Wall clock time and date at job start Mon Mar 30 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46897 * 111.00287 * 2 1 4 4 C 1.46896 * 110.99913 * 123.95643 * 2 1 3 5 5 C 1.53000 * 109.47506 * 169.99738 * 4 2 1 6 6 H 1.09005 * 109.47224 * 59.99403 * 5 4 2 7 7 O 1.42899 * 109.47085 * 300.00125 * 5 4 2 8 8 C 1.52996 * 109.47670 * 179.97438 * 5 4 2 9 9 N 1.46502 * 109.47406 * 184.99961 * 8 5 4 10 10 C 1.36940 * 119.99699 * 90.00066 * 9 8 5 11 11 H 1.08005 * 119.99458 * 217.95795 * 10 9 8 12 12 C 1.38810 * 120.00237 * 37.95691 * 10 9 8 13 13 N 1.31617 * 119.99854 * 20.74803 * 12 10 9 14 14 Si 1.86796 * 119.99971 * 200.74550 * 12 10 9 15 15 H 1.48496 * 109.47263 * 90.00211 * 14 12 10 16 16 H 1.48505 * 109.47045 * 210.00299 * 14 12 10 17 17 H 1.48503 * 109.47127 * 329.99896 * 14 12 10 18 18 C 1.46498 * 119.99914 * 270.00189 * 9 8 5 19 19 C 1.53004 * 117.49559 * 192.40446 * 18 9 8 20 20 C 1.52997 * 117.49807 * 123.74731 * 18 9 8 21 21 H 1.09000 * 109.46943 * 296.04964 * 1 2 3 22 22 H 1.08997 * 109.46768 * 56.04333 * 1 2 3 23 23 H 1.08992 * 109.47095 * 176.04349 * 1 2 3 24 24 H 1.09007 * 109.47049 * 183.95614 * 3 2 1 25 25 H 1.09004 * 109.46752 * 303.95299 * 3 2 1 26 26 H 1.08997 * 109.47168 * 63.95570 * 3 2 1 27 27 H 1.09004 * 109.47217 * 49.99762 * 4 2 1 28 28 H 1.08999 * 109.47354 * 289.99791 * 4 2 1 29 29 H 0.96701 * 114.00236 * 299.99786 * 7 5 4 30 30 H 1.09001 * 109.46955 * 64.99834 * 8 5 4 31 31 H 1.08998 * 109.46989 * 305.00192 * 8 5 4 32 32 H 0.96997 * 119.99782 * 174.96897 * 13 12 10 33 33 H 1.08997 * 115.55031 * 338.07309 * 18 9 8 34 34 H 1.08998 * 117.50003 * 359.97438 * 19 18 9 35 35 H 1.09001 * 117.49573 * 145.01867 * 19 18 9 36 36 H 1.09004 * 117.49323 * 214.97853 * 20 18 9 37 37 H 1.08995 * 117.50012 * 359.97085 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9555 0.9703 6 1 3.9910 0.0192 0.9322 7 8 3.7639 -1.6650 -0.2426 8 6 4.0528 -1.7528 2.1554 9 7 5.5124 -1.8319 2.0573 10 6 6.2911 -0.8679 2.6401 11 1 7.1884 -0.5265 2.1454 12 6 5.9271 -0.3296 3.8668 13 7 5.1064 -0.9885 4.6571 14 14 6.6022 1.3298 4.3957 15 1 5.6895 2.4059 3.9328 16 1 6.7069 1.3725 5.8765 17 1 7.9470 1.5304 3.7985 18 6 6.1389 -2.9422 1.3356 19 6 7.6468 -3.1359 1.5085 20 6 7.0907 -2.5926 0.1899 21 1 -0.3633 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3633 -1.0251 -0.0709 24 1 3.0829 1.3431 -0.0709 25 1 1.5899 1.9162 -0.8525 26 1 1.7045 1.8723 0.9233 27 1 1.5089 -1.7407 1.1756 28 1 1.7976 -0.2249 2.0628 29 1 3.3604 -2.5431 -0.2787 30 1 3.6327 -2.7585 2.1423 31 1 3.7776 -1.2562 3.0859 32 1 4.9094 -0.6482 5.5438 33 1 5.5259 -3.8368 1.2255 34 1 8.1726 -2.4369 2.1588 35 1 8.0258 -4.1579 1.5117 36 1 7.1041 -3.2574 -0.6739 37 1 7.2504 -1.5365 -0.0272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685974518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:51 Heat of formation + Delta-G solvation = -15.721279 kcal Electronic energy + Delta-G solvation = -16935.506577 eV Core-core repulsion = 14327.829734 eV Total energy + Delta-G solvation = -2607.676843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61491 -38.34136 -36.65039 -35.14500 -32.64012 -30.59748 -28.49928 -27.49882 -25.68038 -23.17701 -22.87847 -21.82531 -21.62520 -18.49572 -17.43257 -16.95074 -16.65133 -16.21022 -16.07731 -15.69746 -15.51506 -15.11574 -14.54275 -14.01235 -13.56310 -13.24650 -13.10032 -12.86733 -12.73333 -12.63123 -12.53089 -12.48168 -12.19792 -12.13485 -11.85070 -11.65463 -11.25821 -10.91873 -10.62386 -10.44376 -9.25101 -8.38267 -7.82980 -5.45363 1.40087 1.43383 1.51181 2.44471 2.96539 3.14863 3.48511 3.57173 3.88802 4.06175 4.24078 4.31449 4.37093 4.45827 4.53474 4.60319 4.61886 4.70964 4.73543 4.80410 4.86562 4.99800 5.00007 5.00485 5.10634 5.37930 5.46060 5.58911 5.59956 5.71173 6.03627 6.16035 6.46095 7.12514 7.20279 7.86462 8.37160 9.09569 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.010307 C = 0.007766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.945622 B = 2715.910818 C = 3604.745746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.034 3.966 5 C 0.111 3.889 6 H 0.058 0.942 7 O -0.553 6.553 8 C 0.126 3.874 9 N -0.560 5.560 10 C -0.260 4.260 11 H 0.046 0.954 12 C -0.029 4.029 13 N -0.915 5.915 14 Si 0.951 3.049 15 H -0.284 1.284 16 H -0.289 1.289 17 H -0.274 1.274 18 C 0.118 3.882 19 C -0.202 4.202 20 C -0.197 4.197 21 H 0.022 0.978 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.084 0.916 26 H 0.020 0.980 27 H 0.089 0.911 28 H 0.026 0.974 29 H 0.371 0.629 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -0.716 -7.412 10.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.095 4.095 5 C 0.049 3.951 6 H 0.076 0.924 7 O -0.357 6.357 8 C -0.001 4.001 9 N -0.277 5.277 10 C -0.390 4.390 11 H 0.064 0.936 12 C -0.227 4.227 13 N -0.559 5.559 14 Si 0.779 3.221 15 H -0.211 1.211 16 H -0.216 1.216 17 H -0.199 1.199 18 C 0.010 3.990 19 C -0.241 4.241 20 C -0.237 4.237 21 H 0.040 0.960 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.107 0.893 28 H 0.045 0.955 29 H 0.218 0.782 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.044 -0.320 -7.809 10.522 hybrid contribution 0.007 0.961 1.597 1.864 sum -7.037 0.641 -6.212 9.408 Atomic orbital electron populations 1.22457 0.86183 1.02961 1.00735 1.61955 1.08628 1.13737 1.42708 1.22383 1.00450 0.88959 1.00532 1.22728 0.96500 0.99005 0.91223 1.22289 0.91893 0.95279 0.85612 0.92380 1.86550 1.77823 1.32969 1.38385 1.21505 0.83190 0.97578 0.97844 1.43349 1.01129 1.23779 1.59442 1.19011 1.07186 1.13285 0.99548 0.93625 1.25763 0.99896 1.01575 0.95458 1.70000 1.39487 1.38915 1.07487 0.85533 0.78533 0.81133 0.76903 1.21057 1.21554 1.19905 1.21252 0.89426 0.91638 0.96733 1.23125 0.99162 1.01232 1.00561 1.23159 1.08400 0.99765 0.92413 0.95968 0.90193 0.90497 0.93034 0.89761 0.96188 0.89304 0.95534 0.78204 0.94080 0.91189 0.93653 0.87810 0.91370 0.88005 0.88021 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.57 127.69 1.22 1.77 16 2 N -0.55 -16.07 4.89 -948.86 -4.64 -20.70 16 3 C 0.03 0.73 9.32 127.69 1.19 1.93 16 4 C 0.03 1.12 4.62 86.30 0.40 1.52 16 5 C 0.11 4.34 3.08 30.59 0.09 4.44 16 6 H 0.06 2.68 6.55 -2.38 -0.02 2.67 16 7 O -0.55 -20.38 12.76 -148.98 -1.90 -22.28 16 8 C 0.13 5.63 4.99 86.38 0.43 6.06 16 9 N -0.56 -27.61 2.74 -678.04 -1.86 -29.47 16 10 C -0.26 -14.24 8.08 84.03 0.68 -13.56 16 11 H 0.05 2.60 7.30 -2.91 -0.02 2.58 16 12 C -0.03 -1.61 4.97 84.86 0.42 -1.19 16 13 N -0.92 -52.06 11.45 21.65 0.25 -51.81 16 14 Si 0.95 44.59 29.60 68.60 2.03 46.62 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 18 C 0.12 5.02 6.21 44.99 0.28 5.29 16 19 C -0.20 -8.17 9.80 30.62 0.30 -7.87 16 20 C -0.20 -7.68 10.14 30.62 0.31 -7.36 16 21 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 23 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 24 H 0.05 1.74 6.47 -2.38 -0.02 1.73 16 25 H 0.08 2.04 8.12 -2.38 -0.02 2.02 16 26 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 2.52 8.06 -2.38 -0.02 2.50 16 28 H 0.03 0.92 8.12 -2.39 -0.02 0.90 16 29 H 0.37 10.92 9.05 -74.06 -0.67 10.25 16 30 H 0.04 1.69 8.04 -2.39 -0.02 1.67 16 31 H 0.07 3.62 5.52 -2.39 -0.01 3.61 16 32 H 0.25 13.99 8.32 -92.71 -0.77 13.21 16 33 H 0.10 3.94 8.10 -2.39 -0.02 3.92 16 34 H 0.07 3.15 6.89 -2.39 -0.02 3.13 16 35 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 Total: -1.00 -61.72 301.03 -0.42 -62.14 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.37 Total: 24.48 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.33 Total: -8.98 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -6.25 Total: -101.98 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.90 Total: -22.28 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -61.72 -0.42 -62.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685974518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.420 kcal (2) G-P(sol) polarization free energy of solvation -61.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds