Wall clock time and date at job start Mon Mar 30 2020 03:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.46876 * 125.66972 * 179.97438 * 13 11 10 15 15 C 1.53820 * 107.21232 * 180.71129 * 14 13 11 16 16 C 1.51962 * 104.63879 * 17.08844 * 15 14 13 17 17 O 1.20761 * 127.92921 * 152.35938 * 16 15 14 18 18 C 1.46853 * 125.67008 * 359.69452 * 13 11 10 19 19 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 21 21 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 22 22 H 1.09001 * 109.89694 * 300.11027 * 14 13 11 23 23 H 1.08997 * 109.89171 * 61.14833 * 14 13 11 24 24 H 1.08998 * 110.40588 * 135.87419 * 15 14 13 25 25 H 1.08995 * 110.40325 * 258.18298 * 15 14 13 26 26 H 1.08999 * 110.00580 * 280.84210 * 18 13 11 27 27 H 1.09004 * 110.00644 * 42.19578 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 2.4677 -7.7626 -0.0143 15 6 3.7711 -8.5793 -0.0037 16 6 4.8396 -7.5917 0.4345 17 8 5.8737 -7.8249 1.0130 18 6 4.3095 -6.2456 -0.0264 19 1 -0.4851 0.8400 -0.0004 20 1 3.1212 -3.7293 -0.8992 21 1 3.1279 -3.7332 0.8807 22 1 1.8799 -7.9909 0.8748 23 1 1.8902 -7.9928 -0.9096 24 1 3.6988 -9.4015 0.7082 25 1 3.9892 -8.9598 -1.0016 26 1 4.6602 -6.0300 -1.0357 27 1 4.6372 -5.4627 0.6577 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701246301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:13 Heat of formation + Delta-G solvation = -65.705584 kcal Electronic energy + Delta-G solvation = -13286.735094 eV Core-core repulsion = 10750.258789 eV Total energy + Delta-G solvation = -2536.476306 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.43938 -38.83312 -36.40724 -32.46100 -31.69882 -28.87014 -28.55836 -25.53107 -23.46432 -20.36283 -19.69196 -17.80942 -16.97538 -16.71431 -15.65928 -15.15237 -14.83903 -14.78263 -14.70275 -13.87285 -13.77967 -13.07447 -12.99019 -12.57377 -12.20178 -12.10968 -11.59498 -11.07972 -11.05670 -10.79932 -10.08444 -9.85766 -9.57720 -9.08842 -8.71766 -8.29580 -6.55069 -6.24568 -3.96190 1.42441 2.71914 2.90902 3.21974 3.22341 3.27351 3.48913 3.72194 4.13536 4.17627 4.33535 4.69533 4.92488 5.08380 5.11287 5.24902 5.35445 5.49220 5.58688 5.63251 5.81919 6.05610 6.17692 6.97486 7.41949 7.56529 8.31910 8.38094 9.20642 10.82790 Molecular weight = 229.06amu Principal moments of inertia in cm(-1) A = 0.047795 B = 0.005768 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.689869 B = 4853.110836 C = 5378.879050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.150 4.150 11 C 0.553 3.447 12 O -0.506 6.506 13 N -0.623 5.623 14 C 0.112 3.888 15 C -0.191 4.191 16 C 0.374 3.626 17 O -0.426 6.426 18 C 0.045 3.955 19 H 0.269 0.731 20 H 0.092 0.908 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -13.905 -1.296 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.300 4.300 11 C 0.342 3.658 12 O -0.379 6.379 13 N -0.363 5.363 14 C -0.011 4.011 15 C -0.229 4.229 16 C 0.247 3.753 17 O -0.296 6.296 18 C -0.080 4.080 19 H 0.079 0.921 20 H 0.110 0.890 21 H 0.109 0.891 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.133 0.867 26 H 0.124 0.876 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.183 -14.142 -0.970 15.892 hybrid contribution 1.941 1.260 -0.102 2.317 sum 9.125 -12.882 -1.072 15.823 Atomic orbital electron populations 1.70001 1.05964 1.27652 1.46627 1.24990 0.95035 0.99043 0.94438 0.86214 0.79237 0.81164 0.78837 1.19909 1.20787 1.19903 1.22815 0.94892 0.91537 1.59288 0.90893 1.85409 1.04684 0.96369 1.96744 1.23552 1.06757 0.94667 1.05057 1.20054 0.85521 0.85247 0.74965 1.90731 1.14657 1.84890 1.47611 1.48128 1.05362 1.06090 1.76692 1.21717 0.95648 0.80167 1.03545 1.23040 0.95055 0.99750 1.05088 1.24789 0.84883 0.92285 0.73390 1.90481 1.23535 1.84846 1.30728 1.22334 0.82652 0.98829 1.04176 0.92068 0.88990 0.89062 0.90612 0.90247 0.87577 0.86656 0.87576 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.89 13.22 55.49 0.73 -25.16 15 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 15 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 15 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.54 -15.09 9.50 30.94 0.29 -14.79 15 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 15 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 15 10 C -0.15 -2.95 5.21 36.00 0.19 -2.76 15 11 C 0.55 10.13 7.86 -10.99 -0.09 10.05 15 12 O -0.51 -11.23 16.19 5.56 0.09 -11.14 15 13 N -0.62 -8.26 3.33 -173.30 -0.58 -8.84 15 14 C 0.11 1.14 6.91 -3.41 -0.02 1.11 15 15 C -0.19 -1.36 6.80 -26.83 -0.18 -1.54 15 16 C 0.37 3.61 8.10 -27.85 -0.23 3.39 15 17 O -0.43 -5.37 17.99 6.00 0.11 -5.26 15 18 C 0.04 0.45 6.50 -4.44 -0.03 0.43 15 19 H 0.27 7.49 8.31 -40.82 -0.34 7.15 15 20 H 0.09 1.65 8.14 -51.92 -0.42 1.23 15 21 H 0.09 1.67 7.90 -51.92 -0.41 1.26 15 22 H 0.08 0.80 8.14 -51.93 -0.42 0.37 15 23 H 0.08 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.11 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.12 0.58 8.14 -51.93 -0.42 0.15 15 26 H 0.11 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.10 1.06 7.65 -51.93 -0.40 0.66 15 LS Contribution 259.07 15.07 3.90 3.90 Total: -1.00 -34.37 259.07 -6.03 -40.39 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -2.89 Total: -4.16 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -0.16 Total: -2.12 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.16 Total: -34.00 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: 0.20 Total: -16.40 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.37 -6.03 -40.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701246301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.315 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds