Wall clock time and date at job start Mon Mar 30 2020 02:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47136 * 2 1 4 4 C 1.42899 * 113.99943 * 180.02562 * 3 2 1 5 5 H 1.08991 * 110.90358 * 26.13448 * 4 3 2 6 6 C 1.55116 * 111.14569 * 262.24165 * 4 3 2 7 7 N 1.47838 * 104.90492 * 205.05306 * 6 4 3 8 8 C 1.46899 * 111.00264 * 146.24195 * 7 6 4 9 9 C 1.50700 * 109.47247 * 49.15614 * 8 7 6 10 10 H 1.08008 * 119.99604 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00257 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99811 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00228 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47070 * 89.99484 * 13 11 9 15 15 H 1.48497 * 109.47159 * 210.00069 * 13 11 9 16 16 H 1.48500 * 109.46675 * 329.99335 * 13 11 9 17 17 C 1.47443 * 108.57161 * 23.97226 * 7 6 4 18 18 C 1.54320 * 107.22835 * 359.01096 * 17 7 6 19 19 H 1.09003 * 110.70720 * 96.27609 * 18 17 7 20 20 C 1.53006 * 110.70750 * 219.33245 * 18 17 7 21 21 N 1.46898 * 109.47006 * 291.19686 * 20 18 17 22 22 H 1.08998 * 109.47214 * 300.00170 * 1 2 3 23 23 H 1.08999 * 109.47083 * 59.99692 * 1 2 3 24 24 H 1.08999 * 109.47295 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46880 * 240.00203 * 2 1 3 26 26 H 1.08992 * 109.46810 * 120.00048 * 2 1 3 27 27 H 1.08993 * 110.42456 * 86.13257 * 6 4 3 28 28 H 1.09001 * 110.21396 * 323.86297 * 6 4 3 29 29 H 1.09005 * 109.47103 * 169.15479 * 8 7 6 30 30 H 1.08997 * 109.47142 * 289.15626 * 8 7 6 31 31 H 0.96997 * 120.00091 * 180.02562 * 12 11 9 32 32 H 1.08999 * 109.88894 * 239.60996 * 17 7 6 33 33 H 1.08997 * 109.89278 * 118.41810 * 17 7 6 34 34 H 1.09001 * 109.47002 * 51.19468 * 20 18 17 35 35 H 1.08993 * 109.46955 * 171.19906 * 20 18 17 36 36 H 1.00906 * 111.00348 * 56.04933 * 21 20 18 37 37 H 1.00898 * 110.99876 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8905 0.5796 -0.4494 6 6 3.9739 1.6988 1.4327 7 7 5.2678 2.3874 1.2394 8 6 5.5207 3.3466 2.3228 9 6 5.2914 2.6749 3.6522 10 1 4.9884 1.6388 3.6885 11 6 5.4682 3.3829 4.8220 12 7 5.8376 4.6443 4.7777 13 14 5.1846 2.5500 6.4699 14 1 6.4533 1.9381 6.9400 15 1 4.7234 3.5560 7.4600 16 1 4.1515 1.4940 6.3193 17 6 5.2489 3.0632 -0.0709 18 6 3.8855 2.7546 -0.7247 19 1 3.1794 3.5652 -0.5447 20 6 4.0492 2.5058 -2.2255 21 7 4.4191 3.7613 -2.8925 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 4.1225 0.7489 1.9462 28 1 3.2874 2.3318 1.9950 29 1 6.5516 3.6960 2.2654 30 1 4.8434 4.1947 2.2227 31 1 5.9624 5.1423 5.6006 32 1 6.0553 2.6811 -0.6969 33 1 5.3599 4.1389 0.0650 34 1 4.8314 1.7641 -2.3877 35 1 3.1093 2.1388 -2.6376 36 1 5.2533 4.1556 -2.4841 37 1 4.5336 3.6232 -3.8854 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405825202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:45 Heat of formation + Delta-G solvation = -74.052426 kcal Electronic energy + Delta-G solvation = -16514.943090 eV Core-core repulsion = 13904.736818 eV Total energy + Delta-G solvation = -2610.206272 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61850 -38.10824 -36.13404 -34.67856 -32.59902 -31.20224 -29.26594 -28.46824 -25.31901 -24.12616 -23.46613 -21.95549 -21.03943 -18.59848 -18.05782 -17.22822 -16.64723 -16.45433 -16.07226 -15.63781 -15.36559 -15.10874 -14.34843 -14.24672 -14.13183 -13.89223 -13.35700 -13.28329 -13.14488 -12.85765 -12.66025 -12.42305 -12.31984 -12.11401 -11.95018 -11.66848 -11.57789 -11.19751 -10.68225 -10.43392 -9.60764 -9.10407 -8.25663 -6.36177 1.37825 1.39981 1.50741 2.36839 2.57490 3.07686 3.41378 3.49535 3.66283 3.83696 3.95216 4.17837 4.24177 4.32425 4.42207 4.49805 4.52420 4.61095 4.81028 4.82703 4.85566 4.95149 5.00499 5.06081 5.11401 5.18083 5.30179 5.31011 5.58959 5.90382 6.15116 6.21284 6.34218 6.51934 6.62468 6.79438 7.33743 8.86599 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.007612 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.115396 B = 3677.566203 C = 4705.307549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.046 3.954 3 O -0.394 6.394 4 C 0.095 3.905 5 H 0.096 0.904 6 C 0.045 3.955 7 N -0.533 5.533 8 C 0.204 3.796 9 C -0.533 4.533 10 H 0.064 0.936 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.971 3.029 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.265 1.265 17 C 0.047 3.953 18 C -0.096 4.096 19 H 0.064 0.936 20 C 0.087 3.913 21 N -0.859 5.859 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.007 0.993 30 H -0.039 1.039 31 H 0.266 0.734 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.044 0.956 35 H 0.078 0.922 36 H 0.344 0.656 37 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.255 -9.072 -13.483 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.313 6.313 4 C 0.036 3.964 5 H 0.113 0.887 6 C -0.084 4.084 7 N -0.258 5.258 8 C 0.077 3.923 9 C -0.571 4.571 10 H 0.082 0.918 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.795 3.205 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.189 1.189 17 C -0.081 4.081 18 C -0.116 4.116 19 H 0.082 0.918 20 C -0.044 4.044 21 N -0.391 5.391 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.025 0.975 30 H -0.022 1.022 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.645 -8.859 -13.113 17.164 hybrid contribution 0.484 0.170 1.014 1.136 sum -6.161 -8.689 -12.100 16.120 Atomic orbital electron populations 1.21756 0.92652 1.03484 1.02534 1.22776 0.96556 0.82784 1.00897 1.87903 1.20282 1.28339 1.94819 1.23213 0.81030 0.98303 0.93880 0.88669 1.23158 0.89767 0.98528 0.96903 1.63584 1.30848 1.29037 1.02322 1.19573 0.94091 0.89175 0.89417 1.21530 1.46273 0.98044 0.91303 0.91750 1.25959 0.94683 0.95455 1.03576 1.70089 1.48090 1.09950 1.29182 0.85362 0.78873 0.78196 0.78104 1.19450 1.20605 1.18900 1.22900 0.96940 0.97360 0.90909 1.22361 0.96306 0.96969 0.95991 0.91771 1.21596 1.00785 0.91062 0.90978 1.58649 1.43490 1.28279 1.08664 0.93105 0.91824 0.88715 0.91451 0.93507 0.91327 0.95821 0.97484 1.02170 0.92555 0.89440 0.94239 0.93773 0.90383 0.84333 0.83208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 1.07 6.49 71.98 0.47 1.54 16 3 O -0.39 -12.48 10.16 -148.98 -1.51 -14.00 16 4 C 0.09 3.06 3.00 32.05 0.10 3.15 16 5 H 0.10 2.60 7.74 -2.39 -0.02 2.58 16 6 C 0.05 1.89 5.13 86.85 0.45 2.33 16 7 N -0.53 -24.16 5.31 -889.69 -4.72 -28.89 16 8 C 0.20 11.43 4.59 85.56 0.39 11.82 16 9 C -0.53 -31.26 8.35 25.60 0.21 -31.04 16 10 H 0.06 3.66 6.67 -2.91 -0.02 3.65 16 11 C 0.00 0.09 5.46 84.65 0.46 0.56 16 12 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 13 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 17 C 0.05 1.72 5.75 86.65 0.50 2.21 16 18 C -0.10 -3.07 2.91 -9.61 -0.03 -3.10 16 19 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 20 C 0.09 2.05 6.17 86.31 0.53 2.58 16 21 N -0.86 -18.77 9.62 -186.72 -1.80 -20.57 16 22 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 25 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 2.84 7.69 -2.39 -0.02 2.82 16 28 H 0.02 1.15 7.55 -2.39 -0.02 1.13 16 29 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 30 H -0.04 -2.41 7.96 -2.39 -0.02 -2.43 16 31 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.09 2.75 7.73 -2.39 -0.02 2.73 16 33 H 0.04 1.56 7.49 -2.39 -0.02 1.54 16 34 H 0.04 0.91 8.00 -2.39 -0.02 0.89 16 35 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.34 7.47 8.31 -89.69 -0.75 6.73 16 37 H 0.35 5.74 9.08 -89.70 -0.81 4.92 16 Total: -1.00 -68.13 298.99 -2.41 -70.55 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -0.51 Total: 15.10 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 3.82 Total: -12.06 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -6.24 Total: -106.78 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -1.51 Total: -14.00 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.13 -2.41 -70.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405825202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.506 kcal (2) G-P(sol) polarization free energy of solvation -68.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds