Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 S 1.81403 * 109.47009 * 89.99820 * 8 7 5 10 10 O 1.42093 * 109.47091 * 70.94797 * 9 8 7 11 11 C 1.76208 * 103.00058 * 180.02562 * 9 8 7 12 12 H 1.08004 * 119.99624 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00145 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99796 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00085 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47443 * 89.99881 * 15 13 11 17 17 H 1.48500 * 109.47271 * 210.00420 * 15 13 11 18 18 H 1.48508 * 109.46949 * 329.99827 * 15 13 11 19 19 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 20 20 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 21 21 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 22 22 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 23 23 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 24 24 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 25 25 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 26 26 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 27 27 H 0.97000 * 119.99610 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 16 1.8003 -3.1694 1.7110 10 8 0.6448 -2.5918 2.3030 11 6 1.3422 -4.8593 1.5129 12 1 1.2301 -5.2758 0.5228 13 6 1.1279 -5.6501 2.6218 14 7 1.2659 -5.1431 3.8275 15 14 0.6430 -7.4417 2.4118 16 1 1.8659 -8.2823 2.3564 17 1 -0.1972 -7.8651 3.5607 18 1 -0.1254 -7.6020 1.1511 19 1 -0.3633 -0.0003 -1.0277 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 5.7357 -0.6672 0.0009 23 1 4.9553 -1.9970 0.8900 24 1 4.9557 -1.9962 -0.8900 25 1 1.0051 -2.7040 -0.5133 26 1 2.7228 -3.1704 -0.5129 27 1 1.1148 -5.6994 4.6077 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868609.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -2.752642 kcal Electronic energy + Delta-G solvation = -13850.386377 eV Core-core repulsion = 11316.639916 eV Total energy + Delta-G solvation = -2533.746461 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.44903 -34.96180 -33.70568 -33.19663 -32.84286 -28.88934 -28.16956 -26.49427 -25.74427 -21.31998 -19.69480 -18.02958 -17.27678 -16.42096 -15.47104 -15.07171 -14.12313 -13.75531 -13.51468 -13.09443 -13.01727 -12.76908 -12.51235 -12.19933 -12.10295 -11.88375 -11.42975 -11.22195 -10.91456 -10.66673 -10.52180 -10.20342 -9.56172 -9.13093 -8.91403 -8.08325 -6.89337 -6.37603 -4.87385 1.87747 2.59560 3.07442 3.15352 3.19957 3.54436 3.67608 4.12422 4.63063 4.80829 4.90422 5.20435 5.27537 5.54149 5.66547 5.71759 5.78337 5.84942 6.02511 6.08414 6.16336 6.29524 6.46758 6.52715 6.76457 7.41729 8.12930 8.72002 9.03123 10.41622 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.007868 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.897581 B = 3557.708325 C = 3839.325576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.022 3.978 3 N -0.377 5.377 4 O 0.090 5.910 5 C -0.055 4.055 6 C -0.070 4.070 7 C -0.148 4.148 8 C -0.409 4.409 9 S 1.349 4.651 10 O -0.894 6.894 11 C -0.827 4.827 12 H 0.080 0.920 13 C 0.120 3.880 14 N -0.854 5.854 15 Si 0.906 3.094 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.269 1.269 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.766 3.485 -6.015 10.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 N -0.084 5.084 4 O 0.025 5.975 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.153 4.153 8 C -0.538 4.538 9 S 1.546 4.454 10 O -0.889 6.889 11 C -0.968 4.968 12 H 0.098 0.902 13 C -0.093 4.093 14 N -0.487 5.487 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.193 1.193 19 H 0.090 0.910 20 H 0.111 0.889 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.116 0.884 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.126 0.874 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.659 5.347 -5.034 10.611 hybrid contribution -2.444 -2.260 -1.305 3.576 sum 5.214 3.087 -6.340 8.770 Atomic orbital electron populations 1.20197 0.86467 1.04568 1.02413 1.23432 0.98882 0.88736 1.02652 1.73731 0.89453 1.24070 1.21136 1.84701 1.21475 1.22722 1.68576 1.24088 0.98161 0.83484 1.06255 1.20315 0.89493 0.98405 1.04562 1.20429 0.91416 0.96374 1.07032 1.26705 1.04910 0.93441 1.28704 1.69450 1.12049 0.84107 0.79792 1.92813 1.54406 1.76981 1.64709 1.27495 1.59065 1.12470 0.97770 0.90169 1.24759 0.90754 0.99915 0.93915 1.69893 1.42857 1.37583 0.98391 0.86386 0.79149 0.82770 0.78536 1.19324 1.20481 1.19348 0.91041 0.88899 0.90974 0.90424 0.88421 0.89513 0.90146 0.87385 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.39 36.01 0.37 -1.05 15 2 C 0.02 0.43 7.33 -82.10 -0.60 -0.17 15 3 N -0.38 -7.23 12.07 33.42 0.40 -6.83 15 4 O 0.09 1.56 11.20 17.19 0.19 1.75 15 5 C -0.06 -0.88 7.49 -35.31 -0.26 -1.14 15 6 C -0.07 -0.74 10.23 36.00 0.37 -0.37 15 7 C -0.15 -2.77 5.58 -104.42 -0.58 -3.35 15 8 C -0.41 -7.95 6.21 36.01 0.22 -7.73 15 9 S 1.35 31.89 12.96 -107.50 -1.39 30.50 15 10 O -0.89 -26.59 17.60 -35.23 -0.62 -27.21 15 11 C -0.83 -21.77 9.39 30.60 0.29 -21.48 15 12 H 0.08 2.03 7.81 -52.48 -0.41 1.62 15 13 C 0.12 3.22 5.46 -17.82 -0.10 3.12 15 14 N -0.85 -23.76 13.15 55.43 0.73 -23.03 15 15 Si 0.91 20.14 29.54 -169.99 -5.02 15.12 15 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 18 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.09 1.91 7.92 -51.93 -0.41 1.50 15 21 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.08 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.10 0.92 8.14 -51.93 -0.42 0.49 15 24 H 0.09 0.78 8.14 -51.93 -0.42 0.35 15 25 H 0.08 1.66 8.14 -51.93 -0.42 1.24 15 26 H 0.11 1.76 8.08 -51.93 -0.42 1.34 15 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 15 LS Contribution 260.87 15.07 3.93 3.93 Total: -1.00 -34.44 260.87 -4.98 -39.43 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -2.91 Total: -1.48 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: -0.29 Total: -32.18 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 1.13 Total: -29.86 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.43 Total: -25.46 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 31.89 SS G_CDS: -1.39 Total: 30.50 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -34.44 -4.98 -39.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868609.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.673 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds