Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00169 * 2 1 4 4 C 1.52996 * 109.47095 * 287.22599 * 3 2 1 5 5 H 1.08997 * 109.47027 * 306.58427 * 4 3 2 6 6 O 1.42901 * 109.47332 * 66.58290 * 4 3 2 7 7 C 1.53001 * 109.46927 * 186.58132 * 4 3 2 8 8 N 1.46904 * 109.47103 * 179.97438 * 7 4 3 9 9 C 1.46902 * 111.00302 * 123.95738 * 2 1 3 10 10 C 1.53000 * 109.47036 * 74.35086 * 9 2 1 11 11 C 1.50698 * 115.55236 * 53.93339 * 10 9 2 12 12 H 1.07997 * 120.00414 * 268.94753 * 11 10 9 13 13 C 1.37880 * 119.99505 * 88.95240 * 11 10 9 14 14 N 1.31510 * 120.00270 * 3.20776 * 13 11 10 15 15 Si 1.86800 * 119.99857 * 183.21372 * 13 11 10 16 16 H 1.48498 * 109.47175 * 89.99784 * 15 13 11 17 17 H 1.48501 * 109.46989 * 210.00110 * 15 13 11 18 18 H 1.48505 * 109.47047 * 329.99700 * 15 13 11 19 19 C 1.53008 * 117.49501 * 268.26594 * 10 9 2 20 20 C 1.53003 * 117.49937 * 199.60900 * 10 9 2 21 21 H 1.08999 * 109.47221 * 64.12329 * 1 2 3 22 22 H 1.09001 * 109.46809 * 184.13121 * 1 2 3 23 23 H 1.09004 * 109.46906 * 304.12341 * 1 2 3 24 24 H 1.08998 * 109.46485 * 47.22167 * 3 2 1 25 25 H 1.08997 * 109.47365 * 167.22360 * 3 2 1 26 26 H 0.96697 * 114.00313 * 59.99771 * 6 4 3 27 27 H 1.09001 * 109.46870 * 299.99696 * 7 4 3 28 28 H 1.08995 * 109.47038 * 59.99826 * 7 4 3 29 29 H 1.00895 * 111.00254 * 179.97438 * 8 7 4 30 30 H 1.00900 * 111.00111 * 303.95850 * 8 7 4 31 31 H 1.09006 * 109.47058 * 194.34739 * 9 2 1 32 32 H 1.08996 * 109.47089 * 314.35057 * 9 2 1 33 33 H 0.97004 * 120.00399 * 185.01059 * 14 13 11 34 34 H 1.08991 * 117.50066 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49145 * 145.02176 * 19 10 9 36 36 H 1.08997 * 117.50127 * 214.97857 * 20 10 9 37 37 H 1.09002 * 117.49583 * 359.97420 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7795 2.0007 -1.3778 5 1 2.2006 1.3502 -2.1443 6 8 0.3796 2.1674 -1.6111 7 6 2.4712 3.3644 -1.4297 8 7 2.2643 3.9683 -2.7528 9 6 1.9955 -0.7660 1.1375 10 6 1.8151 -2.2620 0.8722 11 6 2.3887 -2.7656 -0.4272 12 1 1.7751 -2.7881 -1.3156 13 6 3.6969 -3.1977 -0.4816 14 7 4.4249 -3.2298 0.6131 15 14 4.4352 -3.7373 -2.1105 16 1 5.0541 -2.5680 -2.7849 17 1 5.4709 -4.7730 -1.8656 18 1 3.3674 -4.2999 -2.9757 19 6 0.5295 -2.9192 1.3788 20 6 1.8616 -3.2039 2.0771 21 1 -0.3633 0.4485 -0.9246 22 1 -0.3633 -1.0250 0.0740 23 1 -0.3633 0.5765 0.8508 24 1 1.4741 1.9607 0.7543 25 1 3.0613 1.3515 0.2273 26 1 -0.0618 2.7360 -0.9654 27 1 2.0500 4.0148 -0.6631 28 1 3.5390 3.2372 -1.2517 29 1 2.7116 4.8707 -2.8123 30 1 2.5886 3.3546 -3.4851 31 1 3.0553 -0.5449 1.2651 32 1 1.4551 -0.4898 2.0429 33 1 5.3650 -3.4639 0.5638 34 1 -0.1877 -2.2858 1.9005 35 1 0.0990 -3.7161 0.7723 36 1 2.3068 -4.1878 1.9299 37 1 2.0212 -2.7577 3.0587 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389369969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -18.415021 kcal Electronic energy + Delta-G solvation = -16728.547116 eV Core-core repulsion = 14120.753463 eV Total energy + Delta-G solvation = -2607.793653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.45305 -36.86122 -34.53521 -33.70635 -31.73647 -29.30651 -26.81079 -25.36191 -24.73964 -21.77524 -20.98648 -20.85270 -18.88537 -16.51147 -16.02842 -15.75069 -15.49826 -14.56693 -14.51628 -14.25276 -13.79094 -13.64936 -13.11183 -12.57053 -12.51996 -12.02362 -11.65062 -11.35904 -11.09789 -10.92616 -10.82283 -10.61421 -10.54605 -10.37294 -10.04062 -9.70655 -9.13591 -8.81968 -8.69527 -8.22370 -7.94274 -7.36081 -5.87608 -3.89273 3.38186 3.44334 3.49013 4.24648 4.53526 4.66148 4.83934 5.14290 5.30209 5.38720 5.47100 5.55352 5.58124 5.68953 5.96314 6.07284 6.17981 6.33118 6.36287 6.40067 6.55059 6.67706 6.81265 6.84765 6.98933 7.02315 7.22186 7.34888 7.55663 7.65390 7.92360 7.96257 8.04976 8.07478 8.64641 9.10241 9.72981 11.21362 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.008695 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.065652 B = 3219.623917 C = 3981.903949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.509 5.509 3 C 0.027 3.973 4 C 0.116 3.884 5 H 0.106 0.894 6 O -0.542 6.542 7 C 0.029 3.971 8 N -0.843 5.843 9 C 0.102 3.898 10 C 0.051 3.949 11 C -0.457 4.457 12 H 0.059 0.941 13 C 0.065 3.935 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.283 1.283 17 H -0.291 1.291 18 H -0.275 1.275 19 C -0.218 4.218 20 C -0.150 4.150 21 H 0.084 0.916 22 H 0.069 0.931 23 H 0.001 0.999 24 H 0.023 0.977 25 H 0.075 0.925 26 H 0.363 0.637 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.336 0.664 30 H 0.343 0.657 31 H 0.067 0.933 32 H 0.000 1.000 33 H 0.255 0.745 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.415 11.357 -0.941 11.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.231 5.231 3 C -0.103 4.103 4 C 0.056 3.944 5 H 0.124 0.876 6 O -0.346 6.346 7 C -0.103 4.103 8 N -0.372 5.372 9 C -0.025 4.025 10 C 0.050 3.950 11 C -0.495 4.495 12 H 0.077 0.923 13 C -0.136 4.136 14 N -0.530 5.530 15 Si 0.715 3.285 16 H -0.209 1.209 17 H -0.217 1.217 18 H -0.200 1.200 19 C -0.255 4.255 20 C -0.188 4.188 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.019 0.981 24 H 0.042 0.958 25 H 0.094 0.906 26 H 0.209 0.791 27 H 0.088 0.912 28 H 0.053 0.947 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.085 0.915 32 H 0.018 0.982 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.729 10.587 -1.613 11.339 hybrid contribution 1.365 0.479 0.483 1.525 sum -2.363 11.066 -1.131 11.372 Atomic orbital electron populations 1.22683 0.88042 1.01912 1.00211 1.61688 1.07184 1.09634 1.44610 1.22761 1.00690 0.91158 0.95691 1.21971 0.81655 0.93139 0.97652 0.87640 1.86626 1.20583 1.71316 1.56063 1.22508 0.98690 0.97158 0.91901 1.58582 1.67046 1.07350 1.04205 1.21738 0.98254 0.94872 0.87632 1.18806 0.93563 0.88215 0.94408 1.20294 0.96425 1.39341 0.93418 0.92322 1.24925 0.97490 0.95443 0.95741 1.70016 1.06828 1.49821 1.26314 0.86681 0.78922 0.78170 0.84720 1.20906 1.21690 1.19991 1.23070 0.91585 1.04677 1.06206 1.22477 0.98319 1.02470 0.95563 0.89762 0.91200 0.98094 0.95849 0.90614 0.79140 0.91192 0.94698 0.85214 0.84445 0.91450 0.98182 0.93479 0.92298 0.90661 0.89562 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.91 60.07 0.54 0.89 16 2 N -0.51 -10.17 4.32 -242.91 -1.05 -11.22 16 3 C 0.03 0.43 4.79 -3.82 -0.02 0.41 16 4 C 0.12 1.68 3.37 -26.73 -0.09 1.59 16 5 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 6 O -0.54 -7.91 10.25 -35.23 -0.36 -8.27 16 7 C 0.03 0.34 6.45 -3.82 -0.02 0.31 16 8 N -0.84 -9.19 9.49 -10.37 -0.10 -9.29 16 9 C 0.10 2.29 4.90 -3.82 -0.02 2.27 16 10 C 0.05 1.26 1.35 -155.66 -0.21 1.05 16 11 C -0.46 -12.59 8.53 -34.44 -0.29 -12.88 16 12 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 13 C 0.06 1.79 5.42 -17.82 -0.10 1.70 16 14 N -0.89 -25.45 12.38 55.43 0.69 -24.77 16 15 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.22 -4.89 8.44 -26.69 -0.23 -5.12 16 20 C -0.15 -3.63 9.01 -26.69 -0.24 -3.87 16 21 H 0.08 1.47 5.62 -51.93 -0.29 1.18 16 22 H 0.07 1.38 5.94 -51.93 -0.31 1.07 16 23 H 0.00 0.01 8.02 -51.93 -0.42 -0.41 16 24 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 25 H 0.08 1.25 7.68 -51.93 -0.40 0.85 16 26 H 0.36 4.17 9.05 45.56 0.41 4.58 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.34 2.92 9.08 -39.29 -0.36 2.56 16 30 H 0.34 3.69 8.99 -39.29 -0.35 3.33 16 31 H 0.07 1.62 7.67 -51.93 -0.40 1.22 16 32 H 0.00 0.00 7.96 -51.93 -0.41 -0.41 16 33 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 34 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 35 H 0.07 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.09 2.26 8.00 -51.93 -0.42 1.84 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -29.76 299.23 -7.44 -37.21 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.42 Total: 8.82 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.68 Total: -13.65 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.46 Total: -45.27 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.36 Total: -8.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.76 -7.44 -37.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389369969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.791 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds