Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.78109 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 S 1.81403 * 109.47009 * 89.99820 * 8 7 5 10 10 O 1.42093 * 109.47091 * 70.94797 * 9 8 7 11 11 C 1.76208 * 103.00058 * 180.02562 * 9 8 7 12 12 H 1.08004 * 119.99624 * 0.02562 * 11 9 8 13 13 C 1.37873 * 120.00145 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99796 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00085 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47443 * 89.99881 * 15 13 11 17 17 H 1.48500 * 109.47271 * 210.00420 * 15 13 11 18 18 H 1.48508 * 109.46949 * 329.99827 * 15 13 11 19 19 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 20 20 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 21 21 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 22 22 H 1.09002 * 109.47047 * 0.02562 * 6 5 4 23 23 H 1.08998 * 109.47490 * 120.01955 * 6 5 4 24 24 H 1.09003 * 109.47634 * 240.02910 * 6 5 4 25 25 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 26 26 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 27 27 H 0.97000 * 119.99610 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0003 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 16 1.8003 -3.1694 1.7110 10 8 0.6448 -2.5918 2.3030 11 6 1.3422 -4.8593 1.5129 12 1 1.2301 -5.2758 0.5228 13 6 1.1279 -5.6501 2.6218 14 7 1.2659 -5.1431 3.8275 15 14 0.6430 -7.4417 2.4118 16 1 1.8659 -8.2823 2.3564 17 1 -0.1972 -7.8651 3.5607 18 1 -0.1254 -7.6020 1.1511 19 1 -0.3633 -0.0003 -1.0277 20 1 -0.3633 -0.8898 0.5141 21 1 -0.3633 0.8902 0.5134 22 1 5.7357 -0.6672 0.0009 23 1 4.9553 -1.9970 0.8900 24 1 4.9557 -1.9962 -0.8900 25 1 1.0051 -2.7040 -0.5133 26 1 2.7228 -3.1704 -0.5129 27 1 1.1148 -5.6994 4.6077 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868609.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -27.819434 kcal Electronic energy + Delta-G solvation = -13851.473355 eV Core-core repulsion = 11316.639916 eV Total energy + Delta-G solvation = -2534.833439 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -45.87436 -36.39691 -35.78424 -34.86084 -34.49585 -30.25804 -29.57703 -28.04576 -27.50267 -22.82181 -21.04731 -19.96295 -18.70403 -17.85149 -17.44993 -16.94569 -15.51277 -15.38949 -15.17258 -14.71613 -14.34592 -14.17570 -13.75756 -13.65725 -13.41727 -13.41018 -12.98427 -12.93350 -12.86859 -12.44143 -12.16615 -11.80312 -11.24249 -10.94728 -10.52254 -9.80662 -8.81109 -8.35053 -6.93273 0.54066 1.04901 1.35239 1.37397 1.48886 1.91648 2.30577 2.31487 2.81506 3.17090 3.35548 3.60131 3.83868 4.08714 4.23477 4.41859 4.46895 4.62227 4.73518 4.87261 4.92922 4.99926 5.07633 5.21397 5.41271 5.45762 6.10370 7.00830 7.34392 8.44511 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.043953 B = 0.007868 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.897581 B = 3557.708325 C = 3839.325576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.002 4.002 3 N -0.394 5.394 4 O 0.095 5.905 5 C -0.020 4.020 6 C -0.080 4.080 7 C -0.190 4.190 8 C -0.383 4.383 9 S 1.369 4.631 10 O -0.966 6.966 11 C -0.852 4.852 12 H 0.084 0.916 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.969 3.031 16 H -0.241 1.241 17 H -0.279 1.279 18 H -0.272 1.272 19 H 0.094 0.906 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.107 0.893 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.063 0.937 26 H 0.146 0.854 27 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 2.625 -7.273 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.160 4.160 3 N -0.101 5.101 4 O 0.031 5.969 5 C -0.085 4.085 6 C -0.136 4.136 7 C -0.196 4.196 8 C -0.516 4.516 9 S 1.570 4.430 10 O -0.961 6.961 11 C -0.992 4.992 12 H 0.102 0.898 13 C -0.143 4.143 14 N -0.524 5.524 15 Si 0.791 3.209 16 H -0.164 1.164 17 H -0.205 1.205 18 H -0.197 1.197 19 H 0.113 0.887 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.125 0.875 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.082 0.918 26 H 0.164 0.836 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.548 4.475 -6.255 12.260 hybrid contribution -2.917 -1.891 -1.040 3.628 sum 6.631 2.584 -7.295 10.191 Atomic orbital electron populations 1.20158 0.86343 1.03344 1.03573 1.23750 0.99587 0.89520 1.03154 1.73719 0.90011 1.24202 1.22195 1.84685 1.20723 1.23589 1.67917 1.24980 0.99221 0.82733 1.01570 1.20764 0.87417 0.99026 1.06418 1.20433 0.92764 0.95634 1.10731 1.26268 1.05543 0.94783 1.24989 1.68287 1.10486 0.82494 0.81689 1.92727 1.56422 1.78100 1.68828 1.27848 1.59303 1.13950 0.98091 0.89801 1.25714 0.90545 1.04477 0.93578 1.69982 1.43794 1.39347 0.99258 0.85423 0.79706 0.77744 0.78019 1.16440 1.20465 1.19676 0.88714 0.92038 0.90148 0.87472 0.86873 0.86969 0.91824 0.83599 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 10.39 71.24 0.74 -2.09 15 2 C 0.00 -0.07 7.33 43.58 0.32 0.25 15 3 N -0.39 -14.77 12.07 -49.56 -0.60 -15.37 15 4 O 0.10 3.09 11.20 71.69 0.80 3.89 15 5 C -0.02 -0.57 7.49 25.04 0.19 -0.38 15 6 C -0.08 -1.31 10.23 71.23 0.73 -0.58 15 7 C -0.19 -6.88 5.58 -19.74 -0.11 -6.99 15 8 C -0.38 -14.43 6.21 71.24 0.44 -13.99 15 9 S 1.37 65.18 12.96 -56.49 -0.73 64.45 15 10 O -0.97 -59.49 17.60 -148.98 -2.62 -62.12 15 11 C -0.85 -44.75 9.39 67.73 0.64 -44.12 15 12 H 0.08 4.19 7.81 -2.91 -0.02 4.16 15 13 C 0.07 3.57 5.46 84.65 0.46 4.03 15 14 N -0.89 -50.01 13.15 21.45 0.28 -49.73 15 15 Si 0.97 40.63 29.54 68.60 2.03 42.66 15 16 H -0.24 -8.99 7.11 99.48 0.71 -8.28 15 17 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 18 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 19 H 0.09 2.94 8.14 -2.39 -0.02 2.92 15 20 H 0.06 2.65 7.92 -2.39 -0.02 2.63 15 21 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 22 H 0.11 1.21 8.14 -2.39 -0.02 1.19 15 23 H 0.11 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.11 1.41 8.14 -2.39 -0.02 1.39 15 25 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 26 H 0.15 4.29 8.08 -2.39 -0.02 4.27 15 27 H 0.29 14.78 8.31 -92.71 -0.77 14.01 15 Total: -1.00 -76.22 260.87 3.74 -72.48 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.17 Total: 7.61 kcal Atomic # 6 Polarization: -67.29 SS G_CDS: 3.41 Total: -63.88 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -0.32 Total: -65.10 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.82 Total: -58.22 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 65.18 SS G_CDS: -0.73 Total: 64.45 kcal Total: -76.22 3.74 -72.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868609.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.662 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds