Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99785 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 6 6 N 1.28801 * 124.98827 * 89.99713 * 5 4 3 7 7 C 1.33652 * 116.05580 * 179.97438 * 6 5 4 8 8 C 1.41153 * 122.86099 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00260 * 180.02562 * 8 7 6 10 10 C 1.39718 * 119.99904 * 0.03594 * 8 7 6 11 11 N 1.31013 * 120.00308 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99881 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47226 * 59.99815 * 12 10 8 14 14 H 1.48497 * 109.46706 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46785 * 299.99840 * 12 10 8 16 16 C 1.37700 * 114.27528 * 0.02562 * 7 6 5 17 17 S 1.70991 * 108.84243 * 359.72086 * 16 7 6 18 18 H 1.09004 * 109.47371 * 299.99984 * 1 2 3 19 19 H 1.09000 * 109.47527 * 60.00229 * 1 2 3 20 20 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47085 * 299.99903 * 3 2 1 22 22 H 1.09001 * 109.47417 * 60.00029 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99990 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99620 * 4 3 2 25 25 H 0.97003 * 120.00362 * 179.97438 * 11 10 8 26 26 H 1.08004 * 125.57831 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0812 3.4084 0.0000 6 7 4.2468 4.1286 1.0549 7 6 4.5445 5.4148 0.8468 8 6 4.7551 6.3321 1.8988 9 1 4.9931 7.3621 1.6777 10 6 4.6559 5.9075 3.2262 11 7 4.3669 4.6582 3.4946 12 14 4.9353 7.1214 4.6185 13 1 3.9459 8.2243 4.5197 14 1 4.7730 6.4266 5.9208 15 1 6.3086 7.6781 4.5215 16 6 4.6270 5.7691 -0.4812 17 16 4.3163 4.3888 -1.4414 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8030 2.2371 -0.8900 22 1 1.8030 2.2372 0.8900 23 1 4.1608 1.4705 0.8909 24 1 4.1616 1.4703 -0.8890 25 1 4.2983 4.3633 4.4162 26 1 4.8552 6.7563 -0.8552 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000696076777.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = 23.436659 kcal Electronic energy + Delta-G solvation = -11407.613486 eV Core-core repulsion = 9317.755549 eV Total energy + Delta-G solvation = -2089.857937 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.88528 -33.88719 -32.59605 -29.04360 -28.65539 -25.64175 -24.36743 -21.13768 -18.66167 -17.70123 -16.06281 -15.25527 -15.13980 -14.54095 -14.08755 -13.68009 -13.28996 -13.09211 -12.93448 -12.14601 -11.74554 -11.60383 -11.40122 -11.13891 -10.76610 -10.73209 -10.39741 -9.88031 -9.70683 -9.28962 -8.05364 -8.00512 -7.56287 -7.37148 -6.55478 -4.38077 1.74495 2.28745 2.71823 2.90405 3.06328 3.08307 3.10827 3.65704 3.99266 4.25503 5.13719 5.15231 5.19812 5.29583 5.41512 5.54606 5.68715 5.80193 6.19631 6.38597 6.80422 7.08582 7.23222 7.48574 8.16530 8.52061 8.86041 9.56426 10.31898 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.028444 B = 0.007524 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.143355 B = 3720.451800 C = 4501.075198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.273 6.273 3 C -0.068 4.068 4 C -0.013 4.013 5 C 0.057 3.943 6 N -0.392 5.392 7 C 0.225 3.775 8 C -0.433 4.433 9 H 0.084 0.916 10 C 0.072 3.928 11 N -0.751 5.751 12 Si 0.912 3.088 13 H -0.266 1.266 14 H -0.278 1.278 15 H -0.265 1.265 16 C -0.455 4.455 17 S -0.042 6.042 18 H 0.076 0.924 19 H 0.075 0.925 20 H 0.097 0.903 21 H 0.081 0.919 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.081 0.919 25 H 0.275 0.725 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.133 -6.229 -3.456 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.047 6.047 3 C -0.218 4.218 4 C -0.055 4.055 5 C -0.228 4.228 6 N -0.106 5.106 7 C 0.103 3.897 8 C -0.467 4.467 9 H 0.102 0.898 10 C -0.150 4.150 11 N -0.374 5.374 12 Si 0.736 3.264 13 H -0.190 1.190 14 H -0.203 1.203 15 H -0.190 1.190 16 C -0.593 4.593 17 S 0.206 5.794 18 H 0.095 0.905 19 H 0.094 0.906 20 H 0.116 0.884 21 H 0.100 0.900 22 H 0.108 0.892 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.587 -7.642 -3.756 9.672 hybrid contribution -0.576 2.410 1.320 2.808 sum -5.163 -5.232 -2.436 7.744 Atomic orbital electron populations 1.23330 0.94475 1.06047 1.04938 1.86694 1.07097 1.12812 1.98129 1.23411 1.00082 0.92610 1.05690 1.19672 0.92526 0.89334 1.03995 1.27530 1.06084 0.99101 0.90106 1.67373 1.11065 1.05287 1.26827 1.18011 0.92972 0.87562 0.91152 1.18936 1.42683 0.96047 0.89030 0.89836 1.25987 0.93177 0.95680 1.00202 1.70088 1.31303 1.15331 1.20706 0.86324 0.79899 0.80798 0.79391 1.19027 1.20274 1.18976 1.25081 1.37530 1.01416 0.95322 1.82641 1.74281 1.05906 1.16614 0.90516 0.90629 0.88392 0.89983 0.89245 0.88781 0.90075 0.91456 0.84524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 10.76 101.05 1.09 -0.18 15 2 S -0.27 -3.88 22.38 -107.50 -2.41 -6.28 15 3 C -0.07 -1.11 5.92 37.16 0.22 -0.89 15 4 C -0.01 -0.23 5.83 -27.89 -0.16 -0.39 15 5 C 0.06 1.31 6.82 -13.55 -0.09 1.22 15 6 N -0.39 -10.55 8.46 -8.35 -0.07 -10.62 15 7 C 0.22 6.31 6.47 -86.16 -0.56 5.75 15 8 C -0.43 -12.00 9.23 -37.92 -0.35 -12.36 15 9 H 0.08 2.20 7.84 -52.49 -0.41 1.79 15 10 C 0.07 1.88 5.49 -17.35 -0.10 1.78 15 11 N -0.75 -20.27 11.69 55.54 0.65 -19.62 15 12 Si 0.91 19.15 29.56 -169.99 -5.02 14.12 15 13 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 14 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 15 H -0.27 -5.50 7.11 56.52 0.40 -5.09 15 16 C -0.45 -11.73 10.98 30.54 0.34 -11.40 15 17 S -0.04 -0.92 23.16 -107.50 -2.49 -3.41 15 18 H 0.08 0.80 8.14 -51.92 -0.42 0.37 15 19 H 0.07 0.73 8.14 -51.92 -0.42 0.31 15 20 H 0.10 0.87 8.14 -51.92 -0.42 0.44 15 21 H 0.08 1.27 8.14 -51.92 -0.42 0.84 15 22 H 0.09 1.58 8.14 -51.92 -0.42 1.16 15 23 H 0.09 1.77 8.14 -51.93 -0.42 1.34 15 24 H 0.08 1.31 8.14 -51.93 -0.42 0.89 15 25 H 0.27 6.77 8.30 -40.82 -0.34 6.43 15 26 H 0.14 3.38 8.06 -52.48 -0.42 2.96 15 LS Contribution 259.27 15.07 3.91 3.91 Total: -1.00 -29.31 259.27 -7.98 -37.29 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -2.93 Total: 1.08 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 0.38 Total: -16.46 kcal Atomic # 7 Polarization: -30.82 SS G_CDS: 0.58 Total: -30.24 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: -4.80 SS G_CDS: -4.90 Total: -9.69 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.31 -7.98 -37.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696076777.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.722 kcal (2) G-P(sol) polarization free energy of solvation -29.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds