Wall clock time and date at job start Mon Mar 30 2020 03:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 102.99785 * 2 1 4 4 C 1.52997 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 6 6 N 1.28801 * 124.98827 * 89.99713 * 5 4 3 7 7 C 1.33652 * 116.05580 * 179.97438 * 6 5 4 8 8 C 1.41153 * 122.86099 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00260 * 180.02562 * 8 7 6 10 10 C 1.39718 * 119.99904 * 0.03594 * 8 7 6 11 11 N 1.31013 * 120.00308 * 359.97438 * 10 8 7 12 12 Si 1.86810 * 119.99881 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47226 * 59.99815 * 12 10 8 14 14 H 1.48497 * 109.46706 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46785 * 299.99840 * 12 10 8 16 16 C 1.37700 * 114.27528 * 0.02562 * 7 6 5 17 17 S 1.70991 * 108.84243 * 359.72086 * 16 7 6 18 18 H 1.09004 * 109.47371 * 299.99984 * 1 2 3 19 19 H 1.09000 * 109.47527 * 60.00229 * 1 2 3 20 20 H 1.09004 * 109.47166 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47085 * 299.99903 * 3 2 1 22 22 H 1.09001 * 109.47417 * 60.00029 * 3 2 1 23 23 H 1.09002 * 109.47153 * 299.99990 * 4 3 2 24 24 H 1.08998 * 109.47533 * 59.99620 * 4 3 2 25 25 H 0.97003 * 120.00362 * 179.97438 * 11 10 8 26 26 H 1.08004 * 125.57831 * 179.97438 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9400 0.0006 5 6 4.0812 3.4084 0.0000 6 7 4.2468 4.1286 1.0549 7 6 4.5445 5.4148 0.8468 8 6 4.7551 6.3321 1.8988 9 1 4.9931 7.3621 1.6777 10 6 4.6559 5.9075 3.2262 11 7 4.3669 4.6582 3.4946 12 14 4.9353 7.1214 4.6185 13 1 3.9459 8.2243 4.5197 14 1 4.7730 6.4266 5.9208 15 1 6.3086 7.6781 4.5215 16 6 4.6270 5.7691 -0.4812 17 16 4.3163 4.3888 -1.4414 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 1.8030 2.2371 -0.8900 22 1 1.8030 2.2372 0.8900 23 1 4.1608 1.4705 0.8909 24 1 4.1616 1.4703 -0.8890 25 1 4.2983 4.3633 4.4162 26 1 4.8552 6.7563 -0.8552 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000696076777.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:02 Heat of formation + Delta-G solvation = 6.295745 kcal Electronic energy + Delta-G solvation = -11408.356772 eV Core-core repulsion = 9317.755549 eV Total energy + Delta-G solvation = -2090.601223 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80424 -35.64316 -34.34169 -30.68500 -29.75708 -27.63213 -25.96011 -22.90931 -20.52895 -19.63390 -17.34932 -17.04213 -16.95086 -15.92085 -15.61703 -15.08780 -14.78789 -14.36329 -14.22212 -13.72944 -13.45569 -13.32248 -12.93317 -12.76216 -12.47804 -12.32139 -12.14179 -11.59533 -11.17462 -11.00057 -9.94075 -9.91239 -9.30222 -8.67732 -8.48268 -6.42173 0.30391 0.70696 1.09571 1.36580 1.41262 1.49558 1.64296 1.73300 2.22105 2.33755 3.41898 3.61753 3.95707 3.97258 4.34801 4.37766 4.40727 4.78734 4.85339 4.90309 5.00541 5.09748 5.30270 5.48716 6.13399 6.51424 6.84978 7.64009 8.40688 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.028444 B = 0.007524 C = 0.006219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.143355 B = 3720.451800 C = 4501.075198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.286 6.286 3 C -0.062 4.062 4 C -0.009 4.009 5 C 0.061 3.939 6 N -0.436 5.436 7 C 0.195 3.805 8 C -0.474 4.474 9 H 0.083 0.917 10 C 0.029 3.971 11 N -0.783 5.783 12 Si 0.990 3.010 13 H -0.260 1.260 14 H -0.265 1.265 15 H -0.260 1.260 16 C -0.487 4.487 17 S 0.022 5.978 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.120 0.880 21 H 0.090 0.910 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.281 0.719 26 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -6.978 -3.595 9.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.060 6.060 3 C -0.211 4.211 4 C -0.052 4.052 5 C -0.224 4.224 6 N -0.151 5.151 7 C 0.073 3.927 8 C -0.508 4.508 9 H 0.101 0.899 10 C -0.191 4.191 11 N -0.406 5.406 12 Si 0.810 3.190 13 H -0.184 1.184 14 H -0.190 1.190 15 H -0.184 1.184 16 C -0.626 4.626 17 S 0.270 5.730 18 H 0.097 0.903 19 H 0.107 0.893 20 H 0.139 0.861 21 H 0.109 0.891 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.125 0.875 25 H 0.092 0.908 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.326 -8.397 -3.933 10.693 hybrid contribution -0.406 2.531 1.237 2.846 sum -5.732 -5.866 -2.696 8.633 Atomic orbital electron populations 1.23460 0.91049 1.07784 1.05734 1.86713 1.10838 1.10312 1.98165 1.23173 0.98343 0.94568 1.05043 1.19805 0.94246 0.86316 1.04811 1.28352 1.03316 1.00757 0.89950 1.67389 1.13651 1.05303 1.28770 1.18436 0.93542 0.88576 0.92158 1.19310 1.44543 0.96354 0.90558 0.89915 1.26900 0.92214 0.97658 1.02311 1.70178 1.31605 1.17182 1.21682 0.85148 0.79891 0.78106 0.75851 1.18397 1.18960 1.18432 1.25366 1.37991 1.03219 0.95986 1.82196 1.73132 1.03183 1.14485 0.90276 0.89336 0.86116 0.89141 0.91352 0.89578 0.87526 0.90830 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 10.76 113.37 1.22 -0.84 15 2 S -0.29 -7.55 22.38 -56.49 -1.26 -8.81 15 3 C -0.06 -1.93 5.92 71.98 0.43 -1.50 15 4 C -0.01 -0.33 5.83 29.85 0.17 -0.16 15 5 C 0.06 2.79 6.82 88.55 0.60 3.40 15 6 N -0.44 -24.00 8.46 -180.34 -1.53 -25.52 15 7 C 0.20 11.24 6.47 39.45 0.26 11.50 15 8 C -0.47 -27.06 9.23 23.34 0.22 -26.85 15 9 H 0.08 4.51 7.84 -2.91 -0.02 4.49 15 10 C 0.03 1.51 5.49 85.17 0.47 1.98 15 11 N -0.78 -43.01 11.69 21.79 0.25 -42.76 15 12 Si 0.99 39.46 29.56 68.60 2.03 41.48 15 13 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 14 H -0.27 -9.93 7.11 99.48 0.71 -9.23 15 15 H -0.26 -10.06 7.11 99.48 0.71 -9.35 15 16 C -0.49 -25.54 10.98 67.69 0.74 -24.79 15 17 S 0.02 0.93 23.16 -56.49 -1.31 -0.38 15 18 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 19 H 0.09 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.12 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 23 H 0.09 3.21 8.14 -2.39 -0.02 3.19 15 24 H 0.11 3.21 8.14 -2.39 -0.02 3.19 15 25 H 0.28 14.01 8.30 -92.71 -0.77 13.24 15 26 H 0.14 6.92 8.06 -2.91 -0.02 6.90 15 Total: -1.00 -64.02 259.27 3.46 -60.56 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.17 Total: 12.69 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 4.11 Total: -37.27 kcal Atomic # 7 Polarization: -67.01 SS G_CDS: -1.27 Total: -68.28 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: -6.62 SS G_CDS: -2.57 Total: -9.19 kcal Total: -64.02 3.46 -60.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000696076777.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.859 kcal (2) G-P(sol) polarization free energy of solvation -64.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds