Wall clock time and date at job start Mon Mar 30 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86800 * 119.99841 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99688 * 3 2 1 5 5 H 1.48494 * 109.47288 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99984 * 3 2 1 7 7 C 1.38651 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00166 * 179.97438 * 7 2 1 9 9 O 1.34824 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.35780 * 116.99784 * 179.97438 * 9 7 2 11 11 C 1.39037 * 120.07030 * 269.72697 * 10 9 7 12 12 F 1.35099 * 120.06383 * 359.97438 * 11 10 9 13 13 C 1.38481 * 119.87068 * 179.76898 * 11 10 9 14 14 F 1.35099 * 119.99811 * 180.21250 * 13 11 10 15 15 C 1.38515 * 119.99654 * 0.46408 * 13 11 10 16 16 C 1.38255 * 120.12954 * 359.78937 * 15 13 11 17 17 C 1.38154 * 120.13632 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00089 * 179.97438 * 17 16 15 19 19 N 1.46903 * 109.47031 * 259.98009 * 18 17 16 20 20 H 0.97000 * 120.00630 * 0.02562 * 1 2 3 21 21 H 1.07999 * 119.93271 * 179.77024 * 15 13 11 22 22 H 1.08001 * 119.93301 * 179.97438 * 16 15 13 23 23 H 1.08993 * 109.47311 * 19.98385 * 18 17 16 24 24 H 1.09003 * 109.47188 * 139.98435 * 18 17 16 25 25 H 1.00893 * 111.00172 * 56.05311 * 19 18 17 26 26 H 1.00906 * 110.99895 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3683 0.0005 10 6 2.0743 -3.5071 0.0005 11 6 2.4489 -4.0944 -1.2027 12 9 2.0774 -3.5336 -2.3742 13 6 3.2073 -5.2531 -1.1979 14 9 3.5764 -5.8237 -2.3656 15 6 3.5829 -5.8300 0.0041 16 6 3.2059 -5.2488 1.2006 17 6 2.4535 -4.0901 1.2021 18 6 2.0437 -3.4595 2.5080 19 7 0.6530 -3.8222 2.8119 20 1 -0.4851 0.8400 -0.0004 21 1 4.1712 -6.7357 0.0067 22 1 3.5002 -5.7014 2.1359 23 1 2.6952 -3.8181 3.3049 24 1 2.1277 -2.3755 2.4302 25 1 0.5354 -4.8242 2.8256 26 1 0.3544 -3.4115 3.6838 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703528864.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:16 Heat of formation + Delta-G solvation = -113.110133 kcal Electronic energy + Delta-G solvation = -15852.129734 eV Core-core repulsion = 12759.757426 eV Total energy + Delta-G solvation = -3092.372308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 229.065 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.43219 -49.50386 -40.70144 -38.06452 -35.48024 -34.08020 -31.12074 -30.68927 -27.13284 -25.73184 -23.78828 -22.44579 -20.15524 -18.95146 -18.54049 -18.12383 -17.29322 -17.20553 -16.67622 -16.00390 -15.96323 -15.55982 -15.28398 -15.07782 -14.71973 -14.63272 -13.76337 -13.58172 -12.98287 -12.89694 -12.70424 -12.48813 -12.18003 -11.94572 -11.67398 -10.36909 -9.70314 -9.55538 -9.36758 -8.23634 -6.00327 -0.08936 0.07314 1.36859 1.44689 1.51772 2.20436 2.43527 2.78319 3.10141 3.39962 3.66629 3.70862 3.81182 4.02219 4.21665 4.47664 4.70024 4.84712 4.96541 5.07301 5.09394 5.13029 5.47673 5.80879 6.11270 6.39968 6.79010 7.16197 7.98331 8.98530 Molecular weight = 229.07amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.010393 C = 0.008336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.795774 B = 2693.419829 C = 3357.977027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.005 2.995 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.380 4.380 8 H 0.070 0.930 9 O -0.252 6.252 10 C 0.112 3.888 11 C -0.014 4.014 12 F -0.151 7.151 13 C 0.066 3.934 14 F -0.137 7.137 15 C -0.130 4.130 16 C -0.063 4.063 17 C -0.108 4.108 18 C 0.119 3.881 19 N -0.853 5.853 20 H 0.264 0.736 21 H 0.189 0.811 22 H 0.189 0.811 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.347 0.653 26 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -10.604 6.507 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.221 4.221 3 Si 0.826 3.174 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.457 4.457 8 H 0.087 0.913 9 O -0.164 6.164 10 C 0.065 3.935 11 C -0.034 4.034 12 F -0.129 7.129 13 C 0.046 3.954 14 F -0.116 7.116 15 C -0.149 4.149 16 C -0.082 4.082 17 C -0.110 4.110 18 C -0.010 4.010 19 N -0.385 5.385 20 H 0.073 0.927 21 H 0.206 0.794 22 H 0.206 0.794 23 H 0.091 0.909 24 H 0.073 0.927 25 H 0.160 0.840 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.161 -10.077 5.760 14.189 hybrid contribution 0.333 0.569 -0.275 0.715 sum 8.494 -9.507 5.485 13.879 Atomic orbital electron populations 1.70201 1.07503 1.27655 1.51332 1.26209 0.96734 1.01698 0.97487 0.84855 0.77394 0.75741 0.79449 1.19464 1.19961 1.17957 1.21154 0.90291 0.81616 1.52591 0.91258 1.83938 1.30223 1.10190 1.92091 1.19316 0.92247 0.90952 0.90971 1.19018 1.04944 0.97012 0.82442 1.91400 1.90308 1.85313 1.45920 1.17837 1.01004 0.92860 0.83718 1.91465 1.89823 1.83614 1.46685 1.21368 1.02620 1.02517 0.88356 1.21311 0.94842 0.92381 0.99631 1.20545 0.98724 0.97447 0.94242 1.20407 0.89452 0.99632 0.91553 1.58323 1.22050 1.16310 1.41845 0.92694 0.79419 0.79402 0.90948 0.92704 0.83985 0.83452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.96 13.67 21.61 0.30 -58.67 15 2 C -0.03 -1.53 5.49 84.83 0.47 -1.06 15 3 Si 1.00 45.02 29.55 68.60 2.03 47.04 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 7 C -0.38 -22.60 9.07 67.92 0.62 -21.99 15 8 H 0.07 3.91 7.76 -2.91 -0.02 3.89 15 9 O -0.25 -15.03 8.91 -23.02 -0.21 -15.24 15 10 C 0.11 5.37 5.57 22.60 0.13 5.50 15 11 C -0.01 -0.62 7.32 22.52 0.16 -0.46 15 12 F -0.15 -7.88 17.03 44.97 0.77 -7.12 15 13 C 0.07 2.35 7.30 22.39 0.16 2.51 15 14 F -0.14 -4.79 17.18 44.97 0.77 -4.02 15 15 C -0.13 -3.25 10.02 22.34 0.22 -3.03 15 16 C -0.06 -1.55 9.66 22.25 0.21 -1.33 15 17 C -0.11 -3.88 5.41 -19.74 -0.11 -3.99 15 18 C 0.12 3.99 6.58 85.56 0.56 4.55 15 19 N -0.85 -27.70 9.61 -190.01 -1.83 -29.53 15 20 H 0.26 15.65 8.31 -92.71 -0.77 14.88 15 21 H 0.19 2.88 8.06 -2.91 -0.02 2.86 15 22 H 0.19 2.57 8.03 -2.91 -0.02 2.54 15 23 H 0.07 1.70 8.00 -2.39 -0.02 1.68 15 24 H 0.05 2.33 7.19 -2.39 -0.02 2.31 15 25 H 0.35 9.08 8.98 -89.70 -0.81 8.27 15 26 H 0.35 9.76 9.08 -89.69 -0.81 8.94 15 Total: -1.00 -77.34 249.11 3.88 -73.45 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.38 Total: 13.38 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 2.43 Total: -19.30 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.53 Total: -88.20 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.21 Total: -15.24 kcal Atomic # 9 Polarization: -12.67 SS G_CDS: 1.54 Total: -11.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.34 3.88 -73.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703528864.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.659 kcal (2) G-P(sol) polarization free energy of solvation -77.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds