Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 111.00169 * 2 1 4 4 C 1.52996 * 109.47095 * 287.22599 * 3 2 1 5 5 H 1.08997 * 109.47027 * 306.58427 * 4 3 2 6 6 O 1.42901 * 109.47332 * 66.58290 * 4 3 2 7 7 C 1.53001 * 109.46927 * 186.58132 * 4 3 2 8 8 N 1.46904 * 109.47103 * 179.97438 * 7 4 3 9 9 C 1.46902 * 111.00302 * 123.95738 * 2 1 3 10 10 C 1.53000 * 109.47036 * 74.35086 * 9 2 1 11 11 C 1.50698 * 115.55236 * 53.93339 * 10 9 2 12 12 H 1.07997 * 120.00414 * 268.94753 * 11 10 9 13 13 C 1.37880 * 119.99505 * 88.95240 * 11 10 9 14 14 N 1.31510 * 120.00270 * 3.20776 * 13 11 10 15 15 Si 1.86800 * 119.99857 * 183.21372 * 13 11 10 16 16 H 1.48498 * 109.47175 * 89.99784 * 15 13 11 17 17 H 1.48501 * 109.46989 * 210.00110 * 15 13 11 18 18 H 1.48505 * 109.47047 * 329.99700 * 15 13 11 19 19 C 1.53008 * 117.49501 * 268.26594 * 10 9 2 20 20 C 1.53003 * 117.49937 * 199.60900 * 10 9 2 21 21 H 1.08999 * 109.47221 * 64.12329 * 1 2 3 22 22 H 1.09001 * 109.46809 * 184.13121 * 1 2 3 23 23 H 1.09004 * 109.46906 * 304.12341 * 1 2 3 24 24 H 1.08998 * 109.46485 * 47.22167 * 3 2 1 25 25 H 1.08997 * 109.47365 * 167.22360 * 3 2 1 26 26 H 0.96697 * 114.00313 * 59.99771 * 6 4 3 27 27 H 1.09001 * 109.46870 * 299.99696 * 7 4 3 28 28 H 1.08995 * 109.47038 * 59.99826 * 7 4 3 29 29 H 1.00895 * 111.00254 * 179.97438 * 8 7 4 30 30 H 1.00900 * 111.00111 * 303.95850 * 8 7 4 31 31 H 1.09006 * 109.47058 * 194.34739 * 9 2 1 32 32 H 1.08996 * 109.47089 * 314.35057 * 9 2 1 33 33 H 0.97004 * 120.00399 * 185.01059 * 14 13 11 34 34 H 1.08991 * 117.50066 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49145 * 145.02176 * 19 10 9 36 36 H 1.08997 * 117.50127 * 214.97857 * 20 10 9 37 37 H 1.09002 * 117.49583 * 359.97420 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7795 2.0007 -1.3778 5 1 2.2006 1.3502 -2.1443 6 8 0.3796 2.1674 -1.6111 7 6 2.4712 3.3644 -1.4297 8 7 2.2643 3.9683 -2.7528 9 6 1.9955 -0.7660 1.1375 10 6 1.8151 -2.2620 0.8722 11 6 2.3887 -2.7656 -0.4272 12 1 1.7751 -2.7881 -1.3156 13 6 3.6969 -3.1977 -0.4816 14 7 4.4249 -3.2298 0.6131 15 14 4.4352 -3.7373 -2.1105 16 1 5.0541 -2.5680 -2.7849 17 1 5.4709 -4.7730 -1.8656 18 1 3.3674 -4.2999 -2.9757 19 6 0.5295 -2.9192 1.3788 20 6 1.8616 -3.2039 2.0771 21 1 -0.3633 0.4485 -0.9246 22 1 -0.3633 -1.0250 0.0740 23 1 -0.3633 0.5765 0.8508 24 1 1.4741 1.9607 0.7543 25 1 3.0613 1.3515 0.2273 26 1 -0.0618 2.7360 -0.9654 27 1 2.0500 4.0148 -0.6631 28 1 3.5390 3.2372 -1.2517 29 1 2.7116 4.8707 -2.8123 30 1 2.5886 3.3546 -3.4851 31 1 3.0553 -0.5449 1.2651 32 1 1.4551 -0.4898 2.0429 33 1 5.3650 -3.4639 0.5638 34 1 -0.1877 -2.2858 1.9005 35 1 0.0990 -3.7161 0.7723 36 1 2.3068 -4.1878 1.9299 37 1 2.0212 -2.7577 3.0587 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389369969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = -41.968091 kcal Electronic energy + Delta-G solvation = -16729.568453 eV Core-core repulsion = 14120.753463 eV Total energy + Delta-G solvation = -2608.814991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81490 -38.44976 -36.05771 -34.68770 -33.84112 -30.51259 -28.48961 -27.29452 -26.08495 -23.04425 -22.84329 -22.16663 -20.82358 -17.92529 -17.54023 -17.05060 -16.65187 -16.50174 -15.99845 -15.68537 -15.33907 -14.99541 -14.51004 -14.21241 -13.82667 -13.43370 -13.18494 -13.00253 -12.84986 -12.77249 -12.38898 -12.35518 -12.20576 -11.94907 -11.77121 -11.37234 -10.84927 -10.62071 -10.21283 -9.85408 -9.55951 -8.85381 -7.99847 -6.06210 1.42434 1.43849 1.53045 2.49430 3.02817 3.28117 3.51177 3.63491 3.83470 4.06108 4.17103 4.32867 4.37473 4.48840 4.52555 4.65802 4.68893 4.75677 4.76622 4.81565 4.92161 5.00745 5.15418 5.23346 5.31679 5.43437 5.69630 5.74826 5.88629 6.17089 6.39103 6.51496 6.59265 6.63373 6.96597 6.98942 7.58069 9.08213 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022739 B = 0.008695 C = 0.007030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.065652 B = 3219.623917 C = 3981.903949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.533 5.533 3 C 0.029 3.971 4 C 0.125 3.875 5 H 0.077 0.923 6 O -0.554 6.554 7 C 0.039 3.961 8 N -0.849 5.849 9 C 0.117 3.883 10 C 0.027 3.973 11 C -0.467 4.467 12 H 0.043 0.957 13 C 0.022 3.978 14 N -0.915 5.915 15 Si 0.941 3.059 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.192 4.192 20 C -0.157 4.157 21 H 0.090 0.910 22 H 0.051 0.949 23 H 0.021 0.979 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.378 0.622 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.350 0.650 30 H 0.343 0.657 31 H 0.042 0.958 32 H 0.013 0.987 33 H 0.255 0.745 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 12.845 -1.088 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.256 5.256 3 C -0.100 4.100 4 C 0.065 3.935 5 H 0.095 0.905 6 O -0.360 6.360 7 C -0.093 4.093 8 N -0.379 5.379 9 C -0.011 4.011 10 C 0.026 3.974 11 C -0.505 4.505 12 H 0.061 0.939 13 C -0.176 4.176 14 N -0.555 5.555 15 Si 0.768 3.232 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.230 4.230 20 C -0.195 4.195 21 H 0.109 0.891 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.226 0.774 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.449 12.098 -1.763 13.010 hybrid contribution 1.527 0.029 0.519 1.613 sum -2.922 12.127 -1.244 12.536 Atomic orbital electron populations 1.22603 0.86896 1.01129 1.01408 1.61601 1.08374 1.11829 1.43788 1.22799 1.00259 0.89535 0.97421 1.21736 0.82008 0.94189 0.95543 0.90530 1.86583 1.20618 1.71971 1.56838 1.22358 0.98522 0.95652 0.92763 1.58566 1.67441 1.08088 1.03831 1.21425 0.97042 0.93621 0.89054 1.18950 0.95220 0.89789 0.93452 1.20459 0.96582 1.39325 0.94135 0.93916 1.25520 0.97940 0.95757 0.98428 1.70110 1.06886 1.50775 1.27737 0.85821 0.78103 0.77825 0.81439 1.20428 1.21439 1.19891 1.23018 0.91021 1.04024 1.04894 1.22364 0.99782 1.01176 0.96177 0.89121 0.93053 0.96080 0.93600 0.91464 0.77373 0.89579 0.94435 0.83628 0.84500 0.93964 0.96909 0.93594 0.89618 0.91142 0.92314 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 8.91 127.69 1.14 2.08 16 2 N -0.53 -20.74 4.32 -922.44 -3.99 -24.73 16 3 C 0.03 0.89 4.79 86.30 0.41 1.30 16 4 C 0.13 3.44 3.37 30.59 0.10 3.54 16 5 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 6 O -0.55 -14.96 10.25 -148.98 -1.53 -16.49 16 7 C 0.04 0.81 6.45 86.30 0.56 1.37 16 8 N -0.85 -16.72 9.49 -186.71 -1.77 -18.49 16 9 C 0.12 5.13 4.90 86.30 0.42 5.56 16 10 C 0.03 1.32 1.35 -52.92 -0.07 1.24 16 11 C -0.47 -25.98 8.53 25.60 0.22 -25.76 16 12 H 0.04 2.46 7.82 -2.91 -0.02 2.43 16 13 C 0.02 1.21 5.42 84.66 0.46 1.67 16 14 N -0.92 -52.95 12.38 21.45 0.27 -52.68 16 15 Si 0.94 44.89 29.54 68.60 2.03 46.92 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 18 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 19 C -0.19 -8.42 8.44 30.62 0.26 -8.16 16 20 C -0.16 -7.57 9.01 30.62 0.28 -7.30 16 21 H 0.09 3.00 5.62 -2.39 -0.01 2.98 16 22 H 0.05 1.94 5.94 -2.39 -0.01 1.92 16 23 H 0.02 0.63 8.02 -2.39 -0.02 0.61 16 24 H 0.05 1.21 7.96 -2.39 -0.02 1.19 16 25 H 0.07 2.17 7.68 -2.39 -0.02 2.15 16 26 H 0.38 7.54 9.05 -74.06 -0.67 6.87 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.35 5.24 9.08 -89.70 -0.81 4.43 16 30 H 0.34 6.87 8.99 -89.69 -0.81 6.06 16 31 H 0.04 2.04 7.67 -2.38 -0.02 2.02 16 32 H 0.01 0.53 7.96 -2.39 -0.02 0.51 16 33 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 34 H 0.09 3.28 7.94 -2.39 -0.02 3.26 16 35 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.06 3.13 8.00 -2.39 -0.02 3.11 16 37 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -62.84 299.23 -2.44 -65.28 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -1.22 Total: 24.66 kcal Atomic # 6 Polarization: -28.24 SS G_CDS: 3.77 Total: -24.47 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -5.49 Total: -95.90 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.53 Total: -16.49 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -62.84 -2.44 -65.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389369969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.314 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds