Wall clock time and date at job start Mon Mar 30 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99688 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99984 * 3 2 1 7 7 C 1.38651 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.35780 * 116.99784 * 179.97438 * 9 7 2 11 11 C 1.39037 * 120.07030 * 269.72697 * 10 9 7 12 12 F 1.35099 * 120.06383 * 359.97438 * 11 10 9 13 13 C 1.38481 * 119.87068 * 179.76898 * 11 10 9 14 14 F 1.35099 * 119.99811 * 180.21250 * 13 11 10 15 15 C 1.38515 * 119.99654 * 0.46408 * 13 11 10 16 16 C 1.38255 * 120.12954 * 359.78937 * 15 13 11 17 17 C 1.38154 * 120.13632 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00089 * 179.97438 * 17 16 15 19 19 N 1.46903 * 109.47031 * 259.98009 * 18 17 16 20 20 H 0.97000 * 120.00630 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.93271 * 179.77024 * 15 13 11 22 22 H 1.08001 * 119.93301 * 179.97438 * 16 15 13 23 23 H 1.08993 * 109.47311 * 19.98385 * 18 17 16 24 24 H 1.09003 * 109.47188 * 139.98435 * 18 17 16 25 25 H 1.00893 * 111.00172 * 56.05311 * 19 18 17 26 26 H 1.00906 * 110.99895 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0743 -3.5071 0.0005 11 6 2.4489 -4.0944 -1.2027 12 9 2.0774 -3.5336 -2.3742 13 6 3.2073 -5.2531 -1.1979 14 9 3.5764 -5.8237 -2.3656 15 6 3.5829 -5.8300 0.0041 16 6 3.2059 -5.2488 1.2006 17 6 2.4535 -4.0901 1.2021 18 6 2.0437 -3.4595 2.5080 19 7 0.6530 -3.8222 2.8119 20 1 -0.4851 0.8400 -0.0004 21 1 4.1712 -6.7357 0.0067 22 1 3.5002 -5.7014 2.1359 23 1 2.6952 -3.8181 3.3049 24 1 2.1277 -2.3755 2.4302 25 1 0.5354 -4.8242 2.8256 26 1 0.3544 -3.4115 3.6838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703528864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:16 Heat of formation + Delta-G solvation = -88.565263 kcal Electronic energy + Delta-G solvation = -15851.065388 eV Core-core repulsion = 12759.757426 eV Total energy + Delta-G solvation = -3091.307962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.87514 -47.83382 -39.11765 -36.29226 -34.11731 -31.98205 -29.67865 -29.14916 -25.12883 -24.22272 -22.24694 -20.98362 -18.24324 -17.24278 -16.90259 -16.55112 -15.69324 -15.55251 -15.17401 -14.35650 -14.19414 -14.12905 -13.81656 -13.41225 -13.21189 -12.94688 -12.23070 -11.65685 -11.46251 -11.23202 -11.18733 -10.90325 -10.41542 -10.17240 -9.74035 -8.26604 -8.24977 -8.09465 -7.97316 -6.09617 -3.81669 1.36949 1.54497 3.24249 3.27348 3.30007 3.75570 4.18279 4.31621 4.83385 5.03786 5.13532 5.18320 5.31080 5.32537 5.47615 5.75361 6.15352 6.22022 6.36016 6.48429 6.56127 6.90298 7.24669 7.36432 7.60447 7.90015 8.24190 9.30894 9.96602 11.08482 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.010393 C = 0.008336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.795774 B = 2693.419829 C = 3357.977027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.037 3.963 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.377 4.377 8 H 0.069 0.931 9 O -0.211 6.211 10 C 0.164 3.836 11 C 0.029 3.971 12 F -0.122 7.122 13 C 0.069 3.931 14 F -0.138 7.138 15 C -0.161 4.161 16 C -0.091 4.091 17 C -0.106 4.106 18 C 0.116 3.884 19 N -0.830 5.830 20 H 0.263 0.737 21 H 0.136 0.864 22 H 0.130 0.870 23 H 0.024 0.976 24 H 0.099 0.901 25 H 0.331 0.669 26 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 -8.792 4.694 11.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.164 4.164 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.453 4.453 8 H 0.087 0.913 9 O -0.123 6.123 10 C 0.116 3.884 11 C 0.008 3.992 12 F -0.100 7.100 13 C 0.048 3.952 14 F -0.117 7.117 15 C -0.180 4.180 16 C -0.110 4.110 17 C -0.107 4.107 18 C -0.014 4.014 19 N -0.359 5.359 20 H 0.073 0.927 21 H 0.154 0.846 22 H 0.148 0.852 23 H 0.042 0.958 24 H 0.117 0.883 25 H 0.142 0.858 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.786 -8.224 3.938 10.799 hybrid contribution 0.998 0.224 0.255 1.054 sum 6.784 -8.000 4.192 11.296 Atomic orbital electron populations 1.70034 1.05402 1.26589 1.49045 1.25000 0.95743 0.97729 0.97919 0.85971 0.78611 0.81098 0.78701 1.20039 1.20575 1.20049 1.20791 0.90106 0.80539 1.53845 0.91338 1.83977 1.27870 1.08918 1.91525 1.18830 0.89254 0.91423 0.88904 1.18603 1.02303 0.94831 0.83459 1.91496 1.89591 1.84466 1.44478 1.17631 1.01471 0.93803 0.82285 1.91464 1.89980 1.83934 1.46281 1.20743 1.04869 1.02129 0.90286 1.20737 0.98094 0.94852 0.97308 1.20286 0.98639 0.96254 0.95561 1.20496 0.88091 1.02126 0.90691 1.58448 1.21903 1.14861 1.40690 0.92701 0.84593 0.85178 0.95811 0.88255 0.85771 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.55 13.67 55.48 0.76 -25.79 15 2 C 0.04 1.06 5.49 -17.52 -0.10 0.97 15 3 Si 0.93 21.47 29.55 -169.99 -5.02 16.44 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 7 C -0.38 -10.72 9.07 30.88 0.28 -10.44 15 8 H 0.07 1.86 7.76 -52.49 -0.41 1.45 15 9 O -0.21 -5.99 8.91 -0.03 0.00 -5.99 15 10 C 0.16 3.84 5.57 -39.07 -0.22 3.62 15 11 C 0.03 0.65 7.32 -39.20 -0.29 0.36 15 12 F -0.12 -3.00 17.03 2.25 0.04 -2.96 15 13 C 0.07 1.28 7.30 -39.39 -0.29 0.99 15 14 F -0.14 -2.52 17.18 2.25 0.04 -2.48 15 15 C -0.16 -2.43 10.02 -39.47 -0.40 -2.83 15 16 C -0.09 -1.36 9.66 -39.61 -0.38 -1.74 15 17 C -0.11 -2.00 5.41 -104.43 -0.56 -2.56 15 18 C 0.12 2.03 6.58 -4.98 -0.03 1.99 15 19 N -0.83 -13.91 9.61 -11.41 -0.11 -14.01 15 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 21 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 22 H 0.13 1.45 8.03 -52.49 -0.42 1.03 15 23 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 15 24 H 0.10 2.07 7.19 -51.93 -0.37 1.70 15 25 H 0.33 4.70 8.98 -39.30 -0.35 4.34 15 26 H 0.34 4.87 9.08 -39.29 -0.36 4.51 15 LS Contribution 249.11 15.07 3.75 3.75 Total: -1.00 -32.49 249.11 -4.41 -36.91 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -1.88 Total: 3.77 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.98 Total: -9.64 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.65 Total: -39.81 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: 0.00 Total: -5.99 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.08 Total: -5.44 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.49 -4.41 -36.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703528864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.659 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds