Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46905 * 111.00214 * 2 1 4 4 C 1.46896 * 111.00435 * 123.95874 * 2 1 3 5 5 C 1.53004 * 109.47359 * 66.04267 * 4 2 1 6 6 H 1.09002 * 109.46960 * 305.00378 * 5 4 2 7 7 O 1.42896 * 109.46744 * 65.00291 * 5 4 2 8 8 C 1.52994 * 109.47238 * 185.00064 * 5 4 2 9 9 N 1.46501 * 109.47032 * 179.97438 * 8 5 4 10 10 C 1.36937 * 119.99668 * 90.00320 * 9 8 5 11 11 H 1.08003 * 119.99664 * 216.79850 * 10 9 8 12 12 C 1.38806 * 120.00207 * 36.80524 * 10 9 8 13 13 N 1.31624 * 120.00033 * 21.11220 * 12 10 9 14 14 Si 1.86803 * 120.00204 * 201.11613 * 12 10 9 15 15 H 1.48499 * 109.47232 * 89.99688 * 14 12 10 16 16 H 1.48499 * 109.47252 * 209.99872 * 14 12 10 17 17 H 1.48502 * 109.46623 * 329.99697 * 14 12 10 18 18 C 1.46496 * 120.00129 * 269.99985 * 9 8 5 19 19 C 1.53002 * 117.49900 * 194.50673 * 18 9 8 20 20 C 1.53000 * 117.49920 * 125.84684 * 18 9 8 21 21 H 1.08994 * 109.47539 * 59.99783 * 1 2 3 22 22 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47241 * 299.99457 * 1 2 3 24 24 H 1.08995 * 109.46517 * 63.95617 * 3 2 1 25 25 H 1.08996 * 109.46912 * 183.95684 * 3 2 1 26 26 H 1.09002 * 109.46824 * 303.95662 * 3 2 1 27 27 H 1.08998 * 109.47617 * 186.04708 * 4 2 1 28 28 H 1.09006 * 109.46877 * 306.04453 * 4 2 1 29 29 H 0.96697 * 114.00583 * 60.00352 * 7 5 4 30 30 H 1.09002 * 109.47402 * 300.00044 * 8 5 4 31 31 H 1.09002 * 109.47251 * 60.00083 * 8 5 4 32 32 H 0.97001 * 119.99823 * 174.81951 * 13 12 10 33 33 H 1.09002 * 115.55073 * 340.17829 * 18 9 8 34 34 H 1.08994 * 117.49641 * 0.02562 * 19 18 9 35 35 H 1.09003 * 117.49476 * 145.02455 * 19 18 9 36 36 H 1.09005 * 117.50255 * 214.98472 * 20 18 9 37 37 H 1.08998 * 117.49701 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 1 0.5532 -2.3390 0.8432 7 8 2.2956 -2.7695 -0.1802 8 6 2.0701 -3.0200 2.2128 9 7 1.7210 -4.4338 2.0529 10 6 2.6136 -5.2986 1.4780 11 1 2.2601 -6.0904 0.8341 12 6 3.9726 -5.1577 1.7228 13 7 4.3851 -4.5025 2.7872 14 14 5.2162 -5.8977 0.5416 15 1 5.5549 -4.9032 -0.5079 16 1 6.4459 -6.2697 1.2864 17 1 4.6363 -7.1088 -0.0928 18 6 0.4171 -4.9224 2.5081 19 6 0.2340 -6.4363 2.6323 20 6 -0.4492 -5.6731 1.4947 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.7044 1.8723 0.9233 25 1 3.0827 1.3432 -0.0709 26 1 1.5897 1.9163 -0.8524 27 1 3.0797 -0.6611 1.1755 28 1 1.5611 -0.3873 2.0627 29 1 3.2601 -2.7167 -0.1362 30 1 3.1484 -2.9237 2.3399 31 1 1.5635 -2.6181 3.0904 32 1 5.3310 -4.4680 2.9991 33 1 -0.0928 -4.2923 3.2370 34 1 1.0838 -7.0687 2.3757 35 1 -0.3967 -6.8022 3.4426 36 1 -1.5289 -5.5372 1.5570 37 1 -0.0490 -5.8031 0.4892 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685974519.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -12.871990 kcal Electronic energy + Delta-G solvation = -16964.318550 eV Core-core repulsion = 14356.765261 eV Total energy + Delta-G solvation = -2607.553289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59806 -38.35835 -36.67423 -34.96377 -32.66884 -30.61625 -28.47199 -27.45866 -25.59001 -23.21575 -22.94301 -21.79564 -21.59597 -18.45102 -17.44432 -16.88034 -16.66584 -16.16139 -16.07921 -15.66239 -15.54546 -15.04415 -14.55428 -13.98151 -13.57333 -13.21452 -12.98292 -12.90126 -12.67608 -12.63513 -12.47079 -12.38423 -12.27457 -12.15430 -11.84745 -11.53735 -11.36960 -10.93653 -10.56525 -10.38058 -9.19048 -8.34979 -7.77627 -5.34888 1.46679 1.50924 1.57677 2.51575 2.98818 3.19081 3.47636 3.54137 3.89262 4.05017 4.26928 4.30349 4.34894 4.48274 4.50297 4.56980 4.61749 4.70587 4.78257 4.82144 4.85601 4.95610 5.00062 5.04151 5.09563 5.24183 5.37095 5.56010 5.71124 5.78944 6.08704 6.18730 6.52284 7.06885 7.23152 7.89726 8.40278 9.18133 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.021521 B = 0.010008 C = 0.007714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.736389 B = 2797.108176 C = 3629.045320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.557 5.557 3 C 0.026 3.974 4 C 0.035 3.965 5 C 0.107 3.893 6 H 0.075 0.925 7 O -0.553 6.553 8 C 0.120 3.880 9 N -0.559 5.559 10 C -0.233 4.233 11 H 0.041 0.959 12 C -0.029 4.029 13 N -0.920 5.920 14 Si 0.951 3.049 15 H -0.278 1.278 16 H -0.296 1.296 17 H -0.282 1.282 18 C 0.102 3.898 19 C -0.195 4.195 20 C -0.207 4.207 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.029 0.971 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.364 0.636 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.252 0.748 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 8.797 -2.010 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.122 4.122 4 C -0.094 4.094 5 C 0.045 3.955 6 H 0.093 0.907 7 O -0.357 6.357 8 C -0.007 4.007 9 N -0.275 5.275 10 C -0.364 4.364 11 H 0.059 0.941 12 C -0.225 4.225 13 N -0.565 5.565 14 Si 0.780 3.220 15 H -0.204 1.204 16 H -0.223 1.223 17 H -0.208 1.208 18 C -0.007 4.007 19 C -0.234 4.234 20 C -0.247 4.247 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.209 0.791 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.720 8.565 -2.598 11.192 hybrid contribution 1.146 -0.150 0.475 1.249 sum -5.574 8.415 -2.122 10.315 Atomic orbital electron populations 1.22409 0.86933 1.01839 1.01101 1.61887 1.08690 1.14300 1.43198 1.22417 1.00779 0.88002 1.00990 1.22717 1.00212 0.94725 0.91747 1.22467 0.96126 0.89712 0.87173 0.90680 1.86467 1.22623 1.85169 1.41428 1.21591 1.02226 0.82951 0.93957 1.43372 1.12400 1.03922 1.67816 1.18827 0.86968 1.10528 1.20066 0.94119 1.25571 0.98976 1.00523 0.97439 1.69993 1.14539 1.46686 1.25306 0.85548 0.78704 0.78456 0.79301 1.20448 1.22296 1.20795 1.21424 0.88791 0.92510 0.97951 1.23071 1.02482 0.96619 1.01258 1.23288 0.98563 1.08230 0.94656 0.90302 0.92410 0.95025 0.95249 0.91598 0.90240 0.91184 0.93818 0.79061 0.90518 0.94483 0.93828 0.87592 0.91250 0.87872 0.87682 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.41 127.69 1.20 1.84 16 2 N -0.56 -16.20 4.97 -948.86 -4.71 -20.91 16 3 C 0.03 0.59 9.57 127.69 1.22 1.81 16 4 C 0.04 1.12 4.60 86.31 0.40 1.52 16 5 C 0.11 4.15 3.20 30.59 0.10 4.25 16 6 H 0.08 2.97 6.26 -2.39 -0.01 2.95 16 7 O -0.55 -24.27 12.56 -148.98 -1.87 -26.14 16 8 C 0.12 5.33 5.05 86.38 0.44 5.76 16 9 N -0.56 -27.26 2.74 -678.04 -1.86 -29.12 16 10 C -0.23 -12.59 7.42 84.03 0.62 -11.96 16 11 H 0.04 2.32 7.16 -2.91 -0.02 2.30 16 12 C -0.03 -1.54 4.97 84.86 0.42 -1.12 16 13 N -0.92 -51.49 11.39 21.65 0.25 -51.25 16 14 Si 0.95 44.52 29.61 68.60 2.03 46.55 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 C 0.10 4.30 6.61 44.99 0.30 4.60 16 19 C -0.20 -7.78 9.81 30.62 0.30 -7.48 16 20 C -0.21 -7.88 10.08 30.62 0.31 -7.57 16 21 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.06 1.65 6.21 -2.38 -0.01 1.63 16 23 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 26 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 2.29 8.06 -2.39 -0.02 2.28 16 28 H 0.04 1.31 8.12 -2.38 -0.02 1.29 16 29 H 0.36 15.54 9.05 -74.06 -0.67 14.87 16 30 H 0.08 3.87 5.45 -2.39 -0.01 3.86 16 31 H 0.04 1.55 8.04 -2.39 -0.02 1.53 16 32 H 0.25 13.74 8.32 -92.71 -0.77 12.97 16 33 H 0.11 3.98 8.10 -2.39 -0.02 3.97 16 34 H 0.07 3.17 6.95 -2.39 -0.02 3.15 16 35 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.10 3.28 8.14 -2.38 -0.02 3.26 16 37 H 0.06 2.69 7.98 -2.39 -0.02 2.67 16 Total: -1.00 -60.29 299.95 -0.49 -60.78 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.37 Total: 28.45 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.31 Total: -8.36 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -6.32 Total: -101.28 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.87 Total: -26.14 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -60.29 -0.49 -60.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685974519.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.907 kcal (2) G-P(sol) polarization free energy of solvation -60.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds