Wall clock time and date at job start Mon Mar 30 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00287 * 2 1 4 4 C 1.46896 * 110.99913 * 123.95643 * 2 1 3 5 5 C 1.53000 * 109.47506 * 169.99738 * 4 2 1 6 6 H 1.09005 * 109.47224 * 59.99403 * 5 4 2 7 7 O 1.42899 * 109.47085 * 300.00125 * 5 4 2 8 8 C 1.52996 * 109.47670 * 179.97438 * 5 4 2 9 9 N 1.46502 * 109.47406 * 184.99961 * 8 5 4 10 10 C 1.36940 * 119.99699 * 90.00066 * 9 8 5 11 11 H 1.08005 * 119.99458 * 217.95795 * 10 9 8 12 12 C 1.38810 * 120.00237 * 37.95691 * 10 9 8 13 13 N 1.31617 * 119.99854 * 20.74803 * 12 10 9 14 14 Si 1.86796 * 119.99971 * 200.74550 * 12 10 9 15 15 H 1.48496 * 109.47263 * 90.00211 * 14 12 10 16 16 H 1.48505 * 109.47045 * 210.00299 * 14 12 10 17 17 H 1.48503 * 109.47127 * 329.99896 * 14 12 10 18 18 C 1.46498 * 119.99914 * 270.00189 * 9 8 5 19 19 C 1.53004 * 117.49559 * 192.40446 * 18 9 8 20 20 C 1.52997 * 117.49807 * 123.74731 * 18 9 8 21 21 H 1.09000 * 109.46943 * 296.04964 * 1 2 3 22 22 H 1.08997 * 109.46768 * 56.04333 * 1 2 3 23 23 H 1.08992 * 109.47095 * 176.04349 * 1 2 3 24 24 H 1.09007 * 109.47049 * 183.95614 * 3 2 1 25 25 H 1.09004 * 109.46752 * 303.95299 * 3 2 1 26 26 H 1.08997 * 109.47168 * 63.95570 * 3 2 1 27 27 H 1.09004 * 109.47217 * 49.99762 * 4 2 1 28 28 H 1.08999 * 109.47354 * 289.99791 * 4 2 1 29 29 H 0.96701 * 114.00236 * 299.99786 * 7 5 4 30 30 H 1.09001 * 109.46955 * 64.99834 * 8 5 4 31 31 H 1.08998 * 109.46989 * 305.00192 * 8 5 4 32 32 H 0.96997 * 119.99782 * 174.96897 * 13 12 10 33 33 H 1.08997 * 115.55031 * 338.07309 * 18 9 8 34 34 H 1.08998 * 117.50003 * 359.97438 * 19 18 9 35 35 H 1.09001 * 117.49573 * 145.01867 * 19 18 9 36 36 H 1.09004 * 117.49323 * 214.97853 * 20 18 9 37 37 H 1.08995 * 117.50012 * 359.97085 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9555 0.9703 6 1 3.9910 0.0192 0.9322 7 8 3.7639 -1.6650 -0.2426 8 6 4.0528 -1.7528 2.1554 9 7 5.5124 -1.8319 2.0573 10 6 6.2911 -0.8679 2.6401 11 1 7.1884 -0.5265 2.1454 12 6 5.9271 -0.3296 3.8668 13 7 5.1064 -0.9885 4.6571 14 14 6.6022 1.3298 4.3957 15 1 5.6895 2.4059 3.9328 16 1 6.7069 1.3725 5.8765 17 1 7.9470 1.5304 3.7985 18 6 6.1389 -2.9422 1.3356 19 6 7.6468 -3.1359 1.5085 20 6 7.0907 -2.5926 0.1899 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0251 -0.0709 24 1 3.0829 1.3431 -0.0709 25 1 1.5899 1.9162 -0.8525 26 1 1.7045 1.8723 0.9233 27 1 1.5089 -1.7407 1.1756 28 1 1.7976 -0.2249 2.0628 29 1 3.3604 -2.5431 -0.2787 30 1 3.6327 -2.7585 2.1423 31 1 3.7776 -1.2562 3.0859 32 1 4.9094 -0.6482 5.5438 33 1 5.5259 -3.8368 1.2255 34 1 8.1726 -2.4369 2.1588 35 1 8.0258 -4.1579 1.5117 36 1 7.1041 -3.2574 -0.6739 37 1 7.2504 -1.5365 -0.0272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685974518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:51 Heat of formation + Delta-G solvation = 4.874161 kcal Electronic energy + Delta-G solvation = -16934.613492 eV Core-core repulsion = 14327.829734 eV Total energy + Delta-G solvation = -2606.783758 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.10637 -36.75059 -35.20970 -33.27322 -30.77072 -29.02470 -27.37489 -25.77553 -23.96319 -21.72572 -21.22005 -20.36295 -19.79873 -16.67019 -15.69814 -15.38816 -15.12423 -14.83955 -14.34933 -14.24145 -13.93392 -13.56826 -12.92868 -12.42129 -12.18280 -11.78572 -11.58203 -11.45090 -11.31250 -11.04125 -10.84025 -10.69810 -10.49769 -10.38675 -10.02643 -9.97836 -9.49855 -9.23663 -9.02475 -8.45802 -8.02980 -6.42094 -5.83026 -3.39687 3.31304 3.39365 3.41592 4.19326 4.42189 5.05790 5.13627 5.31335 5.35351 5.37637 5.45408 5.57480 5.68378 5.80870 5.91648 5.95189 6.02665 6.11358 6.17781 6.21042 6.36700 6.37558 6.51842 6.61929 6.72631 7.04094 7.13012 7.27366 7.29458 7.32738 7.47701 7.81110 8.49010 8.56401 9.15366 9.78049 10.36187 11.15973 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.010307 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.945622 B = 2715.910818 C = 3604.745746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.024 3.976 4 C 0.023 3.977 5 C 0.092 3.908 6 H 0.092 0.908 7 O -0.545 6.545 8 C 0.123 3.877 9 N -0.543 5.543 10 C -0.255 4.255 11 H 0.062 0.938 12 C 0.013 3.987 13 N -0.891 5.891 14 Si 0.898 3.102 15 H -0.286 1.286 16 H -0.290 1.290 17 H -0.276 1.276 18 C 0.139 3.861 19 C -0.204 4.204 20 C -0.215 4.215 21 H 0.019 0.981 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.355 0.645 30 H 0.028 0.972 31 H 0.101 0.899 32 H 0.256 0.744 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -0.147 -6.237 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.260 5.260 3 C -0.124 4.124 4 C -0.105 4.105 5 C 0.030 3.970 6 H 0.110 0.890 7 O -0.347 6.347 8 C -0.004 4.004 9 N -0.259 5.259 10 C -0.385 4.385 11 H 0.080 0.920 12 C -0.187 4.187 13 N -0.533 5.533 14 Si 0.728 3.272 15 H -0.212 1.212 16 H -0.217 1.217 17 H -0.201 1.201 18 C 0.029 3.971 19 C -0.243 4.243 20 C -0.256 4.256 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.199 0.801 30 H 0.046 0.954 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.197 0.262 -6.610 9.065 hybrid contribution -0.259 0.836 1.309 1.575 sum -6.456 1.098 -5.301 8.426 Atomic orbital electron populations 1.22376 0.88453 1.01720 0.99857 1.61973 1.06590 1.13788 1.43634 1.22403 1.01813 0.88663 0.99565 1.22940 0.98558 0.97863 0.91185 1.22783 0.90255 0.97374 0.86602 0.88980 1.86594 1.77287 1.31770 1.39097 1.21562 0.83908 0.96879 0.98082 1.43168 1.00413 1.23230 1.59065 1.18982 1.07414 1.12525 0.99608 0.92047 1.25216 0.99138 0.99063 0.95315 1.69892 1.38298 1.37761 1.07383 0.86360 0.79079 0.84365 0.77443 1.21245 1.21672 1.20142 1.20969 0.88654 0.91473 0.95986 1.23131 1.00122 1.00237 1.00776 1.23250 1.10009 1.00556 0.91789 0.96206 0.91888 0.91738 0.90614 0.92043 0.96071 0.91217 0.94276 0.80112 0.95404 0.88170 0.93358 0.89958 0.88548 0.91029 0.91141 0.89898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.57 60.07 0.57 0.88 16 2 N -0.54 -8.35 4.89 -251.26 -1.23 -9.58 16 3 C 0.02 0.36 9.32 60.06 0.56 0.92 16 4 C 0.02 0.39 4.62 -3.83 -0.02 0.37 16 5 C 0.09 1.80 3.08 -26.73 -0.08 1.71 16 6 H 0.09 2.06 6.55 -51.93 -0.34 1.72 16 7 O -0.55 -10.42 12.76 -35.23 -0.45 -10.87 16 8 C 0.12 2.75 4.99 -4.04 -0.02 2.73 16 9 N -0.54 -13.31 2.74 -165.66 -0.45 -13.76 16 10 C -0.26 -6.86 8.08 -15.06 -0.12 -6.98 16 11 H 0.06 1.69 7.30 -52.48 -0.38 1.31 16 12 C 0.01 0.34 4.97 -17.43 -0.09 0.26 16 13 N -0.89 -24.90 11.45 55.49 0.64 -24.26 16 14 Si 0.90 21.32 29.60 -169.99 -5.03 16.29 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 C 0.14 3.03 6.21 -67.93 -0.42 2.61 16 19 C -0.20 -4.24 9.80 -26.69 -0.26 -4.50 16 20 C -0.22 -4.37 10.14 -26.70 -0.27 -4.64 16 21 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 22 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 23 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 24 H 0.08 1.27 6.47 -51.93 -0.34 0.93 16 25 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 28 H 0.04 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.35 5.65 9.05 45.56 0.41 6.06 16 30 H 0.03 0.58 8.04 -51.93 -0.42 0.16 16 31 H 0.10 2.53 5.52 -51.93 -0.29 2.25 16 32 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 33 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.10 2.21 6.89 -51.93 -0.36 1.85 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.83 8.13 -51.93 -0.42 1.41 16 LS Contribution 301.03 15.07 4.54 4.54 Total: -1.00 -28.79 301.03 -7.62 -36.41 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.48 Total: 7.88 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.15 Total: -6.64 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.05 Total: -47.60 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.45 Total: -10.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.79 -7.62 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685974518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.283 kcal (2) G-P(sol) polarization free energy of solvation -28.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds