.68 6.11 -907.62 -5.54 -21.23 16 7 C 0.04 1.21 5.18 86.30 0.45 1.65 16 8 C 0.06 2.49 6.27 71.98 0.45 2.94 16 9 O -0.40 -20.88 10.27 -148.98 -1.53 -22.41 16 10 C 0.21 12.42 5.69 71.24 0.41 12.82 16 11 C -0.55 -34.21 9.43 25.60 0.24 -33.97 16 12 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 13 C 0.01 0.36 5.46 84.66 0.46 0.82 16 14 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 15 Si 0.98 45.63 29.54 68.60 2.03 47.66 16 16 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.02 0.49 6.88 86.41 0.59 1.08 16 20 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 22 H 0.07 1.04 7.47 -2.38 -0.02 1.02 16 23 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.07 1.08 7.58 -2.39 -0.02 1.06 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 2.00 7.49 -2.39 -0.02 1.99 16 28 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 30 H 0.08 2.01 7.39 -2.38 -0.02 1.99 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 34 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.71 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 1.87 7.92 -2.39 -0.02 1.86 16 Total: -1.00 -70.15 305.45 -2.56 -72.72 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: 1.00 Total: 4.38 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.80 Total: -9.06 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -9.86 Total: -93.28 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -1.53 Total: -22.41 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -70.15 -2.56 -72.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385864957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.041 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds