Wall clock time and date at job start Mon Mar 30 2020 03:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46913 * 1 3 3 C 1.46892 * 110.99839 * 2 1 4 4 C 1.53005 * 109.47353 * 293.94746 * 3 2 1 5 5 H 1.09003 * 109.46601 * 60.00426 * 4 3 2 6 6 O 1.42893 * 109.46990 * 300.00547 * 4 3 2 7 7 C 1.52996 * 109.47212 * 180.02562 * 4 3 2 8 8 N 1.46899 * 109.47113 * 185.00193 * 7 4 3 9 9 C 1.46907 * 110.99494 * 123.95211 * 2 1 3 10 10 C 1.53003 * 109.46876 * 76.13758 * 9 2 1 11 11 C 1.50699 * 115.55136 * 55.03415 * 10 9 2 12 12 H 1.08004 * 119.99189 * 265.71040 * 11 10 9 13 13 C 1.37874 * 120.00230 * 85.70935 * 11 10 9 14 14 N 1.31511 * 119.99703 * 355.39114 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 175.38360 * 13 11 10 16 16 H 1.48495 * 109.46951 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47122 * 300.00423 * 15 13 11 18 18 H 1.48503 * 109.46707 * 60.00307 * 15 13 11 19 19 C 1.53000 * 117.49257 * 200.70082 * 10 9 2 20 20 C 1.52999 * 117.49751 * 269.35669 * 10 9 2 21 21 H 1.09002 * 109.46753 * 301.10387 * 1 2 3 22 22 H 1.08996 * 109.46466 * 61.10164 * 1 2 3 23 23 H 1.08994 * 109.46960 * 181.10278 * 1 2 3 24 24 H 1.08996 * 109.47770 * 53.95159 * 3 2 1 25 25 H 1.09003 * 109.46920 * 173.95367 * 3 2 1 26 26 H 0.96696 * 114.00284 * 299.99182 * 6 4 3 27 27 H 1.08994 * 109.47614 * 305.00287 * 7 4 3 28 28 H 1.09004 * 109.46652 * 65.00501 * 7 4 3 29 29 H 1.00902 * 111.00276 * 180.02562 * 8 7 4 30 30 H 1.00906 * 111.00214 * 303.95933 * 8 7 4 31 31 H 1.08997 * 109.47085 * 316.13669 * 9 2 1 32 32 H 1.08993 * 109.46683 * 196.13427 * 9 2 1 33 33 H 0.96996 * 120.00571 * 354.84614 * 14 13 11 34 34 H 1.09007 * 117.49426 * 215.00634 * 19 10 9 35 35 H 1.08993 * 117.50399 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.50065 * 359.97438 * 20 10 9 37 37 H 1.09001 * 117.49521 * 144.97474 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 1 0.5473 2.0844 -1.4266 6 8 2.2011 1.3285 -2.4075 7 6 2.1805 3.4855 -1.3186 8 7 1.7301 4.1830 -2.5305 9 6 1.9955 -0.7660 1.1377 10 6 1.8555 -2.2628 0.8531 11 6 2.4847 -2.7422 -0.4296 12 1 1.8893 -2.8184 -1.3274 13 6 3.8202 -3.0835 -0.4569 14 7 4.5664 -2.9052 0.6113 15 14 4.5697 -3.7993 -2.0111 16 1 6.0098 -4.0799 -1.7822 17 1 3.8697 -5.0608 -2.3625 18 1 4.4251 -2.8264 -3.1237 19 6 1.8795 -3.2147 2.0507 20 6 0.5671 -2.9510 1.3084 21 1 -0.3633 0.5309 0.8800 22 1 -0.3632 0.4966 -0.8997 23 1 -0.3633 -1.0274 0.0198 24 1 1.5612 1.9274 0.8308 25 1 3.0798 1.3443 0.1083 26 1 3.1654 1.2640 -2.3762 27 1 1.8163 4.0149 -0.4382 28 1 3.2699 3.4560 -1.3000 29 1 2.0801 5.1290 -2.5544 30 1 2.0001 3.6767 -3.3605 31 1 1.4339 -0.5130 2.0370 32 1 3.0472 -0.5210 1.2851 33 1 4.1972 -2.4653 1.3930 34 1 2.3505 -4.1878 1.9108 35 1 1.9946 -2.7747 3.0412 36 1 -0.1806 -2.3375 1.8111 37 1 0.1743 -3.7502 0.6799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389369967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:26 Heat of formation + Delta-G solvation = -24.539547 kcal Electronic energy + Delta-G solvation = -16811.700880 eV Core-core repulsion = 14203.641648 eV Total energy + Delta-G solvation = -2608.059232 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.47029 -37.08924 -34.80921 -33.59970 -31.69692 -29.26458 -27.02363 -25.26813 -24.52184 -21.98597 -21.20112 -20.68402 -19.15922 -16.49578 -16.39275 -15.88855 -15.64876 -14.73051 -14.43537 -14.04958 -13.71049 -13.61677 -13.13442 -12.63797 -12.55537 -12.29036 -12.00605 -11.32522 -11.21422 -10.97824 -10.82193 -10.66718 -10.47590 -10.33123 -10.00722 -9.79300 -9.28767 -8.78601 -8.38286 -8.35201 -8.13893 -7.42354 -6.16226 -3.85247 3.53555 3.55436 3.73276 4.17694 4.63688 4.67602 4.80889 5.11083 5.17545 5.24726 5.43340 5.50207 5.57923 5.65642 5.84179 5.89285 5.98002 6.10269 6.16278 6.28385 6.36285 6.46605 6.49959 6.62564 6.74812 6.94007 7.00807 7.33497 7.34382 7.36002 7.77750 7.91642 8.06850 8.47329 8.64769 9.06435 9.84795 11.22380 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.008945 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.564436 B = 3129.428530 C = 3899.547969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.500 5.500 3 C 0.025 3.975 4 C 0.114 3.886 5 H 0.101 0.899 6 O -0.542 6.542 7 C 0.029 3.971 8 N -0.848 5.848 9 C 0.099 3.901 10 C 0.035 3.965 11 C -0.533 4.533 12 H 0.051 0.949 13 C 0.022 3.978 14 N -0.918 5.918 15 Si 1.064 2.936 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.288 1.288 19 C -0.182 4.182 20 C -0.201 4.201 21 H 0.007 0.993 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.072 0.928 26 H 0.370 0.630 27 H 0.075 0.925 28 H 0.029 0.971 29 H 0.337 0.663 30 H 0.348 0.652 31 H 0.002 0.998 32 H 0.064 0.936 33 H 0.270 0.730 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 10.722 -1.517 11.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.222 5.222 3 C -0.105 4.105 4 C 0.054 3.946 5 H 0.119 0.881 6 O -0.346 6.346 7 C -0.103 4.103 8 N -0.378 5.378 9 C -0.029 4.029 10 C 0.034 3.966 11 C -0.571 4.571 12 H 0.070 0.930 13 C -0.181 4.181 14 N -0.555 5.555 15 Si 0.893 3.107 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.214 1.214 19 C -0.220 4.220 20 C -0.238 4.238 21 H 0.025 0.975 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.091 0.909 26 H 0.217 0.783 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.149 0.851 30 H 0.161 0.839 31 H 0.020 0.980 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.648 9.674 -2.469 10.630 hybrid contribution -0.136 1.263 1.567 2.017 sum -3.785 10.937 -0.902 11.608 Atomic orbital electron populations 1.22421 0.88609 1.02339 0.98620 1.61600 1.06428 1.09892 1.44298 1.22796 1.00618 0.90813 0.96264 1.21917 0.98931 0.87247 0.86504 0.88132 1.86608 1.25205 1.76602 1.46195 1.22508 0.97340 0.96435 0.93985 1.58641 1.67962 1.06121 1.05049 1.21785 0.98068 0.95186 0.87846 1.19081 0.94893 0.88009 0.94599 1.21104 0.96366 1.46016 0.93640 0.93028 1.25632 0.93870 0.95972 1.02616 1.70740 1.39192 1.40906 1.04626 0.83624 0.75835 0.76249 0.74978 1.21267 1.21824 1.21408 1.22766 1.00959 1.02599 0.95648 1.22917 0.91211 1.04542 1.05134 0.97507 0.92232 0.90676 0.95478 0.90911 0.78314 0.90658 0.95267 0.85149 0.83875 0.97991 0.91741 0.91953 0.89739 0.91994 0.91992 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.10 60.07 0.55 1.06 16 2 N -0.50 -10.05 4.25 -242.91 -1.03 -11.08 16 3 C 0.02 0.40 4.60 -3.83 -0.02 0.39 16 4 C 0.11 1.68 3.08 -26.73 -0.08 1.60 16 5 H 0.10 1.58 6.58 -51.93 -0.34 1.24 16 6 O -0.54 -9.02 12.72 -35.23 -0.45 -9.47 16 7 C 0.03 0.34 6.46 -3.83 -0.02 0.32 16 8 N -0.85 -9.31 9.62 -10.37 -0.10 -9.41 16 9 C 0.10 2.19 4.84 -3.82 -0.02 2.17 16 10 C 0.04 0.86 0.83 -155.66 -0.13 0.73 16 11 C -0.53 -14.83 8.53 -34.44 -0.29 -15.12 16 12 H 0.05 1.50 7.82 -52.48 -0.41 1.09 16 13 C 0.02 0.63 5.39 -17.82 -0.10 0.54 16 14 N -0.92 -27.08 13.45 55.43 0.75 -26.33 16 15 Si 1.06 25.53 29.91 -169.99 -5.08 20.45 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.18 -4.27 8.73 -26.69 -0.23 -4.50 16 20 C -0.20 -4.45 8.51 -26.69 -0.23 -4.68 16 21 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 22 H 0.06 1.01 6.52 -51.93 -0.34 0.67 16 23 H 0.07 1.46 6.09 -51.93 -0.32 1.14 16 24 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 25 H 0.07 1.22 7.83 -51.93 -0.41 0.82 16 26 H 0.37 5.38 9.04 45.56 0.41 5.79 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.34 2.92 9.08 -39.29 -0.36 2.57 16 30 H 0.35 3.85 8.55 -39.29 -0.34 3.51 16 31 H 0.00 0.04 7.94 -51.93 -0.41 -0.37 16 32 H 0.06 1.53 7.28 -51.93 -0.38 1.15 16 33 H 0.27 7.88 6.19 -40.82 -0.25 7.63 16 34 H 0.08 2.14 8.14 -51.93 -0.42 1.72 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.24 7.91 -51.93 -0.41 0.83 16 37 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 LS Contribution 299.12 15.07 4.51 4.51 Total: -1.00 -30.69 299.12 -7.29 -37.98 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.30 Total: 10.85 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: -0.58 Total: -17.50 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.39 Total: -46.82 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -0.45 Total: -9.47 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.69 -7.29 -37.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389369967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.442 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds