Wall clock time and date at job start Mon Mar 30 2020 03:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48492 * 109.47487 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47233 * 300.00179 * 3 2 1 6 6 H 1.48508 * 109.46883 * 59.99983 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.39740 * 120.00150 * 180.02562 * 10 9 7 12 12 C 1.38907 * 120.06575 * 359.72010 * 11 10 9 13 13 C 1.38116 * 119.98886 * 179.76947 * 12 11 10 14 14 C 1.38270 * 120.11179 * 0.51156 * 13 12 11 15 15 C 1.38484 * 120.13027 * 359.74409 * 14 13 12 16 16 F 1.35108 * 119.99147 * 179.97438 * 15 14 13 17 17 C 1.38417 * 120.01668 * 0.02562 * 15 14 13 18 18 Cl 1.73603 * 120.06045 * 179.97438 * 17 15 14 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 0.97010 * 119.99910 * 359.97438 * 10 9 7 23 23 H 1.08007 * 120.00526 * 0.02763 * 12 11 10 24 24 H 1.08000 * 119.94643 * 180.23138 * 13 12 11 25 25 H 1.07998 * 119.93218 * 179.76641 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7372 -4.9302 -0.0044 12 6 0.3718 -5.1856 0.0007 13 6 -0.0868 -6.4883 -0.0058 14 6 0.8110 -7.5399 -0.0068 15 6 2.1733 -7.2908 -0.0065 16 9 3.0481 -8.3204 -0.0069 17 6 2.6388 -5.9872 -0.0048 18 17 4.3463 -5.6737 -0.0038 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6247 -2.5562 -0.8920 22 1 3.1568 -3.4354 -0.0029 23 1 -0.3311 -4.3655 0.0055 24 1 -1.1486 -6.6861 -0.0056 25 1 0.4492 -8.5574 -0.0081 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575478193.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:12 Heat of formation + Delta-G solvation = -52.142228 kcal Electronic energy + Delta-G solvation = -13135.921035 eV Core-core repulsion = 10474.528869 eV Total energy + Delta-G solvation = -2661.392166 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.93543 -40.31602 -37.45012 -36.72574 -34.62442 -31.48525 -30.70492 -28.24900 -25.06594 -23.68648 -22.44983 -19.43400 -18.43823 -17.72698 -17.28394 -16.74245 -16.60112 -16.18034 -15.37024 -15.14805 -14.97042 -14.27162 -13.90221 -13.80738 -13.06429 -12.84354 -12.81539 -12.51821 -12.47378 -12.19397 -11.86154 -11.43930 -11.18807 -10.59976 -9.67327 -8.39145 -8.32783 -6.45593 0.09368 0.46139 1.12259 1.40186 1.41492 1.53765 2.31018 2.60506 2.64548 3.03223 3.30586 3.95580 3.97921 4.37390 4.42969 4.83856 4.95662 5.09746 5.18072 5.26990 5.46594 5.49457 5.79930 5.89238 6.30124 6.63577 6.92397 7.26345 8.78726 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.041418 B = 0.006743 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.868666 B = 4151.686406 C = 4812.409323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.268 3.732 10 N -0.723 5.723 11 C 0.242 3.758 12 C -0.216 4.216 13 C -0.022 4.022 14 C -0.208 4.208 15 C 0.144 3.856 16 F -0.135 7.135 17 C -0.184 4.184 18 Cl -0.067 7.067 19 H 0.270 0.730 20 H 0.005 0.995 21 H 0.005 0.995 22 H 0.397 0.603 23 H 0.127 0.873 24 H 0.172 0.828 25 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.387 -12.146 -0.012 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.083 0.917 9 C 0.146 3.854 10 N -0.347 5.347 11 C 0.132 3.868 12 C -0.239 4.239 13 C -0.041 4.041 14 C -0.229 4.229 15 C 0.124 3.876 16 F -0.113 7.113 17 C -0.217 4.217 18 Cl -0.039 7.039 19 H 0.079 0.921 20 H 0.023 0.977 21 H 0.023 0.977 22 H 0.233 0.767 23 H 0.145 0.855 24 H 0.190 0.810 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.285 -11.823 -0.011 11.893 hybrid contribution 1.075 1.026 0.001 1.486 sum 2.360 -10.797 -0.009 11.052 Atomic orbital electron populations 1.70041 1.07522 1.28496 1.49830 1.25786 0.95792 1.02977 0.93873 0.85288 0.78794 0.78288 0.77971 1.18965 1.20125 1.20142 1.21555 0.93809 0.91399 1.53074 0.91699 1.18752 0.88509 0.83182 0.94970 1.45454 1.09816 1.02201 1.77228 1.17782 0.92833 0.84414 0.91813 1.20950 0.92318 0.99237 1.11422 1.21170 1.01448 0.89611 0.91855 1.21101 0.88947 1.02259 1.10576 1.17305 0.88140 0.81354 1.00840 1.91484 1.69209 1.56921 1.93686 1.20379 0.84987 0.93081 1.23279 1.98309 1.12020 1.95852 1.97685 0.92074 0.97726 0.97730 0.76732 0.85539 0.81040 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.92 13.29 21.45 0.28 -51.64 15 2 C 0.02 0.88 5.46 84.66 0.46 1.34 15 3 Si 0.97 42.01 29.54 68.60 2.03 44.04 15 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 15 5 H -0.28 -11.61 7.11 99.48 0.71 -10.91 15 6 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.56 -30.15 9.28 25.60 0.24 -29.91 15 8 H 0.06 3.39 7.60 -2.91 -0.02 3.37 15 9 C 0.27 13.49 4.67 85.63 0.40 13.89 15 10 N -0.72 -31.08 5.68 -343.04 -1.95 -33.03 15 11 C 0.24 9.12 6.65 38.21 0.25 9.38 15 12 C -0.22 -7.23 9.31 22.40 0.21 -7.02 15 13 C -0.02 -0.55 10.04 22.25 0.22 -0.32 15 14 C -0.21 -5.02 10.02 22.34 0.22 -4.80 15 15 C 0.14 4.32 7.27 22.37 0.16 4.48 15 16 F -0.13 -3.96 16.84 44.97 0.76 -3.20 15 17 C -0.18 -6.35 6.34 22.48 0.14 -6.20 15 18 Cl -0.07 -2.22 27.25 -2.72 -0.07 -2.30 15 19 H 0.27 14.24 8.31 -92.71 -0.77 13.47 15 20 H 0.00 0.26 7.94 -2.39 -0.02 0.24 15 21 H 0.00 0.26 7.96 -2.39 -0.02 0.24 15 22 H 0.40 16.68 7.00 -92.70 -0.65 16.03 15 23 H 0.13 4.55 6.73 -2.91 -0.02 4.54 15 24 H 0.17 2.87 8.06 -2.91 -0.02 2.85 15 25 H 0.17 2.88 8.06 -2.91 -0.02 2.85 15 Total: -1.00 -57.88 244.60 3.93 -53.95 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.58 Total: 11.35 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 2.31 Total: -19.17 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -1.66 Total: -84.67 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.76 Total: -3.20 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.30 kcal Total: -57.88 3.93 -53.95 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575478193.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.805 kcal (2) G-P(sol) polarization free energy of solvation -57.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds