Wall clock time and date at job start Mon Mar 30 2020 03:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30502 * 1 3 3 Si 1.86805 * 119.99699 * 2 1 4 4 H 1.48490 * 109.47287 * 274.98619 * 3 2 1 5 5 H 1.48502 * 109.47264 * 34.99400 * 3 2 1 6 6 H 1.48502 * 109.46751 * 154.98676 * 3 2 1 7 7 C 1.40402 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99903 * 186.22505 * 7 2 1 9 9 C 1.41715 * 119.99764 * 6.22558 * 7 2 1 10 10 O 1.21769 * 120.00496 * 353.69939 * 9 7 2 11 11 C 1.47897 * 119.99848 * 173.70255 * 9 7 2 12 12 N 1.32922 * 119.75503 * 0.02562 * 11 9 7 13 13 C 1.31525 * 121.62824 * 179.97438 * 12 11 9 14 14 Cl 1.73607 * 119.51727 * 180.02562 * 13 12 11 15 15 C 1.38940 * 120.96562 * 0.02562 * 13 12 11 16 16 C 1.38464 * 119.40434 * 359.72124 * 15 13 12 17 17 C 1.38913 * 118.49425 * 0.54298 * 16 15 13 18 18 F 1.35102 * 120.49154 * 179.72795 * 17 16 15 19 19 H 0.97005 * 119.99892 * 359.97438 * 1 2 3 20 20 H 1.07999 * 120.29800 * 179.97438 * 15 13 12 21 21 H 1.07999 * 120.75178 * 180.30384 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3050 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 2.3811 2.1074 -1.3947 5 1 1.4931 2.6200 0.8029 6 1 3.5852 1.4121 0.5920 7 6 2.0071 -1.2159 -0.0005 8 1 3.0823 -1.2187 0.1009 9 6 1.3047 -2.4395 -0.1342 10 8 0.0871 -2.4459 -0.1332 11 6 2.0508 -3.7088 -0.2748 12 7 3.3799 -3.6962 -0.2748 13 6 4.0801 -4.8029 -0.3970 14 17 5.8143 -4.7230 -0.3892 15 6 3.4522 -6.0349 -0.5321 16 6 2.0689 -6.0965 -0.5322 17 6 1.3528 -4.9128 -0.4074 18 9 0.0018 -4.9255 -0.4081 19 1 -0.4850 0.8401 0.0004 20 1 4.0378 -6.9368 -0.6321 21 1 1.5583 -7.0430 -0.6309 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690316727.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:42 Heat of formation + Delta-G solvation = -80.458332 kcal Electronic energy + Delta-G solvation = -13191.780806 eV Core-core repulsion = 10393.327667 eV Total energy + Delta-G solvation = -2798.453139 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 229.005 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.90145 -41.10557 -38.63422 -37.57221 -34.89764 -33.75832 -31.69623 -29.14487 -25.77115 -24.38989 -22.20337 -19.14175 -18.63463 -18.19956 -17.84238 -16.90304 -16.78440 -15.53270 -15.18579 -15.07944 -14.91583 -14.27636 -14.11989 -13.78228 -13.36866 -12.83399 -12.49319 -12.41864 -12.29880 -12.05370 -11.08251 -10.98646 -10.94597 -9.81118 -9.72539 -8.46519 -7.15642 -0.47296 -0.06950 0.70316 1.33332 1.36697 1.55128 1.94262 2.18980 2.55511 2.95598 3.40846 3.51158 3.63774 3.75378 4.11743 4.48432 4.68486 4.76112 5.13584 5.42098 5.99543 6.47354 6.59162 6.68394 8.06809 8.36284 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.010082 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.575850 B = 2776.616175 C = 3838.948268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.021 3.979 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.261 1.261 6 H -0.250 1.250 7 C -0.507 4.507 8 H 0.092 0.908 9 C 0.357 3.643 10 O -0.576 6.576 11 C 0.059 3.941 12 N -0.450 5.450 13 C 0.142 3.858 14 Cl -0.016 7.016 15 C -0.108 4.108 16 C -0.087 4.087 17 C 0.051 3.949 18 F -0.127 7.127 19 H 0.287 0.713 20 H 0.204 0.796 21 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -9.651 -1.285 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.199 4.199 3 Si 0.817 3.183 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.173 1.173 7 C -0.538 4.538 8 H 0.111 0.889 9 C 0.257 3.743 10 O -0.469 6.469 11 C -0.078 4.078 12 N -0.163 5.163 13 C -0.026 4.026 14 Cl 0.012 6.988 15 C -0.129 4.129 16 C -0.113 4.113 17 C 0.029 3.971 18 F -0.105 7.105 19 H 0.098 0.902 20 H 0.221 0.779 21 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 9.433 -8.814 -1.191 12.965 hybrid contribution -0.416 0.073 -0.057 0.426 sum 9.017 -8.741 -1.248 12.620 Atomic orbital electron populations 1.70064 1.09904 1.30446 1.29960 1.27350 0.95575 1.05617 0.91383 0.84979 0.79104 0.74398 0.79824 1.18167 1.18519 1.17287 1.21400 0.96675 0.91848 1.43830 0.88944 1.18511 0.87952 0.86928 0.80922 1.90530 1.15753 1.87839 1.52733 1.23141 0.89111 0.97025 0.98532 1.67085 1.06578 1.31346 1.11281 1.22306 0.88504 0.90707 1.01071 1.98380 1.05176 1.98638 1.96569 1.22282 0.93718 0.98168 0.98703 1.22039 0.94021 0.97648 0.97576 1.19406 0.78398 0.95814 1.03519 1.91522 1.28509 1.97175 1.93339 0.90197 0.77909 0.78166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -45.90 11.76 21.90 0.26 -45.64 14 2 C 0.02 1.14 5.50 85.42 0.47 1.61 14 3 Si 1.00 40.26 29.57 68.60 2.03 42.29 14 4 H -0.26 -9.85 7.11 99.48 0.71 -9.15 14 5 H -0.26 -9.81 7.11 99.48 0.71 -9.10 14 6 H -0.25 -9.62 7.11 99.48 0.71 -8.92 14 7 C -0.51 -29.68 9.00 23.66 0.21 -29.47 14 8 H 0.09 5.13 7.38 -2.91 -0.02 5.11 14 9 C 0.36 21.75 6.91 25.69 0.18 21.93 14 10 O -0.58 -38.97 13.89 -4.57 -0.06 -39.03 14 11 C 0.06 2.93 6.74 41.92 0.28 3.21 14 12 N -0.45 -19.84 9.43 -175.49 -1.65 -21.49 14 13 C 0.14 4.67 7.27 84.91 0.62 5.28 14 14 Cl -0.02 -0.43 29.10 -2.72 -0.08 -0.51 14 15 C -0.11 -2.63 9.88 22.49 0.22 -2.41 14 16 C -0.09 -2.39 10.16 22.49 0.23 -2.16 14 17 C 0.05 2.14 7.32 22.81 0.17 2.31 14 18 F -0.13 -5.99 15.55 44.97 0.70 -5.29 14 19 H 0.29 15.02 8.29 -92.70 -0.77 14.25 14 20 H 0.20 2.69 8.06 -2.91 -0.02 2.66 14 21 H 0.20 3.48 8.06 -2.91 -0.02 3.46 14 Total: -1.00 -75.89 225.17 4.85 -71.04 By element: Atomic # 1 Polarization: -2.96 SS G_CDS: 1.28 Total: -1.68 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 2.38 Total: 0.31 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.40 Total: -67.13 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.06 Total: -39.03 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.70 Total: -5.29 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -75.89 4.85 -71.04 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690316727.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.415 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds