Wall clock time and date at job start Mon Mar 30 2020 03:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99471 * 2 1 4 4 C 1.46900 * 110.99779 * 123.95214 * 2 1 3 5 5 C 1.52997 * 109.47237 * 66.05160 * 4 2 1 6 6 O 1.42898 * 109.47286 * 64.99227 * 5 4 2 7 7 N 1.46300 * 114.00510 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00559 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47332 * 185.40546 * 8 7 6 10 10 C 1.50705 * 115.55040 * 294.80522 * 9 8 7 11 11 H 1.07997 * 120.00208 * 95.20446 * 10 9 8 12 12 C 1.37876 * 119.99623 * 274.92814 * 10 9 8 13 13 N 1.31511 * 120.00086 * 355.42140 * 12 10 9 14 14 Si 1.86801 * 119.99963 * 175.42150 * 12 10 9 15 15 H 1.48507 * 109.46997 * 59.99709 * 14 12 10 16 16 H 1.48494 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46974 * 300.00137 * 14 12 10 18 18 C 1.52999 * 117.49758 * 80.47246 * 9 8 7 19 19 C 1.53001 * 117.50020 * 149.13329 * 9 8 7 20 20 H 1.09001 * 109.47626 * 296.03930 * 1 2 3 21 21 H 1.08999 * 109.47470 * 56.04964 * 1 2 3 22 22 H 1.09011 * 109.46920 * 176.04662 * 1 2 3 23 23 H 1.09002 * 109.46936 * 183.94948 * 3 2 1 24 24 H 1.08998 * 109.47218 * 303.95229 * 3 2 1 25 25 H 1.09003 * 109.47189 * 63.95840 * 3 2 1 26 26 H 1.08996 * 109.47264 * 306.04552 * 4 2 1 27 27 H 1.09007 * 109.46552 * 186.04829 * 4 2 1 28 28 H 1.09007 * 109.47033 * 304.99756 * 5 4 2 29 29 H 1.09000 * 109.47722 * 184.99630 * 5 4 2 30 30 H 1.00898 * 111.00196 * 303.96343 * 7 6 5 31 31 H 1.09003 * 109.47036 * 65.40708 * 8 7 6 32 32 H 1.08997 * 109.46749 * 305.40798 * 8 7 6 33 33 H 0.97008 * 119.99957 * 185.00266 * 13 12 10 34 34 H 1.09001 * 117.49905 * 215.00264 * 18 9 8 35 35 H 1.09000 * 117.50194 * 0.02565 * 18 9 8 36 36 H 1.08998 * 117.49766 * 359.97438 * 19 9 8 37 37 H 1.08998 * 117.49833 * 144.97765 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 8 2.2956 -2.7695 -0.1800 7 7 2.0159 -4.1830 -0.4333 8 6 2.7301 -4.6554 -1.6269 9 6 2.3098 -6.0935 -1.9370 10 6 2.6961 -7.1206 -0.9041 11 1 1.9906 -7.4087 -0.1388 12 6 3.9482 -7.6968 -0.9396 13 7 4.7726 -7.4180 -1.9256 14 14 4.4736 -8.8734 0.4128 15 1 3.5460 -10.0326 0.4483 16 1 5.8538 -9.3512 0.1446 17 1 4.4387 -8.1713 1.7209 18 6 0.9864 -6.2987 -2.6769 19 6 2.3137 -6.5301 -3.4034 20 1 -0.3634 0.4511 0.9233 21 1 -0.3634 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0827 1.3433 -0.0708 24 1 1.5897 1.9163 -0.8524 25 1 1.7043 1.8724 0.9233 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6610 1.1756 28 1 0.5532 -2.3389 0.8432 29 1 1.9439 -2.7964 1.8557 30 1 2.2449 -4.7468 0.3715 31 1 3.8043 -4.6222 -1.4445 32 1 2.4855 -4.0146 -2.4740 33 1 5.6244 -7.8777 -1.9903 34 1 0.3951 -7.1766 -2.4166 35 1 0.4154 -5.4092 -2.9431 36 1 2.6154 -5.7926 -4.1472 37 1 2.5961 -7.5601 -3.6211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393361444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:07 Heat of formation + Delta-G solvation = 29.961719 kcal Electronic energy + Delta-G solvation = -16078.032644 eV Core-core repulsion = 13472.336764 eV Total energy + Delta-G solvation = -2605.695880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -37.84443 -36.80175 -35.44145 -31.96604 -31.35434 -28.83849 -27.59499 -25.56337 -23.93245 -23.50353 -20.93419 -20.81159 -19.04614 -16.53221 -15.95520 -15.94264 -15.05532 -14.98230 -14.64938 -14.12182 -13.87398 -13.32931 -13.16839 -12.56744 -12.36534 -12.32244 -11.74213 -11.59539 -11.50575 -11.35621 -10.95515 -10.93597 -10.77405 -10.45876 -10.09859 -9.76972 -9.38710 -8.86651 -8.41370 -8.31309 -8.13390 -7.61192 -6.03401 -4.12767 3.28242 3.34159 3.35949 3.47054 3.95513 4.37980 5.03580 5.10539 5.23491 5.25168 5.31178 5.43960 5.53587 5.55877 5.59810 5.73119 5.80342 5.95430 6.03756 6.11553 6.30635 6.51151 6.59697 6.81009 6.85382 6.91768 7.03376 7.05926 7.21206 7.49729 7.58279 7.71864 7.86319 8.18120 8.45362 8.91034 9.53919 11.03518 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.005736 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.341026 B = 4879.906193 C = 5304.365328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.537 5.537 3 C 0.026 3.974 4 C 0.059 3.941 5 C 0.067 3.933 6 O -0.256 6.256 7 N -0.494 5.494 8 C 0.099 3.901 9 C 0.045 3.955 10 C -0.501 4.501 11 H 0.061 0.939 12 C 0.071 3.929 13 N -0.877 5.877 14 Si 0.890 3.110 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.202 4.202 19 C -0.147 4.147 20 H 0.020 0.980 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.336 0.664 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 12.065 4.984 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.261 5.261 3 C -0.122 4.122 4 C -0.070 4.070 5 C -0.011 4.011 6 O -0.262 6.262 7 N -0.166 5.166 8 C -0.030 4.030 9 C 0.044 3.956 10 C -0.539 4.539 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.513 5.513 14 Si 0.717 3.283 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.239 4.239 19 C -0.185 4.185 20 H 0.038 0.962 21 H 0.084 0.916 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.039 0.961 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.151 0.849 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.471 12.120 4.040 13.898 hybrid contribution 0.987 -0.497 1.920 2.216 sum -4.484 11.624 5.960 13.811 Atomic orbital electron populations 1.22452 0.87407 1.02899 0.99828 1.61876 1.07923 1.13151 1.43169 1.22376 1.00897 0.88949 1.00018 1.22179 1.00982 0.92714 0.91140 1.22280 0.97515 0.92160 0.89184 1.90805 1.71113 1.18342 1.45941 1.66878 1.54698 0.87811 1.07245 1.21696 0.96197 0.95190 0.89914 1.18638 0.94567 0.90464 0.91941 1.20441 0.98320 1.22655 1.12460 0.92123 1.25025 0.96355 0.96230 0.95654 1.69996 1.09807 1.41120 1.30400 0.86704 0.77690 0.81321 0.82548 1.20195 1.21312 1.20208 1.22934 0.91543 1.00820 1.08588 1.22500 0.99137 1.00993 0.95873 0.96161 0.91555 0.90565 0.91406 0.91472 0.96147 0.93637 0.90187 0.92969 0.93699 0.84874 0.94204 0.92873 0.92909 0.90704 0.91421 0.92013 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.33 60.07 0.56 0.82 16 2 N -0.54 -7.17 4.97 -251.25 -1.25 -8.42 16 3 C 0.03 0.27 9.57 60.06 0.57 0.85 16 4 C 0.06 0.76 5.34 -3.83 -0.02 0.74 16 5 C 0.07 1.03 6.44 37.16 0.24 1.27 16 6 O -0.26 -5.13 11.23 -13.92 -0.16 -5.29 16 7 N -0.49 -10.66 7.30 -10.37 -0.08 -10.74 16 8 C 0.10 2.37 6.07 -3.83 -0.02 2.35 16 9 C 0.05 1.12 1.65 -155.66 -0.26 0.87 16 10 C -0.50 -13.41 8.33 -34.44 -0.29 -13.69 16 11 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 12 C 0.07 1.92 5.43 -17.82 -0.10 1.82 16 13 N -0.88 -24.72 12.65 55.43 0.70 -24.02 16 14 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 18 C -0.20 -4.57 9.96 -26.69 -0.27 -4.83 16 19 C -0.15 -3.54 9.14 -26.69 -0.24 -3.78 16 20 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 21 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 22 H 0.08 0.96 6.37 -51.92 -0.33 0.63 16 23 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 27 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 28 H 0.05 0.79 6.34 -51.92 -0.33 0.46 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.34 7.20 8.49 -39.29 -0.33 6.87 16 31 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.25 8.09 -51.93 -0.42 0.83 16 33 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 34 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 35 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -28.96 309.38 -7.40 -36.36 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.45 Total: 5.25 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 0.18 Total: -13.59 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.62 Total: -43.18 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.16 Total: -5.29 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.96 -7.40 -36.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393361444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.327 kcal (2) G-P(sol) polarization free energy of solvation -28.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds