Wall clock time and date at job start Mon Mar 30 2020 03:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46294 * 114.00426 * 2 1 4 4 C 1.46847 * 111.00121 * 120.00149 * 3 2 1 5 5 C 1.53044 * 109.51335 * 185.83499 * 4 3 2 6 6 C 1.53117 * 109.27792 * 300.82256 * 5 4 3 7 7 N 1.46896 * 109.52180 * 177.56207 * 6 5 4 8 8 C 1.46904 * 111.00003 * 298.95364 * 7 6 5 9 9 C 1.46896 * 111.00058 * 175.00308 * 7 6 5 10 10 C 1.50702 * 109.47355 * 189.99789 * 9 7 6 11 11 H 1.07997 * 119.99388 * 0.02562 * 10 9 7 12 12 C 1.37879 * 120.00213 * 179.97438 * 10 9 7 13 13 N 1.31508 * 119.99961 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99750 * 0.02562 * 12 10 9 15 15 H 1.48491 * 109.47331 * 89.99914 * 14 12 10 16 16 H 1.48504 * 109.46935 * 209.99934 * 14 12 10 17 17 H 1.48498 * 109.47336 * 329.99500 * 14 12 10 18 18 C 1.53127 * 109.15989 * 57.65607 * 6 5 4 19 19 C 1.46830 * 110.98381 * 244.21706 * 3 2 1 20 20 H 1.08998 * 109.47065 * 300.00236 * 1 2 3 21 21 H 1.09002 * 109.46855 * 59.99834 * 1 2 3 22 22 H 1.08997 * 109.47718 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46448 * 65.82221 * 4 3 2 24 24 H 1.08994 * 109.45958 * 305.84586 * 4 3 2 25 25 H 1.09001 * 109.49858 * 60.76701 * 5 4 3 26 26 H 1.09002 * 109.49779 * 180.84687 * 5 4 3 27 27 H 1.09004 * 109.52347 * 297.75632 * 6 5 4 28 28 H 1.09005 * 109.47010 * 60.00066 * 8 7 6 29 29 H 1.08997 * 109.47284 * 180.02562 * 8 7 6 30 30 H 1.08999 * 109.47309 * 300.00275 * 8 7 6 31 31 H 1.09000 * 109.46849 * 309.99997 * 9 7 6 32 32 H 1.09004 * 109.47501 * 69.99558 * 9 7 6 33 33 H 0.96998 * 119.99866 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.50037 * 62.28538 * 18 6 5 35 35 H 1.08996 * 109.50157 * 182.36309 * 18 6 5 36 36 H 1.08995 * 109.46742 * 54.13780 * 19 3 2 37 37 H 1.09004 * 109.45381 * 294.16115 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3364 0.0000 4 6 2.8644 1.5383 1.1872 5 6 3.3510 2.9888 1.2285 6 6 4.1497 3.2904 -0.0426 7 7 4.5699 4.6979 -0.0359 8 6 3.4064 5.5945 -0.0123 9 6 5.4389 4.9934 -1.1828 10 6 6.0450 6.3628 -1.0143 11 1 5.8085 6.9542 -0.1422 12 6 6.9021 6.8601 -1.9730 13 7 7.4314 8.0549 -1.8256 14 14 7.3115 5.8367 -3.4811 15 1 6.3335 6.1304 -4.5591 16 1 8.6803 6.1715 -3.9498 17 1 7.2465 4.3945 -3.1331 18 6 3.2669 3.0256 -1.2655 19 6 2.7827 1.5742 -1.2345 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 3.7230 0.8683 1.1427 24 1 2.2831 1.3246 2.0841 25 1 2.4932 3.6588 1.2870 26 1 3.9869 3.1345 2.1017 27 1 5.0287 2.6469 -0.0818 28 1 2.8170 5.4015 0.8841 29 1 3.7459 6.6303 -0.0083 30 1 2.7930 5.4171 -0.8956 31 1 6.2330 4.2488 -1.2381 32 1 4.8512 4.9665 -2.1005 33 1 8.0347 8.4046 -2.4999 34 1 2.4079 3.6963 -1.2462 35 1 3.8431 3.1983 -2.1744 36 1 2.1423 1.3864 -2.0962 37 1 3.6418 0.9040 -1.2674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691950971.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:51 Heat of formation + Delta-G solvation = -11.372520 kcal Electronic energy + Delta-G solvation = -16664.315724 eV Core-core repulsion = 14056.827456 eV Total energy + Delta-G solvation = -2607.488267 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.46705 -38.03517 -36.04525 -34.52119 -32.02389 -31.34365 -29.46835 -27.38232 -26.48731 -24.46317 -23.73869 -22.02055 -20.24423 -19.03710 -18.25110 -16.69939 -16.47365 -16.45089 -16.20968 -15.57089 -15.12638 -14.95739 -14.75579 -14.48100 -14.28118 -14.03286 -13.44139 -13.20231 -13.13876 -12.72669 -12.60649 -12.41368 -12.09047 -11.96406 -11.79198 -11.70305 -11.42280 -11.26128 -10.93068 -10.77690 -9.76631 -8.94176 -8.27592 -6.30423 1.33852 1.35933 1.46295 1.54565 2.34405 3.05426 3.21297 3.63010 3.83235 3.93615 4.10726 4.25472 4.30248 4.42076 4.54694 4.62319 4.64806 4.68060 4.68996 4.75466 4.79931 4.86403 4.89563 4.91732 4.99187 5.10258 5.15784 5.25271 5.37356 5.55766 5.73057 6.00946 6.03818 6.39181 6.67621 6.76397 7.33171 8.89144 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.046975 B = 0.006137 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.918500 B = 4561.094096 C = 4886.741770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.286 6.286 3 N -0.369 5.369 4 C 0.050 3.950 5 C -0.095 4.095 6 C 0.076 3.924 7 N -0.538 5.538 8 C 0.036 3.964 9 C 0.173 3.827 10 C -0.516 4.516 11 H 0.039 0.961 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.944 3.056 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.250 1.250 18 C -0.142 4.142 19 C 0.054 3.946 20 H 0.048 0.952 21 H 0.043 0.957 22 H 0.108 0.892 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.024 0.976 32 H -0.009 1.009 33 H 0.266 0.734 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.123 -15.952 2.442 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.291 6.291 3 N -0.139 5.139 4 C -0.078 4.078 5 C -0.134 4.134 6 C -0.033 4.033 7 N -0.261 5.261 8 C -0.112 4.112 9 C 0.046 3.954 10 C -0.554 4.554 11 H 0.057 0.943 12 C -0.188 4.188 13 N -0.589 5.589 14 Si 0.768 3.232 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.173 1.173 18 C -0.181 4.181 19 C -0.075 4.075 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.126 0.874 23 H 0.060 0.940 24 H 0.115 0.885 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.009 0.991 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.012 -15.608 2.823 20.516 hybrid contribution 0.654 -0.331 -1.502 1.672 sum -12.359 -15.940 1.321 20.213 Atomic orbital electron populations 1.22782 0.79263 1.02971 1.00793 1.90637 1.22458 1.18980 1.96993 1.67578 1.34913 1.07880 1.03502 1.22365 0.95780 0.96544 0.93153 1.21593 0.99768 0.94540 0.97451 1.21922 0.96760 0.89696 0.94924 1.62055 1.17850 1.02650 1.43501 1.22278 0.91736 0.96909 1.00301 1.19917 0.92075 0.95194 0.88256 1.21302 1.26660 1.00928 1.06527 0.94314 1.25817 0.95510 0.96011 1.01509 1.70045 1.32991 1.18959 1.36938 0.85760 0.77870 0.80232 0.79373 1.19205 1.20770 1.17348 1.22235 1.00465 0.95701 0.99742 1.22235 0.96740 0.95940 0.92552 0.93363 0.93811 0.87367 0.93977 0.88483 0.90385 0.89401 0.91254 0.90117 0.93609 0.95599 0.95768 0.99144 0.92469 0.90505 0.91504 0.89491 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 11.51 113.37 1.30 1.97 16 2 O -0.29 -6.98 10.96 -50.14 -0.55 -7.53 16 3 N -0.37 -9.20 4.99 -514.04 -2.57 -11.76 16 4 C 0.05 1.16 5.99 86.33 0.52 1.67 16 5 C -0.10 -2.44 5.24 30.65 0.16 -2.27 16 6 C 0.08 2.40 2.29 45.00 0.10 2.50 16 7 N -0.54 -21.64 4.74 -901.12 -4.27 -25.92 16 8 C 0.04 1.32 8.63 127.69 1.10 2.42 16 9 C 0.17 8.18 3.24 85.56 0.28 8.46 16 10 C -0.52 -29.82 9.01 25.60 0.23 -29.59 16 11 H 0.04 2.50 7.37 -2.91 -0.02 2.48 16 12 C 0.01 0.51 5.47 84.66 0.46 0.97 16 13 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 14 Si 0.94 43.99 27.47 68.60 1.88 45.88 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 18 C -0.14 -4.09 4.69 30.65 0.14 -3.95 16 19 C 0.05 1.37 5.99 86.33 0.52 1.89 16 20 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 21 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 25 H 0.08 1.96 6.31 -2.39 -0.02 1.95 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.07 2.27 8.03 -2.38 -0.02 2.25 16 28 H 0.08 2.48 6.28 -2.38 -0.01 2.47 16 29 H 0.05 1.98 6.76 -2.39 -0.02 1.96 16 30 H 0.03 0.90 6.23 -2.39 -0.01 0.88 16 31 H 0.02 1.16 7.06 -2.39 -0.02 1.14 16 32 H -0.01 -0.42 6.43 -2.38 -0.02 -0.43 16 33 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 34 H 0.08 2.23 6.26 -2.39 -0.01 2.21 16 35 H 0.07 2.07 6.89 -2.39 -0.02 2.06 16 36 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -65.94 286.01 0.59 -65.35 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.97 Total: 9.05 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.82 Total: -15.91 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -6.54 Total: -96.84 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.55 Total: -7.53 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -65.94 0.59 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691950971.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.979 kcal (2) G-P(sol) polarization free energy of solvation -65.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds