Wall clock time and date at job start Mon Mar 30 2020 02:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47136 * 2 1 4 4 C 1.42899 * 113.99943 * 180.02562 * 3 2 1 5 5 H 1.08991 * 110.90358 * 26.13448 * 4 3 2 6 6 C 1.55116 * 111.14569 * 262.24165 * 4 3 2 7 7 N 1.47838 * 104.90492 * 205.05306 * 6 4 3 8 8 C 1.46899 * 111.00264 * 146.24195 * 7 6 4 9 9 C 1.50700 * 109.47247 * 49.15614 * 8 7 6 10 10 H 1.08008 * 119.99604 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00257 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99811 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00228 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47070 * 89.99484 * 13 11 9 15 15 H 1.48497 * 109.47159 * 210.00069 * 13 11 9 16 16 H 1.48500 * 109.46675 * 329.99335 * 13 11 9 17 17 C 1.47443 * 108.57161 * 23.97226 * 7 6 4 18 18 C 1.54320 * 107.22835 * 359.01096 * 17 7 6 19 19 H 1.09003 * 110.70720 * 96.27609 * 18 17 7 20 20 C 1.53006 * 110.70750 * 219.33245 * 18 17 7 21 21 N 1.46898 * 109.47006 * 291.19686 * 20 18 17 22 22 H 1.08998 * 109.47214 * 300.00170 * 1 2 3 23 23 H 1.08999 * 109.47083 * 59.99692 * 1 2 3 24 24 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46880 * 240.00203 * 2 1 3 26 26 H 1.08992 * 109.46810 * 120.00048 * 2 1 3 27 27 H 1.08993 * 110.42456 * 86.13257 * 6 4 3 28 28 H 1.09001 * 110.21396 * 323.86297 * 6 4 3 29 29 H 1.09005 * 109.47103 * 169.15479 * 8 7 6 30 30 H 1.08997 * 109.47142 * 289.15626 * 8 7 6 31 31 H 0.96997 * 120.00091 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.88894 * 239.60996 * 17 7 6 33 33 H 1.08997 * 109.89278 * 118.41810 * 17 7 6 34 34 H 1.09001 * 109.47002 * 51.19468 * 20 18 17 35 35 H 1.08993 * 109.46955 * 171.19906 * 20 18 17 36 36 H 1.00906 * 111.00348 * 56.04933 * 21 20 18 37 37 H 1.00898 * 110.99876 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8905 0.5796 -0.4494 6 6 3.9739 1.6988 1.4327 7 7 5.2678 2.3874 1.2394 8 6 5.5207 3.3466 2.3228 9 6 5.2914 2.6749 3.6522 10 1 4.9884 1.6388 3.6885 11 6 5.4682 3.3829 4.8220 12 7 5.8376 4.6443 4.7777 13 14 5.1846 2.5500 6.4699 14 1 6.4533 1.9381 6.9400 15 1 4.7234 3.5560 7.4600 16 1 4.1515 1.4940 6.3193 17 6 5.2489 3.0632 -0.0709 18 6 3.8855 2.7546 -0.7247 19 1 3.1794 3.5652 -0.5447 20 6 4.0492 2.5058 -2.2255 21 7 4.4191 3.7613 -2.8925 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.1225 0.7489 1.9462 28 1 3.2874 2.3318 1.9950 29 1 6.5516 3.6960 2.2654 30 1 4.8434 4.1947 2.2227 31 1 5.9624 5.1423 5.6006 32 1 6.0553 2.6811 -0.6969 33 1 5.3599 4.1389 0.0650 34 1 4.8314 1.7641 -2.3877 35 1 3.1093 2.1388 -2.6376 36 1 5.2533 4.1556 -2.4841 37 1 4.5336 3.6232 -3.8854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405825202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:46 Heat of formation + Delta-G solvation = -49.482127 kcal Electronic energy + Delta-G solvation = -16513.877642 eV Core-core repulsion = 13904.736818 eV Total energy + Delta-G solvation = -2609.140824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.16631 -36.75989 -34.75657 -32.70588 -31.38016 -29.79779 -27.73564 -26.58189 -23.73374 -22.90227 -22.02584 -20.33312 -19.59251 -16.92094 -16.34178 -15.94275 -15.33759 -14.97846 -14.66344 -14.20609 -13.78664 -13.62740 -12.95248 -12.85360 -12.57410 -12.35084 -12.13259 -11.86198 -11.55969 -11.22356 -11.05963 -10.86874 -10.80790 -10.60687 -10.43325 -10.17325 -9.79390 -9.16421 -9.06885 -8.67376 -8.47214 -7.24684 -6.03637 -4.05199 3.31912 3.37613 3.41109 3.79431 4.42844 4.57408 4.95682 5.01617 5.10586 5.16557 5.25063 5.31607 5.35597 5.43838 5.51109 5.62614 5.70352 5.82988 5.94993 5.97346 6.12085 6.16384 6.30937 6.51931 6.59719 6.72140 7.13137 7.22463 7.38817 7.44645 7.53840 7.76124 8.00140 8.19003 8.51345 9.01757 9.59163 11.07725 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.007612 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.115396 B = 3677.566203 C = 4705.307549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.376 6.376 4 C 0.079 3.921 5 H 0.069 0.931 6 C 0.046 3.954 7 N -0.527 5.527 8 C 0.188 3.812 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.047 3.953 18 C -0.105 4.105 19 H 0.090 0.910 20 C 0.076 3.924 21 N -0.851 5.851 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.033 0.967 30 H -0.006 1.006 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.343 0.657 37 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -7.094 -12.503 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.295 6.295 4 C 0.020 3.980 5 H 0.087 0.913 6 C -0.083 4.083 7 N -0.253 5.253 8 C 0.062 3.938 9 C -0.554 4.554 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.082 4.082 18 C -0.125 4.125 19 H 0.108 0.892 20 C -0.055 4.055 21 N -0.380 5.380 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.155 0.845 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.131 -6.866 -12.097 15.201 hybrid contribution 0.346 -0.458 0.752 0.947 sum -5.785 -7.325 -11.345 14.691 Atomic orbital electron populations 1.21733 0.94105 1.01843 1.03065 1.22460 0.95288 0.84383 0.99857 1.87905 1.20889 1.25773 1.94926 1.23413 0.80363 0.97280 0.96933 0.91326 1.23185 0.91075 0.99817 0.94178 1.63688 1.29686 1.29943 1.01976 1.19945 0.96575 0.89373 0.87863 1.21217 1.46091 0.97818 0.90240 0.91919 1.24987 0.95278 0.94845 0.99364 1.69958 1.47345 1.08382 1.27884 0.86505 0.78479 0.79117 0.83379 1.20590 1.21235 1.19870 1.22815 0.94547 0.98407 0.92383 1.22468 0.98548 0.97946 0.93490 0.89164 1.21736 0.99695 0.90254 0.93808 1.58705 1.43191 1.28669 1.07440 0.91749 0.92113 0.91446 0.93866 0.93271 0.91166 0.92154 0.94931 0.98786 0.92874 0.92071 0.92636 0.95557 0.91176 0.84462 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.23 16 2 C 0.06 0.73 6.49 37.16 0.24 0.97 16 3 O -0.38 -6.17 10.16 -35.23 -0.36 -6.53 16 4 C 0.08 1.32 3.00 -24.48 -0.07 1.25 16 5 H 0.07 1.05 7.74 -51.93 -0.40 0.64 16 6 C 0.05 0.95 5.13 -2.19 -0.01 0.94 16 7 N -0.53 -11.72 5.31 -232.56 -1.23 -12.95 16 8 C 0.19 5.02 4.59 -4.98 -0.02 5.00 16 9 C -0.52 -14.69 8.35 -34.44 -0.29 -14.98 16 10 H 0.06 1.76 6.67 -52.48 -0.35 1.41 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 C 0.05 0.86 5.75 -2.83 -0.02 0.84 16 18 C -0.10 -1.71 2.91 -88.79 -0.26 -1.97 16 19 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 20 C 0.08 1.00 6.17 -3.82 -0.02 0.98 16 21 N -0.85 -10.19 9.62 -10.37 -0.10 -10.29 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 1.44 7.69 -51.93 -0.40 1.05 16 28 H 0.06 1.40 7.55 -51.93 -0.39 1.01 16 29 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 30 H -0.01 -0.16 7.96 -51.93 -0.41 -0.57 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.06 1.01 7.73 -51.93 -0.40 0.61 16 33 H 0.06 1.06 7.49 -51.93 -0.39 0.67 16 34 H 0.03 0.33 8.00 -51.93 -0.42 -0.09 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.34 4.00 8.31 -39.29 -0.33 3.68 16 37 H 0.34 3.19 9.08 -39.29 -0.36 2.83 16 LS Contribution 298.99 15.07 4.51 4.51 Total: -1.00 -30.81 298.99 -8.00 -38.81 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.36 Total: 2.52 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.17 Total: -6.67 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -0.60 Total: -49.49 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.36 Total: -6.53 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.81 -8.00 -38.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405825202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.671 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds