Wall clock time and date at job start Mon Mar 30 2020 02:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47440 * 110.99676 * 2 1 4 4 C 1.54317 * 107.23368 * 236.73977 * 3 2 1 5 5 C 1.55144 * 103.01861 * 337.71644 * 4 3 2 6 6 O 1.42902 * 110.99037 * 277.56168 * 5 4 3 7 7 C 1.52996 * 110.99254 * 153.74565 * 5 4 3 8 8 N 1.46904 * 109.46931 * 185.00159 * 7 5 4 9 9 C 1.46909 * 110.99704 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46619 * 179.97438 * 9 8 7 11 11 C 1.50711 * 109.46677 * 179.97438 * 10 9 8 12 12 H 1.07992 * 119.99700 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99541 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00392 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99623 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46900 * 90.00186 * 15 13 11 17 17 H 1.48497 * 109.47249 * 210.00121 * 15 13 11 18 18 H 1.48501 * 109.47184 * 330.00332 * 15 13 11 19 19 C 1.47842 * 111.00238 * 239.15389 * 2 1 3 20 20 H 1.09002 * 109.46689 * 59.87970 * 1 2 3 21 21 H 1.09005 * 109.46763 * 179.87410 * 1 2 3 22 22 H 1.08994 * 109.47039 * 299.87765 * 1 2 3 23 23 H 1.09000 * 109.89463 * 117.33566 * 3 2 1 24 24 H 1.09000 * 109.88994 * 356.14383 * 3 2 1 25 25 H 1.08999 * 110.70846 * 96.09223 * 4 3 2 26 26 H 1.09000 * 110.71111 * 219.33808 * 4 3 2 27 27 H 0.96704 * 113.99742 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.46895 * 304.99614 * 7 5 4 29 29 H 1.08995 * 109.47741 * 65.00077 * 7 5 4 30 30 H 1.00903 * 111.00339 * 56.04921 * 8 7 5 31 31 H 1.08991 * 109.47216 * 299.99925 * 9 8 7 32 32 H 1.08995 * 109.46951 * 60.00135 * 9 8 7 33 33 H 1.08991 * 109.47456 * 300.00012 * 10 9 8 34 34 H 1.09000 * 109.47085 * 60.00948 * 10 9 8 35 35 H 0.96997 * 120.00127 * 180.02562 * 14 13 11 36 36 H 1.09004 * 110.37187 * 265.19138 * 19 2 1 37 37 H 1.09002 * 110.37256 * 27.42242 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9973 1.3765 0.0000 4 6 2.9158 1.5137 -1.2324 5 6 3.3048 0.0444 -1.5437 6 8 4.3870 -0.3851 -0.7152 7 6 3.6485 -0.1297 -3.0244 8 7 3.8945 -1.5503 -3.3062 9 6 4.2276 -1.7561 -4.7221 10 6 4.4770 -3.2441 -4.9762 11 6 4.8182 -3.4553 -6.4289 12 1 4.8539 -2.6125 -7.1032 13 6 5.0857 -4.7243 -6.8967 14 7 5.0426 -5.7506 -6.0754 15 14 5.5092 -4.9861 -8.6972 16 1 6.9788 -4.8775 -8.8808 17 1 5.0556 -6.3349 -9.1214 18 1 4.8299 -3.9537 -9.5206 19 6 1.9989 -0.7077 -1.1850 20 1 -0.3633 0.5157 -0.8889 21 1 -0.3633 -1.0277 -0.0023 22 1 -0.3633 0.5119 0.8910 23 1 2.5697 1.5541 0.9105 24 1 1.1755 2.0891 -0.0689 25 1 2.3744 1.9545 -2.0695 26 1 3.8001 2.1034 -0.9905 27 1 4.6652 -1.2977 -0.8733 28 1 2.8168 0.2230 -3.6343 29 1 4.5424 0.4476 -3.2603 30 1 3.1033 -2.1150 -3.0355 31 1 3.3997 -1.4148 -5.3435 32 1 5.1254 -1.1900 -4.9701 33 1 5.3051 -3.5850 -4.3549 34 1 3.5794 -3.8105 -4.7282 35 1 5.2312 -6.6434 -6.4045 36 1 2.2149 -1.7478 -0.9407 37 1 1.2882 -0.6520 -2.0095 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702653463.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:50 Heat of formation + Delta-G solvation = -77.607978 kcal Electronic energy + Delta-G solvation = -16113.407973 eV Core-core repulsion = 13503.047521 eV Total energy + Delta-G solvation = -2610.360452 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.71077 -37.59713 -36.40514 -34.91268 -32.64041 -31.43352 -29.46881 -27.54657 -26.07608 -24.35925 -22.63474 -21.80774 -21.25193 -18.52407 -18.10414 -16.94198 -16.59870 -16.45537 -16.21802 -15.54116 -15.18775 -14.87713 -14.43242 -14.40156 -14.13738 -13.82361 -13.42044 -13.02484 -12.95173 -12.84881 -12.67821 -12.53160 -12.40753 -12.03377 -11.92806 -11.80163 -11.38274 -11.19690 -10.78064 -10.56733 -9.39621 -9.29914 -8.20754 -6.32215 1.40768 1.42062 1.52861 2.40184 2.96152 3.13057 3.20338 3.21385 3.61872 3.68918 3.97201 4.24953 4.31875 4.40626 4.47150 4.52610 4.55576 4.64826 4.65357 4.75302 4.79699 4.87379 4.97784 5.04731 5.07708 5.20078 5.43273 5.65508 5.75942 5.92258 6.06095 6.11070 6.22158 6.44904 6.84440 6.84986 7.37292 8.91280 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.052862 B = 0.004481 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.552380 B = 6247.040410 C = 6385.851954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.546 5.546 3 C 0.047 3.953 4 C -0.128 4.128 5 C 0.130 3.870 6 O -0.557 6.557 7 C 0.044 3.956 8 N -0.693 5.693 9 C 0.085 3.915 10 C 0.031 3.969 11 C -0.546 4.546 12 H 0.060 0.940 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.018 3.982 20 H 0.032 0.968 21 H 0.067 0.933 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.389 0.611 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.339 0.661 31 H 0.021 0.979 32 H 0.058 0.942 33 H -0.004 1.004 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 14.222 9.488 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.081 4.081 4 C -0.166 4.166 5 C 0.088 3.912 6 O -0.364 6.364 7 C -0.086 4.086 8 N -0.324 5.324 9 C -0.044 4.044 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.196 4.196 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.110 4.110 20 H 0.051 0.949 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.105 0.895 27 H 0.238 0.762 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.157 0.843 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.015 0.985 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.471 14.425 10.392 19.285 hybrid contribution -0.783 -0.709 -2.169 2.413 sum -8.254 13.716 8.223 17.997 Atomic orbital electron populations 1.22617 0.86593 1.02460 1.01337 1.63475 1.08890 1.14886 1.39824 1.22815 0.97956 0.89092 0.98209 1.22829 1.00678 0.93993 0.99110 1.22229 0.85957 0.94967 0.88043 1.86368 1.51923 1.35594 1.62536 1.22530 1.00861 0.89872 0.95371 1.60432 1.44230 1.07096 1.20689 1.21773 0.98566 0.97662 0.86366 1.18925 0.95170 0.91399 0.95129 1.21613 1.47532 0.93483 0.95817 0.92189 1.25950 0.95148 0.95822 1.02681 1.70098 1.50174 0.99673 1.37137 0.85439 0.78688 0.77611 0.79247 1.19820 1.20713 1.18723 1.23680 0.96121 0.99333 0.91878 0.94919 0.91412 0.90172 0.90841 0.90845 0.88713 0.89483 0.76157 0.93814 0.90640 0.84305 0.96110 0.92355 0.98525 0.98908 0.92727 0.90467 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.12 127.69 1.16 1.48 16 2 N -0.55 -12.17 5.44 -911.69 -4.96 -17.13 16 3 C 0.05 0.90 6.90 86.65 0.60 1.50 16 4 C -0.13 -2.53 6.15 31.78 0.20 -2.33 16 5 C 0.13 3.18 1.07 -9.41 -0.01 3.17 16 6 O -0.56 -15.79 13.20 -148.98 -1.97 -17.76 16 7 C 0.04 1.18 4.96 86.30 0.43 1.60 16 8 N -0.69 -23.09 5.99 -513.89 -3.08 -26.17 16 9 C 0.09 3.48 5.62 86.30 0.49 3.96 16 10 C 0.03 1.64 5.23 29.85 0.16 1.80 16 11 C -0.55 -30.95 9.11 25.60 0.23 -30.72 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 0.12 5.46 84.65 0.46 0.58 16 14 N -0.93 -56.56 13.29 21.45 0.28 -56.28 16 15 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 C 0.02 0.43 5.02 86.77 0.44 0.86 16 20 H 0.03 0.52 8.11 -2.39 -0.02 0.50 16 21 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.11 7.58 -2.39 -0.02 1.10 16 25 H 0.09 1.57 8.03 -2.39 -0.02 1.55 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.39 10.61 8.59 -74.05 -0.64 9.97 16 28 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.34 10.96 7.73 -89.69 -0.69 10.26 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 36 H 0.08 1.98 8.02 -2.38 -0.02 1.96 16 37 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 Total: -1.00 -64.18 300.60 -3.84 -68.02 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.29 Total: 21.40 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.15 Total: -18.09 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -7.76 Total: -99.58 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -1.97 Total: -17.76 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.18 -3.84 -68.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702653463.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.585 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds