Wall clock time and date at job start Mon Mar 30 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 O 1.42902 * 110.99037 * 277.56168 * 5 4 3 7 7 C 1.52996 * 110.99254 * 153.74565 * 5 4 3 8 8 N 1.46904 * 109.46931 * 185.00159 * 7 5 4 9 9 C 1.46909 * 110.99704 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46619 * 179.97438 * 9 8 7 11 11 C 1.50711 * 109.46677 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99700 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99541 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00392 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99623 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46900 * 90.00186 * 15 13 11 17 17 H 1.48497 * 109.47249 * 210.00121 * 15 13 11 18 18 H 1.48501 * 109.47184 * 330.00332 * 15 13 11 19 19 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 20 20 H 1.09002 * 109.46689 * 59.87970 * 1 2 3 21 21 H 1.09005 * 109.46763 * 179.87410 * 1 2 3 22 22 H 1.08994 * 109.47039 * 299.87765 * 1 2 3 23 23 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 24 24 H 1.09000 * 109.88994 * 356.14383 * 3 2 1 25 25 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 26 26 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 27 27 H 0.96704 * 113.99742 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46895 * 304.99614 * 7 5 4 29 29 H 1.08995 * 109.47741 * 65.00077 * 7 5 4 30 30 H 1.00903 * 111.00339 * 56.04921 * 8 7 5 31 31 H 1.08991 * 109.47216 * 299.99925 * 9 8 7 32 32 H 1.08995 * 109.46951 * 60.00135 * 9 8 7 33 33 H 1.08991 * 109.47456 * 300.00012 * 10 9 8 34 34 H 1.09000 * 109.47085 * 60.00948 * 10 9 8 35 35 H 0.96997 * 120.00127 * 180.02562 * 14 13 11 36 36 H 1.09004 * 110.37187 * 265.19138 * 19 2 1 37 37 H 1.09002 * 110.37256 * 27.42242 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 8 4.3870 -0.3851 -0.7152 7 6 3.6485 -0.1297 -3.0244 8 7 3.8945 -1.5503 -3.3062 9 6 4.2276 -1.7561 -4.7221 10 6 4.4770 -3.2441 -4.9762 11 6 4.8182 -3.4553 -6.4289 12 1 4.8539 -2.6125 -7.1032 13 6 5.0857 -4.7243 -6.8967 14 7 5.0426 -5.7506 -6.0754 15 14 5.5092 -4.9861 -8.6972 16 1 6.9788 -4.8775 -8.8808 17 1 5.0556 -6.3349 -9.1214 18 1 4.8299 -3.9537 -9.5206 19 6 1.9989 -0.7077 -1.1850 20 1 -0.3633 0.5157 -0.8889 21 1 -0.3633 -1.0277 -0.0023 22 1 -0.3633 0.5119 0.8910 23 1 2.5697 1.5541 0.9105 24 1 1.1755 2.0891 -0.0689 25 1 2.3744 1.9545 -2.0695 26 1 3.8001 2.1034 -0.9905 27 1 4.6652 -1.2977 -0.8733 28 1 2.8168 0.2230 -3.6343 29 1 4.5424 0.4476 -3.2603 30 1 3.1033 -2.1150 -3.0355 31 1 3.3997 -1.4148 -5.3435 32 1 5.1254 -1.1900 -4.9701 33 1 5.3051 -3.5850 -4.3549 34 1 3.5794 -3.8105 -4.7282 35 1 5.2312 -6.6434 -6.4045 36 1 2.2149 -1.7478 -0.9407 37 1 1.2882 -0.6520 -2.0095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702653463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:51 Heat of formation + Delta-G solvation = -52.902190 kcal Electronic energy + Delta-G solvation = -16112.336650 eV Core-core repulsion = 13503.047521 eV Total energy + Delta-G solvation = -2609.289129 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.72702 -36.35073 -35.06123 -32.94343 -31.51376 -29.93790 -28.23205 -26.39503 -24.52587 -23.02380 -21.20149 -20.55001 -20.16516 -17.03853 -16.33348 -15.89483 -15.42802 -15.15136 -14.52396 -14.20010 -14.15039 -13.62202 -13.46172 -13.03448 -12.65301 -12.23213 -12.20181 -12.00492 -11.80540 -11.52236 -11.14093 -11.07277 -10.95893 -10.82383 -10.47702 -10.05718 -9.79204 -9.37267 -9.17804 -8.43973 -8.38367 -7.98221 -6.02511 -4.05421 3.30585 3.36774 3.39602 3.85474 4.18931 4.35902 4.49698 4.53218 4.69708 4.96486 5.18246 5.22970 5.26309 5.33639 5.37001 5.49300 5.59017 5.67779 5.69114 5.71660 5.91020 6.04949 6.06451 6.26539 6.32995 6.79276 6.90928 6.92069 7.33926 7.65637 7.73446 7.85722 7.93405 8.02868 8.39391 9.01581 9.58685 11.08881 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.052862 B = 0.004481 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.552380 B = 6247.040410 C = 6385.851954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.047 3.953 4 C -0.131 4.131 5 C 0.132 3.868 6 O -0.544 6.544 7 C 0.038 3.962 8 N -0.692 5.692 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.523 4.523 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.015 3.985 20 H 0.025 0.975 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.388 0.612 28 H 0.031 0.969 29 H 0.079 0.921 30 H 0.335 0.665 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.026 0.974 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 12.851 10.154 18.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.090 3.910 6 O -0.351 6.351 7 C -0.092 4.092 8 N -0.323 5.323 9 C -0.061 4.061 10 C -0.012 4.012 11 C -0.562 4.562 12 H 0.072 0.928 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.113 4.113 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.238 0.762 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.811 13.030 11.044 18.389 hybrid contribution -0.966 -0.286 -2.449 2.648 sum -7.777 12.744 8.595 17.227 Atomic orbital electron populations 1.22570 0.87928 1.02137 1.00363 1.63515 1.07486 1.14134 1.40092 1.22797 0.97415 0.89226 0.98679 1.22788 1.00352 0.95502 0.98320 1.22135 0.86189 0.93432 0.89286 1.86374 1.51229 1.35461 1.62044 1.22523 1.00563 0.92041 0.94122 1.60573 1.43533 1.05005 1.23180 1.22171 0.98404 1.01464 0.84086 1.19074 0.97449 0.88188 0.96516 1.21161 1.47510 0.93002 0.94540 0.92777 1.24996 0.95452 0.96130 0.97709 1.69966 1.49289 0.99126 1.34802 0.86584 0.78712 0.77430 0.85203 1.20585 1.21192 1.19946 1.23772 0.96273 0.99878 0.91397 0.95673 0.91310 0.91450 0.90197 0.92903 0.90373 0.89600 0.76188 0.95086 0.90261 0.84764 0.96582 0.92183 0.95534 0.96826 0.92940 0.89298 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.12 60.07 0.55 0.73 16 2 N -0.53 -6.32 5.44 -239.52 -1.30 -7.62 16 3 C 0.05 0.50 6.90 -2.84 -0.02 0.48 16 4 C -0.13 -1.44 6.15 -24.91 -0.15 -1.59 16 5 C 0.13 1.70 1.07 -88.48 -0.10 1.60 16 6 O -0.54 -7.86 13.20 -35.23 -0.47 -8.33 16 7 C 0.04 0.54 4.96 -3.82 -0.02 0.52 16 8 N -0.69 -11.66 5.99 -113.78 -0.68 -12.34 16 9 C 0.07 1.37 5.62 -3.82 -0.02 1.35 16 10 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 12 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.76 13.29 55.43 0.74 -26.02 16 15 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 C 0.01 0.18 5.02 -2.30 -0.01 0.17 16 20 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.48 7.58 -51.93 -0.39 0.09 16 25 H 0.08 0.76 8.03 -51.93 -0.42 0.35 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.39 5.27 8.59 45.56 0.39 5.66 16 28 H 0.03 0.42 8.13 -51.93 -0.42 0.00 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.33 5.44 7.73 -39.29 -0.30 5.13 16 31 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 1.15 8.02 -51.93 -0.42 0.73 16 37 H 0.05 0.62 7.68 -51.93 -0.40 0.22 16 LS Contribution 300.60 15.07 4.53 4.53 Total: -1.00 -30.33 300.60 -8.26 -38.59 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.73 Total: 4.38 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -0.33 Total: -9.74 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.25 Total: -45.98 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.47 Total: -8.33 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.33 -8.26 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702653463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.311 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds