Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46294 * 114.00426 * 2 1 4 4 C 1.46847 * 111.00121 * 120.00149 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83499 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 N 1.46896 * 109.52180 * 177.56207 * 6 5 4 8 8 C 1.46904 * 111.00003 * 298.95364 * 7 6 5 9 9 C 1.46896 * 111.00058 * 175.00308 * 7 6 5 10 10 C 1.50702 * 109.47355 * 189.99789 * 9 7 6 11 11 H 1.07997 * 119.99388 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00213 * 179.97438 * 10 9 7 13 13 N 1.31508 * 119.99961 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99750 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47331 * 89.99914 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99934 * 14 12 10 17 17 H 1.48498 * 109.47336 * 329.99500 * 14 12 10 18 18 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 19 19 C 1.46830 * 110.98381 * 244.21706 * 3 2 1 20 20 H 1.08998 * 109.47065 * 300.00236 * 1 2 3 21 21 H 1.09002 * 109.46855 * 59.99834 * 1 2 3 22 22 H 1.08997 * 109.47718 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46448 * 65.82221 * 4 3 2 24 24 H 1.08994 * 109.45958 * 305.84586 * 4 3 2 25 25 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 26 26 H 1.09002 * 109.49779 * 180.84687 * 5 4 3 27 27 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 28 28 H 1.09005 * 109.47010 * 60.00066 * 8 7 6 29 29 H 1.08997 * 109.47284 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47309 * 300.00275 * 8 7 6 31 31 H 1.09000 * 109.46849 * 309.99997 * 9 7 6 32 32 H 1.09004 * 109.47501 * 69.99558 * 9 7 6 33 33 H 0.96998 * 119.99866 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.50037 * 62.28538 * 18 6 5 35 35 H 1.08996 * 109.50157 * 182.36309 * 18 6 5 36 36 H 1.08995 * 109.46742 * 54.13780 * 19 3 2 37 37 H 1.09004 * 109.45381 * 294.16115 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8644 1.5383 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1497 3.2904 -0.0426 7 7 4.5699 4.6979 -0.0359 8 6 3.4064 5.5945 -0.0123 9 6 5.4389 4.9934 -1.1828 10 6 6.0450 6.3628 -1.0143 11 1 5.8085 6.9542 -0.1422 12 6 6.9021 6.8601 -1.9730 13 7 7.4314 8.0549 -1.8256 14 14 7.3115 5.8367 -3.4811 15 1 6.3335 6.1304 -4.5591 16 1 8.6803 6.1715 -3.9498 17 1 7.2465 4.3945 -3.1331 18 6 3.2669 3.0256 -1.2655 19 6 2.7827 1.5742 -1.2345 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 3.7230 0.8683 1.1427 24 1 2.2831 1.3246 2.0841 25 1 2.4932 3.6588 1.2870 26 1 3.9869 3.1345 2.1017 27 1 5.0287 2.6469 -0.0818 28 1 2.8170 5.4015 0.8841 29 1 3.7459 6.6303 -0.0083 30 1 2.7930 5.4171 -0.8956 31 1 6.2330 4.2488 -1.2381 32 1 4.8512 4.9665 -2.1005 33 1 8.0347 8.4046 -2.4999 34 1 2.4079 3.6963 -1.2462 35 1 3.8431 3.1983 -2.1744 36 1 2.1423 1.3864 -2.0962 37 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691950971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = 10.899936 kcal Electronic energy + Delta-G solvation = -16663.349917 eV Core-core repulsion = 14056.827456 eV Total energy + Delta-G solvation = -2606.522461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.19599 -36.84399 -34.75075 -32.46413 -30.89419 -29.94590 -27.69503 -26.31413 -25.06479 -23.20207 -22.34368 -20.45933 -18.93607 -17.32768 -16.82788 -15.50035 -15.30594 -14.97564 -14.54428 -14.18595 -14.05376 -13.58412 -13.40668 -13.08229 -12.88358 -12.39629 -12.17346 -11.99027 -11.61539 -11.22051 -11.02977 -10.97429 -10.66547 -10.56027 -10.39118 -10.02487 -9.92758 -9.77358 -9.28162 -8.73511 -8.58033 -7.33944 -6.05668 -4.02725 2.51816 3.26979 3.35077 3.36500 4.41178 4.59081 4.76132 5.00514 5.12296 5.21679 5.27117 5.35319 5.36583 5.40723 5.46454 5.58039 5.67374 5.69501 5.84915 5.86565 5.96555 6.15594 6.17300 6.19879 6.36467 6.53976 6.71817 6.77580 6.87590 6.96772 7.02578 7.59912 7.90252 8.05246 8.65723 9.03238 9.56213 11.07572 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.046975 B = 0.006137 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.918500 B = 4561.094096 C = 4886.741770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.273 6.273 3 N -0.362 5.362 4 C 0.046 3.954 5 C -0.105 4.105 6 C 0.078 3.922 7 N -0.522 5.522 8 C 0.030 3.970 9 C 0.161 3.839 10 C -0.509 4.509 11 H 0.081 0.919 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.874 3.126 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.267 1.267 18 C -0.150 4.150 19 C 0.048 3.952 20 H 0.043 0.957 21 H 0.042 0.958 22 H 0.084 0.916 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.017 0.983 31 H 0.026 0.974 32 H -0.014 1.014 33 H 0.263 0.737 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.883 -13.632 2.919 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.276 6.276 3 N -0.132 5.132 4 C -0.083 4.083 5 C -0.143 4.143 6 C -0.032 4.032 7 N -0.244 5.244 8 C -0.119 4.119 9 C 0.035 3.965 10 C -0.547 4.547 11 H 0.099 0.901 12 C -0.133 4.133 13 N -0.540 5.540 14 Si 0.701 3.299 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.192 1.192 18 C -0.189 4.189 19 C -0.080 4.080 20 H 0.062 0.938 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.004 0.996 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.747 -13.272 3.284 18.026 hybrid contribution 0.343 -1.069 -1.755 2.084 sum -11.405 -14.341 1.528 18.387 Atomic orbital electron populations 1.22558 0.81018 1.01258 1.00507 1.90651 1.20545 1.19519 1.96900 1.67593 1.34919 1.07161 1.03557 1.22403 0.95608 0.97638 0.92649 1.21689 1.00151 0.93589 0.98907 1.21842 0.96214 0.92401 0.92750 1.62174 1.17053 1.00177 1.45017 1.22347 0.92040 0.99039 0.98439 1.20195 0.91576 0.98047 0.86708 1.21049 1.26489 0.99214 1.07962 0.90118 1.24892 0.95671 0.94830 0.97905 1.69888 1.31847 1.16844 1.35384 0.86882 0.77953 0.81288 0.83745 1.20352 1.21145 1.19222 1.22370 1.01049 0.94462 1.01058 1.22340 0.96556 0.97324 0.91817 0.93837 0.93944 0.89786 0.93820 0.90132 0.90651 0.89778 0.90689 0.93021 0.90291 0.96505 0.95571 0.99628 0.92672 0.90419 0.90397 0.90482 0.93884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.51 101.05 1.16 1.61 16 2 O -0.27 -3.71 10.96 -13.92 -0.15 -3.86 16 3 N -0.36 -5.00 4.99 -113.83 -0.57 -5.57 16 4 C 0.05 0.59 5.99 -3.83 -0.02 0.57 16 5 C -0.11 -1.46 5.24 -26.65 -0.14 -1.60 16 6 C 0.08 1.29 2.29 -67.59 -0.15 1.13 16 7 N -0.52 -10.64 4.74 -236.18 -1.12 -11.76 16 8 C 0.03 0.55 8.63 60.07 0.52 1.07 16 9 C 0.16 3.84 3.24 -4.98 -0.02 3.83 16 10 C -0.51 -14.36 9.01 -34.44 -0.31 -14.67 16 11 H 0.08 2.48 7.37 -52.49 -0.39 2.09 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.52 13.96 55.43 0.77 -26.74 16 14 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 18 C -0.15 -2.30 4.69 -26.65 -0.12 -2.43 16 19 C 0.05 0.67 5.99 -3.84 -0.02 0.65 16 20 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 21 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.07 1.05 6.31 -51.93 -0.33 0.72 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.07 1.28 8.03 -51.93 -0.42 0.87 16 28 H 0.05 0.83 6.28 -51.93 -0.33 0.51 16 29 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 30 H 0.02 0.30 6.23 -51.93 -0.32 -0.02 16 31 H 0.03 0.64 7.06 -51.93 -0.37 0.27 16 32 H -0.01 -0.33 6.43 -51.93 -0.33 -0.66 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.08 1.21 6.26 -51.93 -0.33 0.89 16 35 H 0.08 1.28 6.89 -51.93 -0.36 0.92 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 286.01 15.07 4.31 4.31 Total: -1.00 -30.47 286.01 -6.70 -37.17 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -6.06 Total: -2.34 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.79 Total: -7.97 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.92 Total: -44.07 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.15 Total: -3.86 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.47 -6.70 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691950971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.072 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds