Wall clock time and date at job start Mon Mar 30 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99471 * 2 1 4 4 C 1.46900 * 110.99779 * 123.95214 * 2 1 3 5 5 C 1.52997 * 109.47237 * 66.05160 * 4 2 1 6 6 O 1.42898 * 109.47286 * 64.99227 * 5 4 2 7 7 N 1.46300 * 114.00510 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00559 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47332 * 185.40546 * 8 7 6 10 10 C 1.50705 * 115.55040 * 294.80522 * 9 8 7 11 11 H 1.07997 * 120.00208 * 95.20446 * 10 9 8 12 12 C 1.37876 * 119.99623 * 274.92814 * 10 9 8 13 13 N 1.31511 * 120.00086 * 355.42140 * 12 10 9 14 14 Si 1.86801 * 119.99963 * 175.42150 * 12 10 9 15 15 H 1.48507 * 109.46997 * 59.99709 * 14 12 10 16 16 H 1.48494 * 109.47222 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46974 * 300.00137 * 14 12 10 18 18 C 1.52999 * 117.49758 * 80.47246 * 9 8 7 19 19 C 1.53001 * 117.50020 * 149.13329 * 9 8 7 20 20 H 1.09001 * 109.47626 * 296.03930 * 1 2 3 21 21 H 1.08999 * 109.47470 * 56.04964 * 1 2 3 22 22 H 1.09011 * 109.46920 * 176.04662 * 1 2 3 23 23 H 1.09002 * 109.46936 * 183.94948 * 3 2 1 24 24 H 1.08998 * 109.47218 * 303.95229 * 3 2 1 25 25 H 1.09003 * 109.47189 * 63.95840 * 3 2 1 26 26 H 1.08996 * 109.47264 * 306.04552 * 4 2 1 27 27 H 1.09007 * 109.46552 * 186.04829 * 4 2 1 28 28 H 1.09007 * 109.47033 * 304.99756 * 5 4 2 29 29 H 1.09000 * 109.47722 * 184.99630 * 5 4 2 30 30 H 1.00898 * 111.00196 * 303.96343 * 7 6 5 31 31 H 1.09003 * 109.47036 * 65.40708 * 8 7 6 32 32 H 1.08997 * 109.46749 * 305.40798 * 8 7 6 33 33 H 0.97008 * 119.99957 * 185.00266 * 13 12 10 34 34 H 1.09001 * 117.49905 * 215.00264 * 18 9 8 35 35 H 1.09000 * 117.50194 * 0.02565 * 18 9 8 36 36 H 1.08998 * 117.49766 * 359.97438 * 19 9 8 37 37 H 1.08998 * 117.49833 * 144.97765 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9704 6 8 2.2956 -2.7695 -0.1800 7 7 2.0159 -4.1830 -0.4333 8 6 2.7301 -4.6554 -1.6269 9 6 2.3098 -6.0935 -1.9370 10 6 2.6961 -7.1206 -0.9041 11 1 1.9906 -7.4087 -0.1388 12 6 3.9482 -7.6968 -0.9396 13 7 4.7726 -7.4180 -1.9256 14 14 4.4736 -8.8734 0.4128 15 1 3.5460 -10.0326 0.4483 16 1 5.8538 -9.3512 0.1446 17 1 4.4387 -8.1713 1.7209 18 6 0.9864 -6.2987 -2.6769 19 6 2.3137 -6.5301 -3.4034 20 1 -0.3634 0.4511 0.9233 21 1 -0.3634 0.5739 -0.8524 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0827 1.3433 -0.0708 24 1 1.5897 1.9163 -0.8524 25 1 1.7043 1.8724 0.9233 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6610 1.1756 28 1 0.5532 -2.3389 0.8432 29 1 1.9439 -2.7964 1.8557 30 1 2.2449 -4.7468 0.3715 31 1 3.8043 -4.6222 -1.4445 32 1 2.4855 -4.0146 -2.4740 33 1 5.6244 -7.8777 -1.9903 34 1 0.3951 -7.1766 -2.4166 35 1 0.4154 -5.4092 -2.9431 36 1 2.6154 -5.7926 -4.1472 37 1 2.5961 -7.5601 -3.6211 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393361444.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:06 Heat of formation + Delta-G solvation = 10.636840 kcal Electronic energy + Delta-G solvation = -16078.870633 eV Core-core repulsion = 13472.336764 eV Total energy + Delta-G solvation = -2606.533870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02064 -38.55512 -36.90405 -34.01250 -32.95514 -30.10281 -28.45440 -27.60670 -25.46114 -24.85004 -22.82240 -21.87665 -20.98672 -18.09239 -17.87105 -17.05179 -16.63172 -16.29834 -16.03950 -15.70629 -15.45970 -14.74464 -14.68014 -14.20377 -13.61090 -13.28735 -13.22107 -13.07752 -12.97726 -12.79139 -12.60182 -12.52099 -12.35614 -11.99876 -11.91274 -11.37509 -11.15921 -10.85456 -10.40886 -10.03353 -9.38091 -9.19320 -8.09026 -6.24032 1.43851 1.44421 1.51986 1.92700 2.42867 3.04766 3.17887 3.55879 3.99920 4.14307 4.23953 4.33648 4.39149 4.50447 4.55299 4.58039 4.64406 4.69619 4.73407 4.78479 4.88489 4.93016 5.01884 5.06009 5.07524 5.11765 5.29424 5.60664 5.68722 5.77788 5.88732 6.10754 6.16465 6.41571 6.56327 6.85232 7.45639 8.97552 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032728 B = 0.005736 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.341026 B = 4879.906193 C = 5304.365328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.065 3.935 5 C 0.059 3.941 6 O -0.269 6.269 7 N -0.493 5.493 8 C 0.116 3.884 9 C 0.021 3.979 10 C -0.511 4.511 11 H 0.058 0.942 12 C 0.025 3.975 13 N -0.908 5.908 14 Si 0.952 3.048 15 H -0.271 1.271 16 H -0.288 1.288 17 H -0.270 1.270 18 C -0.177 4.177 19 C -0.151 4.151 20 H 0.038 0.962 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.334 0.666 31 H 0.007 0.993 32 H 0.053 0.947 33 H 0.260 0.740 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 12.881 6.139 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.293 5.293 3 C -0.120 4.120 4 C -0.064 4.064 5 C -0.019 4.019 6 O -0.277 6.277 7 N -0.163 5.163 8 C -0.014 4.014 9 C 0.019 3.981 10 C -0.548 4.548 11 H 0.076 0.924 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.777 3.223 15 H -0.196 1.196 16 H -0.214 1.214 17 H -0.195 1.195 18 C -0.214 4.214 19 C -0.190 4.190 20 H 0.056 0.944 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.342 12.937 5.205 15.319 hybrid contribution 1.197 -0.658 1.580 2.089 sum -5.144 12.279 6.785 14.942 Atomic orbital electron populations 1.22424 0.86599 1.02227 1.01096 1.61849 1.08972 1.14755 1.43721 1.22384 1.00690 0.87776 1.01183 1.22139 1.00975 0.90941 0.92376 1.22611 0.97495 0.93794 0.87973 1.90790 1.72048 1.16687 1.48216 1.66761 1.53846 0.89130 1.06530 1.21385 0.94239 0.94822 0.90945 1.18753 0.96564 0.90746 0.91997 1.20679 0.98451 1.22945 1.12760 0.92364 1.25727 0.96389 0.97909 0.97529 1.70115 1.10068 1.42219 1.32087 0.85720 0.77098 0.79420 0.80039 1.19620 1.21391 1.19487 1.22912 0.90680 1.01524 1.06290 1.22412 1.00602 1.00058 0.95909 0.94382 0.90846 0.92104 0.91696 0.90764 0.94515 0.90840 0.90579 0.92636 0.92568 0.85044 0.97448 0.92866 0.93094 0.90317 0.89601 0.91131 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.33 127.69 1.19 1.71 16 2 N -0.57 -14.10 4.97 -948.82 -4.71 -18.82 16 3 C 0.03 0.52 9.57 127.69 1.22 1.74 16 4 C 0.06 1.54 5.34 86.30 0.46 2.01 16 5 C 0.06 1.73 6.44 71.98 0.46 2.20 16 6 O -0.27 -10.63 11.23 -50.16 -0.56 -11.19 16 7 N -0.49 -21.06 7.30 -186.73 -1.36 -22.42 16 8 C 0.12 5.57 6.07 86.30 0.52 6.09 16 9 C 0.02 1.02 1.65 -52.93 -0.09 0.93 16 10 C -0.51 -27.29 8.33 25.60 0.21 -27.07 16 11 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 12 C 0.03 1.36 5.43 84.65 0.46 1.82 16 13 N -0.91 -51.76 12.65 21.45 0.27 -51.49 16 14 Si 0.95 42.60 29.54 68.60 2.03 44.62 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 C -0.18 -7.80 9.96 30.62 0.30 -7.50 16 19 C -0.15 -7.30 9.14 30.62 0.28 -7.02 16 20 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 21 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 22 H 0.06 1.45 6.37 -2.38 -0.02 1.44 16 23 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 24 H 0.07 1.28 8.12 -2.39 -0.02 1.26 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.07 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.08 1.86 8.06 -2.38 -0.02 1.84 16 28 H 0.06 1.59 6.34 -2.38 -0.02 1.58 16 29 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.33 14.26 8.49 -89.70 -0.76 13.50 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 32 H 0.05 2.50 8.09 -2.39 -0.02 2.48 16 33 H 0.26 14.24 8.32 -92.70 -0.77 13.47 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.45 16 36 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.06 3.34 8.14 -2.39 -0.02 3.32 16 Total: -1.00 -60.63 309.38 0.96 -59.67 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.26 Total: 24.72 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 5.03 Total: -25.10 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -5.80 Total: -92.73 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: -0.56 Total: -11.19 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -60.63 0.96 -59.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393361444.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.311 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds