Wall clock time and date at job start Mon Mar 30 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46913 * 1 3 3 C 1.46892 * 110.99839 * 2 1 4 4 C 1.53005 * 109.47353 * 293.94746 * 3 2 1 5 5 H 1.09003 * 109.46601 * 60.00426 * 4 3 2 6 6 O 1.42893 * 109.46990 * 300.00547 * 4 3 2 7 7 C 1.52996 * 109.47212 * 180.02562 * 4 3 2 8 8 N 1.46899 * 109.47113 * 185.00193 * 7 4 3 9 9 C 1.46907 * 110.99494 * 123.95211 * 2 1 3 10 10 C 1.53003 * 109.46876 * 76.13758 * 9 2 1 11 11 C 1.50699 * 115.55136 * 55.03415 * 10 9 2 12 12 H 1.08004 * 119.99189 * 265.71040 * 11 10 9 13 13 C 1.37874 * 120.00230 * 85.70935 * 11 10 9 14 14 N 1.31511 * 119.99703 * 355.39114 * 13 11 10 15 15 Si 1.86801 * 119.99847 * 175.38360 * 13 11 10 16 16 H 1.48495 * 109.46951 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47122 * 300.00423 * 15 13 11 18 18 H 1.48503 * 109.46707 * 60.00307 * 15 13 11 19 19 C 1.53000 * 117.49257 * 200.70082 * 10 9 2 20 20 C 1.52999 * 117.49751 * 269.35669 * 10 9 2 21 21 H 1.09002 * 109.46753 * 301.10387 * 1 2 3 22 22 H 1.08996 * 109.46466 * 61.10164 * 1 2 3 23 23 H 1.08994 * 109.46960 * 181.10278 * 1 2 3 24 24 H 1.08996 * 109.47770 * 53.95159 * 3 2 1 25 25 H 1.09003 * 109.46920 * 173.95367 * 3 2 1 26 26 H 0.96696 * 114.00284 * 299.99182 * 6 4 3 27 27 H 1.08994 * 109.47614 * 305.00287 * 7 4 3 28 28 H 1.09004 * 109.46652 * 65.00501 * 7 4 3 29 29 H 1.00902 * 111.00276 * 180.02562 * 8 7 4 30 30 H 1.00906 * 111.00214 * 303.95933 * 8 7 4 31 31 H 1.08997 * 109.47085 * 316.13669 * 9 2 1 32 32 H 1.08993 * 109.46683 * 196.13427 * 9 2 1 33 33 H 0.96996 * 120.00571 * 354.84614 * 14 13 11 34 34 H 1.09007 * 117.49426 * 215.00634 * 19 10 9 35 35 H 1.08993 * 117.50399 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.50065 * 359.97438 * 20 10 9 37 37 H 1.09001 * 117.49521 * 144.97474 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6316 2.0574 -1.3183 5 1 0.5473 2.0844 -1.4266 6 8 2.2011 1.3285 -2.4075 7 6 2.1805 3.4855 -1.3186 8 7 1.7301 4.1830 -2.5305 9 6 1.9955 -0.7660 1.1377 10 6 1.8555 -2.2628 0.8531 11 6 2.4847 -2.7422 -0.4296 12 1 1.8893 -2.8184 -1.3274 13 6 3.8202 -3.0835 -0.4569 14 7 4.5664 -2.9052 0.6113 15 14 4.5697 -3.7993 -2.0111 16 1 6.0098 -4.0799 -1.7822 17 1 3.8697 -5.0608 -2.3625 18 1 4.4251 -2.8264 -3.1237 19 6 1.8795 -3.2147 2.0507 20 6 0.5671 -2.9510 1.3084 21 1 -0.3633 0.5309 0.8800 22 1 -0.3632 0.4966 -0.8997 23 1 -0.3633 -1.0274 0.0198 24 1 1.5612 1.9274 0.8308 25 1 3.0798 1.3443 0.1083 26 1 3.1654 1.2640 -2.3762 27 1 1.8163 4.0149 -0.4382 28 1 3.2699 3.4560 -1.3000 29 1 2.0801 5.1290 -2.5544 30 1 2.0001 3.6767 -3.3605 31 1 1.4339 -0.5130 2.0370 32 1 3.0472 -0.5210 1.2851 33 1 4.1972 -2.4653 1.3930 34 1 2.3505 -4.1878 1.9108 35 1 1.9946 -2.7747 3.0412 36 1 -0.1806 -2.3375 1.8111 37 1 0.1743 -3.7502 0.6799 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389369967.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:25 Heat of formation + Delta-G solvation = -49.182757 kcal Electronic energy + Delta-G solvation = -16812.769490 eV Core-core repulsion = 14203.641648 eV Total energy + Delta-G solvation = -2609.127842 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91128 -38.65244 -36.35112 -34.61719 -33.81221 -30.51848 -28.60848 -26.97803 -26.21569 -23.29002 -23.01989 -21.99143 -21.11205 -18.43917 -17.50071 -17.13898 -16.78071 -16.18693 -16.05505 -15.59530 -15.53443 -14.91267 -14.58617 -14.26769 -14.16986 -13.77117 -13.36100 -12.94681 -12.71649 -12.57227 -12.54949 -12.50008 -12.18069 -11.91678 -11.74310 -11.32952 -10.82303 -10.44481 -10.32120 -10.11331 -9.64647 -8.93026 -8.38356 -6.06926 1.57949 1.64905 1.83512 2.65843 2.86607 3.35177 3.39124 3.61300 3.65982 4.03047 4.10942 4.18469 4.22753 4.31696 4.40759 4.49676 4.53150 4.57545 4.66376 4.70859 4.77967 4.83071 4.90896 5.06230 5.08446 5.17599 5.46589 5.54395 6.15275 6.22381 6.37533 6.38381 6.46226 6.57563 6.88910 6.89964 7.68287 9.01487 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.023297 B = 0.008945 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.564436 B = 3129.428530 C = 3899.547969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.525 5.525 3 C 0.027 3.973 4 C 0.121 3.879 5 H 0.093 0.907 6 O -0.563 6.563 7 C 0.038 3.962 8 N -0.853 5.853 9 C 0.113 3.887 10 C 0.009 3.991 11 C -0.538 4.538 12 H 0.031 0.969 13 C -0.021 4.021 14 N -0.941 5.941 15 Si 1.104 2.896 16 H -0.288 1.288 17 H -0.281 1.281 18 H -0.276 1.276 19 C -0.184 4.184 20 C -0.178 4.178 21 H 0.027 0.973 22 H 0.068 0.932 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.377 0.623 27 H 0.087 0.913 28 H 0.037 0.963 29 H 0.351 0.649 30 H 0.347 0.653 31 H 0.017 0.983 32 H 0.041 0.959 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 11.964 -1.663 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C -0.102 4.102 4 C 0.061 3.939 5 H 0.110 0.890 6 O -0.368 6.368 7 C -0.093 4.093 8 N -0.385 5.385 9 C -0.015 4.015 10 C 0.008 3.992 11 C -0.577 4.577 12 H 0.049 0.951 13 C -0.219 4.219 14 N -0.579 5.579 15 Si 0.928 3.072 16 H -0.214 1.214 17 H -0.207 1.207 18 H -0.202 1.202 19 C -0.222 4.222 20 C -0.215 4.215 21 H 0.045 0.955 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.224 0.776 27 H 0.105 0.895 28 H 0.055 0.945 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.372 10.939 -2.614 12.066 hybrid contribution 0.023 0.890 1.609 1.839 sum -4.349 11.828 -1.005 12.642 Atomic orbital electron populations 1.22369 0.87445 1.01709 1.00000 1.61514 1.07686 1.11951 1.43622 1.22829 1.00082 0.89294 0.97985 1.21881 0.98460 0.88618 0.84945 0.88964 1.86570 1.25956 1.77265 1.47040 1.22356 0.97673 0.94528 0.94792 1.58615 1.68198 1.06954 1.04694 1.21479 0.97028 0.93778 0.89242 1.19185 0.96615 0.89651 0.93766 1.21268 0.96357 1.45699 0.94337 0.95055 1.26735 0.94669 0.96166 1.04322 1.70836 1.39514 1.42430 1.05079 0.83084 0.75119 0.76340 0.72614 1.21379 1.20741 1.20160 1.22678 1.01917 1.01247 0.96356 1.22892 0.90843 1.03815 1.03944 0.95508 0.91341 0.92297 0.93650 0.91751 0.77551 0.89508 0.94488 0.83519 0.83973 0.96518 0.94088 0.92822 0.92332 0.90194 0.89181 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.13 9.10 127.69 1.16 2.29 16 2 N -0.52 -20.50 4.25 -922.43 -3.92 -24.42 16 3 C 0.03 0.85 4.60 86.31 0.40 1.24 16 4 C 0.12 3.35 3.08 30.59 0.09 3.44 16 5 H 0.09 2.72 6.58 -2.39 -0.02 2.71 16 6 O -0.56 -18.20 12.72 -148.98 -1.90 -20.09 16 7 C 0.04 0.81 6.46 86.30 0.56 1.37 16 8 N -0.85 -16.84 9.62 -186.73 -1.80 -18.64 16 9 C 0.11 4.91 4.84 86.30 0.42 5.33 16 10 C 0.01 0.42 0.83 -52.93 -0.04 0.38 16 11 C -0.54 -30.17 8.53 25.60 0.22 -29.95 16 12 H 0.03 1.84 7.82 -2.91 -0.02 1.82 16 13 C -0.02 -1.17 5.39 84.65 0.46 -0.72 16 14 N -0.94 -56.10 13.45 21.45 0.29 -55.82 16 15 Si 1.10 51.63 29.91 68.60 2.05 53.68 16 16 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 19 C -0.18 -8.58 8.73 30.62 0.27 -8.31 16 20 C -0.18 -7.65 8.51 30.62 0.26 -7.39 16 21 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 22 H 0.07 2.21 6.52 -2.39 -0.02 2.19 16 23 H 0.06 2.19 6.09 -2.39 -0.01 2.18 16 24 H 0.05 1.26 8.12 -2.39 -0.02 1.24 16 25 H 0.06 2.11 7.83 -2.39 -0.02 2.09 16 26 H 0.38 10.72 9.04 -74.06 -0.67 10.05 16 27 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 28 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.35 5.24 9.08 -89.69 -0.81 4.42 16 30 H 0.35 7.06 8.55 -89.69 -0.77 6.29 16 31 H 0.02 0.67 7.94 -2.39 -0.02 0.65 16 32 H 0.04 1.94 7.28 -2.39 -0.02 1.93 16 33 H 0.26 15.57 6.19 -92.71 -0.57 14.99 16 34 H 0.06 3.01 8.14 -2.38 -0.02 2.99 16 35 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.09 3.36 7.91 -2.39 -0.02 3.34 16 37 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -64.76 299.12 -2.47 -67.23 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.98 Total: 30.37 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 3.79 Total: -32.31 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -5.43 Total: -98.88 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.90 Total: -20.09 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -64.76 -2.47 -67.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389369967.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.047 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds