Wall clock time and date at job start Mon Mar 30 2020 03:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40028 * 125.96979 * 2 1 4 4 C 1.30782 * 108.48484 * 179.97438 * 3 2 1 5 5 C 1.40396 * 108.22629 * 0.02562 * 4 3 2 6 6 N 1.40095 * 126.16840 * 180.02562 * 5 4 3 7 7 C 1.34777 * 119.99878 * 0.02840 * 6 5 4 8 8 O 1.21799 * 120.00047 * 359.97438 * 7 6 5 9 9 C 1.41705 * 119.99804 * 180.02562 * 7 6 5 10 10 H 1.08000 * 119.99628 * 359.97438 * 9 7 6 11 11 C 1.40132 * 120.00085 * 179.97438 * 9 7 6 12 12 N 1.30633 * 119.99805 * 0.02562 * 11 9 7 13 13 Si 1.86800 * 120.00359 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46522 * 60.00558 * 13 11 9 15 15 H 1.48501 * 109.47356 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47265 * 300.00739 * 13 11 9 17 17 C 1.35179 * 125.96306 * 180.28038 * 2 1 3 18 18 Cl 1.73597 * 126.22376 * 0.06032 * 17 2 1 19 19 H 1.08991 * 109.47430 * 90.01584 * 1 2 3 20 20 H 1.08997 * 109.47454 * 210.02296 * 1 2 3 21 21 H 1.09007 * 109.46451 * 330.01720 * 1 2 3 22 22 H 1.07996 * 125.88610 * 180.02562 * 4 3 2 23 23 H 0.97000 * 119.99447 * 180.02562 * 6 5 4 24 24 H 0.96998 * 120.00005 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2875 1.1333 0.0000 4 6 3.5349 0.7403 0.0006 5 6 3.5531 -0.6635 0.0003 6 7 4.6946 -1.4756 0.0013 7 6 5.9203 -0.9151 0.0031 8 8 6.0355 0.2974 0.0035 9 6 7.0750 -1.7365 0.0035 10 1 6.9728 -2.8117 0.0028 11 6 8.3494 -1.1538 0.0049 12 7 8.4730 0.1467 0.0063 13 14 9.8716 -2.2366 0.0061 14 1 9.8703 -3.0935 -1.2067 15 1 11.0865 -1.3827 0.0081 16 1 9.8680 -3.0943 1.2183 17 6 2.2589 -1.0941 -0.0054 18 17 1.7278 -2.7468 -0.0149 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3632 0.8902 0.5136 22 1 4.4016 1.3847 0.0011 23 1 4.6028 -2.4412 0.0006 24 1 9.3551 0.5500 0.0076 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606272050.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:33 Heat of formation + Delta-G solvation = 14.031384 kcal Electronic energy + Delta-G solvation = -13474.171373 eV Core-core repulsion = 10835.568672 eV Total energy + Delta-G solvation = -2638.602701 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.23985 -39.46704 -37.83332 -35.51261 -34.45604 -33.64646 -30.41706 -28.74018 -26.96075 -23.28966 -22.25849 -21.30279 -19.16099 -18.35054 -17.48969 -16.74190 -16.71365 -16.03282 -15.01023 -14.90718 -14.55182 -14.38248 -13.72587 -13.52145 -13.17265 -12.95357 -12.73919 -12.65335 -12.58367 -12.02779 -11.75609 -11.37747 -10.86096 -10.23956 -9.82754 -8.46602 -8.34123 -6.94611 0.46888 0.58050 1.43825 1.43957 1.58770 1.68465 1.78275 2.25586 2.51242 2.97020 3.71650 3.72720 4.12775 4.41493 4.44455 4.58046 4.65653 5.25652 5.38583 5.81594 5.92136 6.13707 6.30438 6.53816 6.78863 7.43728 8.42683 8.61151 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.048302 B = 0.007189 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.547679 B = 3894.041165 C = 4458.438823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.363 5.363 3 N -0.283 5.283 4 C 0.029 3.971 5 C 0.045 3.955 6 N -0.667 5.667 7 C 0.535 3.465 8 O -0.611 6.611 9 C -0.563 4.563 10 H 0.090 0.910 11 C 0.034 3.966 12 N -0.799 5.799 13 Si 1.000 3.000 14 H -0.254 1.254 15 H -0.273 1.273 16 H -0.254 1.254 17 C 0.049 3.951 18 Cl 0.016 6.984 19 H 0.092 0.908 20 H 0.106 0.894 21 H 0.105 0.895 22 H 0.188 0.812 23 H 0.404 0.596 24 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 -6.688 0.040 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.153 5.153 3 N -0.109 5.109 4 C -0.156 4.156 5 C -0.064 4.064 6 N -0.312 5.312 7 C 0.344 3.656 8 O -0.499 6.499 9 C -0.599 4.599 10 H 0.108 0.892 11 C -0.185 4.185 12 N -0.427 5.427 13 Si 0.819 3.181 14 H -0.178 1.178 15 H -0.198 1.198 16 H -0.178 1.178 17 C -0.107 4.107 18 Cl 0.044 6.956 19 H 0.111 0.889 20 H 0.125 0.875 21 H 0.124 0.876 22 H 0.204 0.796 23 H 0.239 0.761 24 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.624 -4.865 0.043 13.529 hybrid contribution 1.098 -1.427 -0.014 1.800 sum -11.527 -6.292 0.029 13.132 Atomic orbital electron populations 1.22265 0.70894 1.06218 1.05129 1.48368 1.07706 1.01012 1.58192 1.77303 1.01340 1.07404 1.24819 1.24250 0.95070 0.94235 1.02054 1.17739 0.86512 0.91781 1.10339 1.43125 1.03026 1.08462 1.76579 1.17335 0.82259 0.88279 0.77729 1.90480 1.85752 1.16266 1.57364 1.20467 0.90666 0.95249 1.53473 0.89167 1.26976 1.04037 0.96452 0.91026 1.70144 1.26015 1.13079 1.33449 0.85022 0.74702 0.77978 0.80357 1.17792 1.19773 1.17800 1.20658 0.89434 0.84189 1.16373 1.98345 1.90087 1.09791 1.97370 0.88917 0.87532 0.87642 0.79576 0.76107 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.83 11.30 127.77 1.44 3.27 14 2 N -0.36 -11.87 4.02 -358.35 -1.44 -13.31 14 3 N -0.28 -11.47 12.55 -56.71 -0.71 -12.18 14 4 C 0.03 1.38 10.84 85.37 0.93 2.30 14 5 C 0.04 1.99 6.90 37.91 0.26 2.25 14 6 N -0.67 -31.37 5.44 -311.92 -1.70 -33.07 14 7 C 0.53 30.50 7.54 85.10 0.64 31.14 14 8 O -0.61 -39.11 12.02 -4.66 -0.06 -39.16 14 9 C -0.56 -30.82 9.31 23.59 0.22 -30.60 14 10 H 0.09 4.38 7.85 -2.91 -0.02 4.35 14 11 C 0.03 1.80 5.50 85.33 0.47 2.26 14 12 N -0.80 -46.78 11.73 21.85 0.26 -46.52 14 13 Si 1.00 39.06 29.56 68.60 2.03 41.09 14 14 H -0.25 -9.35 7.11 99.48 0.71 -8.65 14 15 H -0.27 -10.29 7.11 99.48 0.71 -9.58 14 16 H -0.25 -9.36 7.11 99.48 0.71 -8.65 14 17 C 0.05 1.74 7.50 83.75 0.63 2.37 14 18 Cl 0.02 0.43 28.54 -2.72 -0.08 0.35 14 19 H 0.09 1.47 8.14 -2.39 -0.02 1.45 14 20 H 0.11 1.58 7.82 -2.39 -0.02 1.56 14 21 H 0.11 1.76 8.14 -2.38 -0.02 1.74 14 22 H 0.19 9.93 5.91 -2.91 -0.02 9.91 14 23 H 0.40 16.42 8.54 -92.71 -0.79 15.63 14 24 H 0.28 14.76 8.29 -92.71 -0.77 13.99 14 Total: -1.00 -71.40 238.75 3.36 -68.04 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.46 Total: 21.77 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 4.59 Total: 13.00 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.59 Total: -105.09 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.06 Total: -39.16 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -0.08 Total: 0.35 kcal Total: -71.40 3.36 -68.04 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606272050.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.076 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds